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Cow genome map

           
Conread name:
           
Pig3-SRG8014G04
        

               
Conread position:
               
215-386
               

               
Cow position:
               
chr1:20544280-20544103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
215-553
               

               
Cow position:
               
chr1:78689921-78689570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 152
               

               
Conread position:
               
216-343
               

               
Cow position:
               
chr1:30047616-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
216-623
               

               
Cow position:
               
chr1:24235538-24235942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 206
               

               
Conread position:
               
217-391
               

               
Cow position:
               
chr1:677461-677284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
217-433
               

               
Cow position:
               
chr1:64804123-64804343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
217-445
               

               
Cow position:
               
chr1:56477569-56477348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
218-349
               

               
Cow position:
               
chr1:64962689-64962824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
218-451
               

               
Cow position:
               
chr1:102468985-102469218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
219-444
               

               
Cow position:
               
chr1:51531741-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
219-592
               

               
Cow position:
               
chr1:94212210-94211840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 125
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr1:20667763-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 130
               

               
Conread position:
               
221-349
               

               
Cow position:
               
chr1:22192738-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
221-377
               

               
Cow position:
               
chr1:60281347-60281187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
223-403
               

               
Cow position:
               
chr1:32013927-32013751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
223-416
               

               
Cow position:
               
chr1:45673685-45673493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
223-421
               

               
Cow position:
               
chr1:87072671-87072481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
223-499
               

               
Cow position:
               
chr1:33811903-33811633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 136
               

               
Conread position:
               
223-565
               

               
Cow position:
               
chr1:31348465-31348799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 127
               

               
Conread position:
               
223-566
               

               
Cow position:
               
chr1:5872996-5873338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 131
               

               
Conread position:
               
223-592
               

               
Cow position:
               
chr1:53374407-53374040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
223-611
               

               
Cow position:
               
chr1:8349341-8349727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
223-624
               

               
Cow position:
               
chr1:54258539-54258146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
223-624
               

               
Cow position:
               
chr1:81228366-81228755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
224-459
               

               
Cow position:
               
chr1:37322027-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
19, 151
               

               
Conread position:
               
224-508
               

               
Cow position:
               
chr1:73561676-73561959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
224-619
               

               
Cow position:
               
chr1:44155220-44154846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
224-622
               

               
Cow position:
               
chr1:94226580-94226972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
224-623
               

               
Cow position:
               
chr1:89742027-89742436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
225-469
               

               
Cow position:
               
chr1:33996949-33997183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
226-398
               

               
Cow position:
               
chr1:94261511-94261347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
226-420
               

               
Cow position:
               
chr1:71643690-71643886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
226-486
               

               
Cow position:
               
chr1:91142183-91142443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
226-508
               

               
Cow position:
               
chr1:79663696-79663974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
226-518
               

               
Cow position:
               
chr1:731969-732245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
226-570
               

               
Cow position:
               
chr1:34159808-34159463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 118
               

               
Conread position:
               
226-577
               

               
Cow position:
               
chr1:8589-8244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
226-618
               

               
Cow position:
               
chr1:22628667-22629052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
226-620
               

               
Cow position:
               
chr1:21787303-21786896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
226-624
               

               
Cow position:
               
chr1:96964292-96963896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
227-458
               

               
Cow position:
               
chr1:21835916-21835688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
227-565
               

               
Cow position:
               
chr1:36998163-36997830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 122
               

               
Conread position:
               
227-620
               

               
Cow position:
               
chr1:78783519-78783128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 124
               

               
Conread position:
               
227-623
               

               
Cow position:
               
chr1:51394389-51393985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
227-623
               

               
Cow position:
               
chr1:52039604-52039212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
227-623
               

               
Cow position:
               
chr1:101822530-101822921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
228-384
               

               
Cow position:
               
chr1:33206905-33207061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
228-406
               

               
Cow position:
               
chr1:100393196-100393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
228-477
               

               
Cow position:
               
chr1:40600011-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
228-494
               

               
Cow position:
               
chr1:81613357-81613089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
229-416
               

               
Cow position:
               
chr1:14981157-14981337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
229-509
               

               
Cow position:
               
chr1:100800322-100800046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
230-354
               

               
Cow position:
               
chr1:80311435-80311310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
230-454
               

               
Cow position:
               
chr1:61884881-61884659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
230-460
               

               
Cow position:
               
chr1:20806287-20806056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
230-570
               

               
Cow position:
               
chr1:3167106-3167438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 24
               

               
Conread position:
               
231-508
               

               
Cow position:
               
chr1:39510087-39510365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
231-529
               

               
Cow position:
               
chr1:61494846-61494546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
8, 107
               

               
Conread position:
               
237-358
               

               
Cow position:
               
chr1:38753876-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 5
               

               
Conread position:
               
237-458
               

               
Cow position:
               
chr1:99609325-99609106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
238-392
               

               
Cow position:
               
chr1:82443501-82443651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
238-415
               

               
Cow position:
               
chr1:7450086-7449915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
239-393
               

               
Cow position:
               
chr1:70033726-70033882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
239-441
               

               
Cow position:
               
chr1:95971995-95971792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
239-441
               

               
Cow position:
               
chr1:95973131-95972928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
239-562
               

               
Cow position:
               
chr1:52329573-52329891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
239-619
               

               
Cow position:
               
chr1:74822404-74822029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 25
               

               
Conread position:
               
239-623
               

               
Cow position:
               
chr1:39069000-39069387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 103
               

               
Conread position:
               
239-625
               

               
Cow position:
               
chr1:55137272-55137665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 74
               

               
Conread position:
               
240-372
               

               
Cow position:
               
chr1:80631654-80631524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
240-376
               

               
Cow position:
               
chr1:91874955-91875090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
133, 82
               

               
Conread position:
               
240-393
               

               
Cow position:
               
chr1:65025219-65025061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
240-393
               

               
Cow position:
               
chr1:92606961-92607115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
240-394
               

               
Cow position:
               
chr1:89437983-89438132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
240-413
               

               
Cow position:
               
chr1:68996136-68995956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
240-438
               

               
Cow position:
               
chr1:30504425-30504231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-448
               

               
Cow position:
               
chr1:24655917-24655710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
240-451
               

               
Cow position:
               
chr1:11770336-11770546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
240-457
               

               
Cow position:
               
chr1:19545145-19545354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
240-529
               

               
Cow position:
               
chr1:7350496-7350207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
240-566
               

               
Cow position:
               
chr1:55135786-55135474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 42
               

               
Conread position:
               
240-620
               

               
Cow position:
               
chr1:67008788-67009150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
240-625
               

               
Cow position:
               
chr1:7416697-7416311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 198
               

               
Conread position:
               
240-625
               

               
Cow position:
               
chr1:96184064-96184435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
241-408
               

               
Cow position:
               
chr1:75382947-75382781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
241-454
               

               
Cow position:
               
chr1:29975650-29975853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 43
               

               
Conread position:
               
241-624
               

               
Cow position:
               
chr1:63596099-63596484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
242-341
               

               
Cow position:
               
chr1:91023516-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-343
               

               
Cow position:
               
chr1:65909479-65909377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
242-354
               

               
Cow position:
               
chr1:51684753-51684643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
242-355
               

               
Cow position:
               
chr1:70026392-70026505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-358
               

               
Cow position:
               
chr1:89508508-89508392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-359
               

               
Cow position:
               
chr1:31960177-31960059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
242-359
               

               
Cow position:
               
chr1:43703359-43703243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
242-360
               

               
Cow position:
               
chr1:86110779-86110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
242-367
               

               
Cow position:
               
chr1:87211895-87211772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-370
               

               
Cow position:
               
chr1:49317544-49317669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
59, 104
               

               
Conread position:
               
242-376
               

               
Cow position:
               
chr1:75933224-75933094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
242-378
               

               
Cow position:
               
chr1:68763731-68763862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-381
               

               
Cow position:
               
chr1:24445676-24445812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
242-385
               

               
Cow position:
               
chr1:89083062-89082920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-386
               

               
Cow position:
               
chr1:42398242-42398385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
242-390
               

               
Cow position:
               
chr1:83593851-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
59, 121
               

               
Conread position:
               
242-390
               

               
Cow position:
               
chr1:102113153-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-391
               

               
Cow position:
               
chr1:46030404-46030546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 104
               

               
Conread position:
               
242-392
               

               
Cow position:
               
chr1:95178906-95178757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
242-392
               

               
Cow position:
               
chr1:96277102-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
242-407
               

               
Cow position:
               
chr1:95654762-95654925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr1:98372585-98372416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
242-416
               

               
Cow position:
               
chr1:53671789-53671968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
242-416
               

               
Cow position:
               
chr1:98030866-98030696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
242-418
               

               
Cow position:
               
chr1:98311020-98310840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
242-424
               

               
Cow position:
               
chr1:62291739-62291912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
242-425
               

               
Cow position:
               
chr1:26201171-26200993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-425
               

               
Cow position:
               
chr1:49753880-49753705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-432
               

               
Cow position:
               
chr1:79278495-79278676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr1:71079006-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
242-442
               

               
Cow position:
               
chr1:51836522-51836327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
242-443
               

               
Cow position:
               
chr1:6077851-6077649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
242-443
               

               
Cow position:
               
chr1:44506920-44506722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
242-444
               

               
Cow position:
               
chr1:63905520-63905720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
242-444
               

               
Cow position:
               
chr1:81277251-81277447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
242-446
               

               
Cow position:
               
chr1:70538559-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-446
               

               
Cow position:
               
chr1:78857370-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr1:10633000-10632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr1:81563688-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr1:47233527-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr1:71253601-71253806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr1:75967383-75967185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr1:89395553-89395340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
242-450
               

               
Cow position:
               
chr1:14379583-14379782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr1:57635413-57635213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr1:45555316-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
158, 91
               

               
Conread position:
               
242-456
               

               
Cow position:
               
chr1:16767131-16767343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-458
               

               
Cow position:
               
chr1:75744812-75744600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr1:43505476-43505262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr1:45535657-45535441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr1:55146754-55146538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 55
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr1:71295354-71295569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 159
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr1:95327199-95327414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
242-461
               

               
Cow position:
               
chr1:90864341-90864563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
242-462
               

               
Cow position:
               
chr1:60546310-60546534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr1:89509971-89510205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr1:78810989-78810761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 12
               

               
Conread position:
               
242-477
               

               
Cow position:
               
chr1:70796140-70796372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
242-483
               

               
Cow position:
               
chr1:3537793-3538034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-491
               

               
Cow position:
               
chr1:34000864-34000612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
242-496
               

               
Cow position:
               
chr1:87888352-87888108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 78
               

               
Conread position:
               
242-504
               

               
Cow position:
               
chr1:46354868-46354606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
242-505
               

               
Cow position:
               
chr1:22448635-22448891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
242-506
               

               
Cow position:
               
chr1:47008983-47008724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 91
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chr1:88652582-88652321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chr1:97513125-97513392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 154
               

               
Conread position:
               
242-524
               

               
Cow position:
               
chr1:39555328-39555055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
242-527
               

               
Cow position:
               
chr1:57900788-57901066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 36
               

               
Conread position:
               
242-529
               

               
Cow position:
               
chr1:73960657-73960369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
242-563
               

               
Cow position:
               
chr1:91066201-91066513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
242-564
               

               
Cow position:
               
chr1:90640983-90640666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 184
               

               
Conread position:
               
242-565
               

               
Cow position:
               
chr1:44244537-44244860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 259
               

               
Conread position:
               
242-565
               

               
Cow position:
               
chr1:62582642-62582970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
242-565
               

               
Cow position:
               
chr1:91816820-91817138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 40
               

               
Conread position:
               
242-567
               

               
Cow position:
               
chr1:6278426-6278091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr1:82884438-82884757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-579
               

               
Cow position:
               
chr1:71045706-71045370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 103
               

               
Conread position:
               
242-582
               

               
Cow position:
               
chr1:48105482-48105820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 96
               

               
Conread position:
               
242-590
               

               
Cow position:
               
chr1:80870067-80869716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 315
               

               
Conread position:
               
242-591
               

               
Cow position:
               
chr1:3035041-3035383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 111
               

               
Conread position:
               
242-591
               

               
Cow position:
               
chr1:3720482-3720819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 86
               

               
Conread position:
               
242-591
               

               
Cow position:
               
chr1:102647320-102647663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
242-598
               

               
Cow position:
               
chr1:85151229-85151578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
242-600
               

               
Cow position:
               
chr1:66752042-66752401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-602
               

               
Cow position:
               
chr1:86597774-86597412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-611
               

               
Cow position:
               
chr1:40962925-40963293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 149
               

               
Conread position:
               
242-614
               

               
Cow position:
               
chr1:97755468-97755103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
240, 86
               

               
Conread position:
               
242-617
               

               
Cow position:
               
chr1:57573370-57573743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
242-617
               

               
Cow position:
               
chr1:71946423-71946783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 66
               

               
Conread position:
               
242-617
               

               
Cow position:
               
chr1:72034972-72035348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 156
               

               
Conread position:
               
242-618
               

               
Cow position:
               
chr1:99136479-99136849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
242-619
               

               
Cow position:
               
chr1:17286454-17286832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-619
               

               
Cow position:
               
chr1:95499542-95499918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 37
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:51968412-51968051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:61564748-61564370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 229
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:64251102-64251490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 16
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:68817847-68818235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 103
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:78920792-78921171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 364
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:81569079-81569459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:83582984-83583367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 12
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:86543746-86544126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:88625409-88625028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:89342043-89342411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:90392539-90392921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:98551668-98551298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 144
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr1:98984964-98985346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:3137881-3137512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:22729003-22728624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:26702255-26702622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:41697010-41696636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:53458648-53458281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 97
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:56225418-56225047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 91
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:67821259-67821642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 80
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:68618981-68619344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:68951579-68951218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:69941015-69941389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:84255715-84255333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 261
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr1:99642414-99642784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:666317-665945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:1403529-1403875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:3790114-3790480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 74
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:15311821-15311440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:26930019-26930394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:54199430-54199806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:77620496-77620120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 43
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr1:100421784-100421419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 60
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:4032580-4032217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:11873410-11873781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:13452005-13451622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:18181892-18182271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:29038761-29038375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 154
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:31536061-31535685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
64, 132
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:35597597-35597977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 154
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:40578736-40578350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:44136514-44136871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:44517626-44517242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:53313363-53312983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 223
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:57524865-57525241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:60114987-60114603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:62224141-62223757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:62507027-62507411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:64817933-64818317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:67830915-67831300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:69670259-69670641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:73432914-73433297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 346
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:82908611-82908993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:82936640-82937011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 31
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:84447899-84447515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:89185227-89185624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:89492025-89492407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 51
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:91733838-91733454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr1:91903240-91902853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
243-393
               

               
Cow position:
               
chr1:24542631-24542777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
243-427
               

               
Cow position:
               
chr1:55705299-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
243-439
               

               
Cow position:
               
chr1:94404163-94403975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
243-517
               

               
Cow position:
               
chr1:33331137-33331389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
243-549
               

               
Cow position:
               
chr1:20204979-20204674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
243-558
               

               
Cow position:
               
chr1:15050301-15050001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
243-618
               

               
Cow position:
               
chr1:68253542-68253171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 88
               

               
Conread position:
               
243-619
               

               
Cow position:
               
chr1:89349913-89349561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
243-621
               

               
Cow position:
               
chr1:12595953-12596327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 102
               

               
Conread position:
               
243-622
               

               
Cow position:
               
chr1:57575808-57576186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 122
               

               
Conread position:
               
243-625
               

               
Cow position:
               
chr1:9526781-9526399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
243-625
               

               
Cow position:
               
chr1:31645413-31645795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
244-356
               

               
Cow position:
               
chr1:85647832-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-384
               

               
Cow position:
               
chr1:92369682-92369542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-403
               

               
Cow position:
               
chr1:42175674-42175517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
244-459
               

               
Cow position:
               
chr1:80900067-80899847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 185
               

               
Conread position:
               
244-493
               

               
Cow position:
               
chr1:98380622-98380872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
245-362
               

               
Cow position:
               
chr1:87095281-87095399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
245-393
               

               
Cow position:
               
chr1:51654360-51654215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
245-395
               

               
Cow position:
               
chr1:43872382-43872532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-407
               

               
Cow position:
               
chr1:90976136-90976292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
245-413
               

               
Cow position:
               
chr1:74956072-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
245-421
               

               
Cow position:
               
chr1:96472394-96472206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
245-424
               

               
Cow position:
               
chr1:41954296-41954481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 181
               

               
Conread position:
               
245-437
               

               
Cow position:
               
chr1:40531164-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
245-444
               

               
Cow position:
               
chr1:4294004-4293818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
245-450
               

               
Cow position:
               
chr1:64160289-64160089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chr1:6941412-6941212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chr1:6958825-6958625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
245-454
               

               
Cow position:
               
chr1:68826956-68827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
54, 101
               

               
Conread position:
               
245-457
               

               
Cow position:
               
chr1:42555212-42555011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
245-458
               

               
Cow position:
               
chr1:20799834-20799608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
245-459
               

               
Cow position:
               
chr1:82337832-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
183, 149
               

               
Conread position:
               
245-481
               

               
Cow position:
               
chr1:72286108-72286332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
245-489
               

               
Cow position:
               
chr1:99095311-99095072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 96
               

               
Conread position:
               
245-506
               

               
Cow position:
               
chr1:84283023-84282753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr1:26688526-26688790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
213, 117
               

               
Conread position:
               
245-543
               

               
Cow position:
               
chr1:100706082-100705791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 89
               

               
Conread position:
               
245-596
               

               
Cow position:
               
chr1:82861730-82861374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
245-614
               

               
Cow position:
               
chr1:102349805-102350185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
245-621
               

               
Cow position:
               
chr1:19466005-19465637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
199, 67
               

               
Conread position:
               
245-621
               

               
Cow position:
               
chr1:81355760-81356126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
245-623
               

               
Cow position:
               
chr1:20002290-20002681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
245-623
               

               
Cow position:
               
chr1:21573002-21572619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 298
               

               
Conread position:
               
245-623
               

               
Cow position:
               
chr1:43352709-43353074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr1:20000803-20001179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 16
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr1:36613326-36613700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr1:44769164-44769540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 86
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr1:61724073-61724446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
245-625
               

               
Cow position:
               
chr1:55357336-55357713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
245-625
               

               
Cow position:
               
chr1:92963344-92962957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 46
               

               
Conread position:
               
245-625
               

               
Cow position:
               
chr1:101007671-101008033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
246-370
               

               
Cow position:
               
chr1:11832816-11832940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-383
               

               
Cow position:
               
chr1:31607947-31608084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
246-430
               

               
Cow position:
               
chr1:43389103-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
246-452
               

               
Cow position:
               
chr1:31347968-31348162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
246-458
               

               
Cow position:
               
chr1:4291108-4290898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
246-623
               

               
Cow position:
               
chr1:41004415-41004790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 163
               

               
Conread position:
               
247-400
               

               
Cow position:
               
chr1:81471079-81470926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-433
               

               
Cow position:
               
chr1:43358065-43358249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
247-435
               

               
Cow position:
               
chr1:10655431-10655240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr1:72103796-72103587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 97
               

               
Conread position:
               
247-459
               

               
Cow position:
               
chr1:54478271-54478061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
182, 109
               

               
Conread position:
               
247-459
               

               
Cow position:
               
chr1:84116345-84116141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
247-590
               

               
Cow position:
               
chr1:68276361-68276016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 172
               

               
Conread position:
               
247-612
               

               
Cow position:
               
chr1:100400249-100400612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 93
               

               
Conread position:
               
247-620
               

               
Cow position:
               
chr1:31934459-31934085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr1:31765440-31765819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr1:52496730-52496352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr1:79591054-79590672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
247-625
               

               
Cow position:
               
chr1:44165029-44164649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 176
               

               
Conread position:
               
248-451
               

               
Cow position:
               
chr1:36932104-36931906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr1:23969090-23969361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 88
               

               
Conread position:
               
248-621
               

               
Cow position:
               
chr1:38278087-38278454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 176
               

               
Conread position:
               
248-624
               

               
Cow position:
               
chr1:76222745-76223117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
248-625
               

               
Cow position:
               
chr1:30066563-30066204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
249-425
               

               
Cow position:
               
chr1:7186740-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr1:8532269-8532641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
250-380
               

               
Cow position:
               
chr1:86578894-86578766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
250-508
               

               
Cow position:
               
chr1:18936885-18937143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 196
               

               
Conread position:
               
250-618
               

               
Cow position:
               
chr1:43893869-43893502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
250-625
               

               
Cow position:
               
chr1:68282746-68282367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
251-461
               

               
Cow position:
               
chr1:52488018-52488221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
251-625
               

               
Cow position:
               
chr1:81290450-81290094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
252-414
               

               
Cow position:
               
chr1:34771562-34771720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
252-450
               

               
Cow position:
               
chr1:81363926-81363742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
252-471
               

               
Cow position:
               
chr1:55686275-55686492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 144
               

               
Conread position:
               
253-553
               

               
Cow position:
               
chr1:44125706-44126004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
165, 74
               

               
Conread position:
               
255-624
               

               
Cow position:
               
chr1:11772135-11772500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 293
               

               
Conread position:
               
255-624
               

               
Cow position:
               
chr1:22827106-22826742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 90
               

               
Conread position:
               
257-337
               

               
Cow position:
               
chr1:87440405-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
81
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
258-358
               

               
Cow position:
               
chr1:426981-427083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
258-387
               

               
Cow position:
               
chr1:7748156-7748023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
258-387
               

               
Cow position:
               
chr1:7752322-7752189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
258-430
               

               
Cow position:
               
chr1:100512535-100512364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
258-454
               

               
Cow position:
               
chr1:3757892-3757696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
258-457
               

               
Cow position:
               
chr1:70434939-70434733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
258-474
               

               
Cow position:
               
chr1:32631403-32631193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
258-508
               

               
Cow position:
               
chr1:41056618-41056373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 49
               

               
Conread position:
               
258-623
               

               
Cow position:
               
chr1:89835185-89834820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
258-624
               

               
Cow position:
               
chr1:11913941-11914298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
258-624
               

               
Cow position:
               
chr1:33717164-33716795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 283
               

               
Conread position:
               
258-625
               

               
Cow position:
               
chr1:57639586-57639928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
264-451
               

               
Cow position:
               
chr1:5135764-5135944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
264-618
               

               
Cow position:
               
chr1:85774390-85774044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
265-451
               

               
Cow position:
               
chr1:1916306-1916489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
158, 74
               

               
Conread position:
               
265-623
               

               
Cow position:
               
chr1:40062381-40062021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
269-407
               

               
Cow position:
               
chr1:99792740-99792602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
269-625
               

               
Cow position:
               
chr1:53397916-53397557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
270-421
               

               
Cow position:
               
chr1:71953006-71952864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
270-624
               

               
Cow position:
               
chr1:73757012-73756665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
271-427
               

               
Cow position:
               
chr1:93043952-93043796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-448
               

               
Cow position:
               
chr1:42138789-42138615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
273-430
               

               
Cow position:
               
chr1:102784884-102784728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
281-623
               

               
Cow position:
               
chr1:51983497-51983174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 47
               

               
Conread position:
               
216-582
               

               
Cow position:
               
chr10:24096429-24096794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
216-623
               

               
Cow position:
               
chr10:39875197-39875584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
216-625
               

               
Cow position:
               
chr10:10468933-10468521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
217-391
               

               
Cow position:
               
chr10:33732917-33733093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
217-441
               

               
Cow position:
               
chr10:25045735-25045956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
217-458
               

               
Cow position:
               
chr10:15871922-15872153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
217-589
               

               
Cow position:
               
chr10:52046815-52046444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
217-624
               

               
Cow position:
               
chr10:48462386-48462797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
221-458
               

               
Cow position:
               
chr10:60388819-60389049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
223-430
               

               
Cow position:
               
chr10:52113725-52113928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
223-430
               

               
Cow position:
               
chr10:59151917-59152126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 115
               

               
Conread position:
               
223-570
               

               
Cow position:
               
chr10:59010192-59010544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
223-620
               

               
Cow position:
               
chr10:65132905-65132500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
223-625
               

               
Cow position:
               
chr10:20372180-20372574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 233
               

               
Conread position:
               
224-384
               

               
Cow position:
               
chr10:31000648-31000818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
224-398
               

               
Cow position:
               
chr10:47412160-47412339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
224-448
               

               
Cow position:
               
chr10:24744488-24744277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
224-458
               

               
Cow position:
               
chr10:13586651-13586423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
224-597
               

               
Cow position:
               
chr10:42675860-42676237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
226-366
               

               
Cow position:
               
chr10:51942733-51942588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
226-404
               

               
Cow position:
               
chr10:25882361-25882189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
226-424
               

               
Cow position:
               
chr10:50183106-50183304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
226-425
               

               
Cow position:
               
chr10:29588896-29589100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
226-430
               

               
Cow position:
               
chr10:57059340-57059544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
226-436
               

               
Cow position:
               
chr10:31812493-31812686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
226-451
               

               
Cow position:
               
chr10:48257338-48257568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 159
               

               
Conread position:
               
226-566
               

               
Cow position:
               
chr10:14975853-14976200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
226-612
               

               
Cow position:
               
chr10:6642828-6642421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
226-617
               

               
Cow position:
               
chr10:7737744-7737341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 297
               

               
Conread position:
               
226-623
               

               
Cow position:
               
chr10:60960879-60960478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
226-624
               

               
Cow position:
               
chr10:18042124-18041722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
226-624
               

               
Cow position:
               
chr10:46801063-46801462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
226-625
               

               
Cow position:
               
chr10:40737938-40737548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
227-507
               

               
Cow position:
               
chr10:24732251-24731975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 204
               

               
Conread position:
               
227-579
               

               
Cow position:
               
chr10:59675666-59676037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
227-621
               

               
Cow position:
               
chr10:16598625-16598236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
227-621
               

               
Cow position:
               
chr10:63940713-63940327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
227-624
               

               
Cow position:
               
chr10:50359857-50359456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
228-348
               

               
Cow position:
               
chr10:55849294-55849172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
228-380
               

               
Cow position:
               
chr10:24375490-24375336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
228-428
               

               
Cow position:
               
chr10:12486202-12486006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
228-448
               

               
Cow position:
               
chr10:14947200-14946986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
228-544
               

               
Cow position:
               
chr10:22786837-22786524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
228-621
               

               
Cow position:
               
chr10:28395364-28395738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
228-623
               

               
Cow position:
               
chr10:77324-76941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 28
               

               
Conread position:
               
237-402
               

               
Cow position:
               
chr10:28840878-28840718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
237-452
               

               
Cow position:
               
chr10:58935264-58935474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
237-454
               

               
Cow position:
               
chr10:54936184-54936399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
238-389
               

               
Cow position:
               
chr10:1996736-1996887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
238-417
               

               
Cow position:
               
chr10:9586593-9586768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 5
               

               
Conread position:
               
238-508
               

               
Cow position:
               
chr10:16830488-16830767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
238-528
               

               
Cow position:
               
chr10:8595318-8595027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
239-384
               

               
Cow position:
               
chr10:17836877-17836732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
239-546
               

               
Cow position:
               
chr10:33067642-33067964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
239-621
               

               
Cow position:
               
chr10:10148579-10148176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 156
               

               
Conread position:
               
239-623
               

               
Cow position:
               
chr10:37529341-37529736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
239-625
               

               
Cow position:
               
chr10:31374170-31374564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
240-389
               

               
Cow position:
               
chr10:42115179-42115028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 137
               

               
Conread position:
               
240-393
               

               
Cow position:
               
chr10:46493074-46493229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
240-458
               

               
Cow position:
               
chr10:39646179-39646397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
240-458
               

               
Cow position:
               
chr10:48388348-48388570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
240-508
               

               
Cow position:
               
chr10:10985565-10985832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 175
               

               
Conread position:
               
240-570
               

               
Cow position:
               
chr10:14817236-14817556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
240-570
               

               
Cow position:
               
chr10:36002122-36001803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
240-618
               

               
Cow position:
               
chr10:30352771-30352385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 0
               

               
Conread position:
               
240-618
               

               
Cow position:
               
chr10:39110080-39110452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 91
               

               
Conread position:
               
240-621
               

               
Cow position:
               
chr10:8923201-8922827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 218
               

               
Conread position:
               
240-625
               

               
Cow position:
               
chr10:1488763-1488401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 85
               

               
Conread position:
               
240-625
               

               
Cow position:
               
chr10:32583834-32583455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 58
               

               
Conread position:
               
241-393
               

               
Cow position:
               
chr10:33098281-33098128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
241-430
               

               
Cow position:
               
chr10:48683331-48683520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
241-623
               

               
Cow position:
               
chr10:37528682-37529070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
241-624
               

               
Cow position:
               
chr10:20447017-20446648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
241-624
               

               
Cow position:
               
chr10:22527981-22528357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
241-624
               

               
Cow position:
               
chr10:22567523-22567893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
241-625
               

               
Cow position:
               
chr10:32775030-32774658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 9
               

               
Conread position:
               
242-337
               

               
Cow position:
               
chr10:35856428-35856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-340
               

               
Cow position:
               
chr10:37295743-37295839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
242-349
               

               
Cow position:
               
chr10:52695807-52695914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-362
               

               
Cow position:
               
chr10:24781109-24780989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-374
               

               
Cow position:
               
chr10:10470009-10469876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-376
               

               
Cow position:
               
chr10:35778980-35779114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-403
               

               
Cow position:
               
chr10:28152458-28152619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-403
               

               
Cow position:
               
chr10:40164014-40164165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr10:2853722-2853885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr10:37415709-37415546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr10:60722227-60722383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
242-416
               

               
Cow position:
               
chr10:50559005-50559176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 117
               

               
Conread position:
               
242-420
               

               
Cow position:
               
chr10:43508913-43508742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
242-421
               

               
Cow position:
               
chr10:29252087-29251908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-427
               

               
Cow position:
               
chr10:67020548-67020368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
242-429
               

               
Cow position:
               
chr10:24561065-24561248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-429
               

               
Cow position:
               
chr10:36489940-36489758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
242-431
               

               
Cow position:
               
chr10:28176470-28176657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-433
               

               
Cow position:
               
chr10:5264741-5264552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 82
               

               
Conread position:
               
242-435
               

               
Cow position:
               
chr10:59571823-59571629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr10:22158498-22158302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 76
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr10:24132898-24133091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr10:29233283-29233094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr10:63276314-63276117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
59, 121
               

               
Conread position:
               
242-443
               

               
Cow position:
               
chr10:35802447-35802645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
153, 103
               

               
Conread position:
               
242-447
               

               
Cow position:
               
chr10:38370537-38370741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr10:20553104-20552906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr10:48255302-48255504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
242-451
               

               
Cow position:
               
chr10:15498736-15498945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr10:38014287-38014088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr10:57457257-57457047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr10:9798276-9798480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr10:27749600-27749388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr10:33867468-33867663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr10:49169131-49169343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 182
               

               
Conread position:
               
242-456
               

               
Cow position:
               
chr10:13391128-13391342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-456
               

               
Cow position:
               
chr10:35026400-35026191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 101
               

               
Conread position:
               
242-457
               

               
Cow position:
               
chr10:23506569-23506777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
198, 44
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:15115535-15115324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:17983107-17982897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:35857133-35857346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 103
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:37668236-37668447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:41941655-41941872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr10:58259596-58259807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
242-460
               

               
Cow position:
               
chr10:39228067-39227864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
242-460
               

               
Cow position:
               
chr10:40906237-40906020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr10:19094570-19094344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr10:35767160-35767382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr10:51696662-51696451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr10:43182900-43183131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr10:54504526-54504296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
242-475
               

               
Cow position:
               
chr10:67443184-67443413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
242-477
               

               
Cow position:
               
chr10:55075020-55075255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
242-479
               

               
Cow position:
               
chr10:15462411-15462185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 105
               

               
Conread position:
               
242-482
               

               
Cow position:
               
chr10:62353385-62353151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
242-483
               

               
Cow position:
               
chr10:56828397-56828636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
242-484
               

               
Cow position:
               
chr10:20897226-20896984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 71
               

               
Conread position:
               
242-491
               

               
Cow position:
               
chr10:18469838-18470088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-506
               

               
Cow position:
               
chr10:46395124-46394859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chr10:44783267-44783000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-529
               

               
Cow position:
               
chr10:21422238-21422516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 51
               

               
Conread position:
               
242-536
               

               
Cow position:
               
chr10:26291258-26291553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 233
               

               
Conread position:
               
242-548
               

               
Cow position:
               
chr10:31791336-31791636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
242-565
               

               
Cow position:
               
chr10:8077225-8077545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 230
               

               
Conread position:
               
242-566
               

               
Cow position:
               
chr10:24871810-24871471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 161
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr10:15504055-15504384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr10:31400973-31401301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-577
               

               
Cow position:
               
chr10:5607565-5607238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
242-579
               

               
Cow position:
               
chr10:31779349-31779655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
242-585
               

               
Cow position:
               
chr10:35904902-35905246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 333
               

               
Conread position:
               
242-601
               

               
Cow position:
               
chr10:51944280-51943929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 86
               

               
Conread position:
               
242-602
               

               
Cow position:
               
chr10:53973769-53973418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
242-602
               

               
Cow position:
               
chr10:54469473-54469817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               
242-603UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:51862156-51862493 (view  custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 12
               
242-606UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:20095679-20095326 (view  custom track)

               
               
               
Alignm length:
365

               
               
               
Alignm identity:
280

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
173, 0
242-611UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:21082306-21081941 (view  custom track)

               
               
               
Alignm length:
387

               
               
               
Alignm identity:
271

               
               
               
Alignm E-value:
1e-39

               
               
               
Alignm gaps (pig, cow):
218, 103

               
               
               Conread position:242-617
               
               
               Cow position:chr10:2115345-2115720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:242-619
               
               
               Cow position:chr10:30523143-30523509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:242-619
               
               
               Cow position:chr10:52278652-52278272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 336

               
               
               Conread position:242-620
               
               
               Cow position:chr10:32174653-32174288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr10:37124976-37125355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-621
               
               
               Cow position:chr10:2613288-2612932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr10:9576116-9576501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 88

               
               
               Conread position:242-621
               
               
               Cow position:chr10:10720751-10721138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr10:15817871-15818245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr10:29816510-29816135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 20

               
               
               Conread position:242-621
               
               
               Cow position:chr10:35823103-35823481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr10:50609461-50609100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr10:34655191-34655565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr10:888847-888461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:242-623
               
               
               Cow position:chr10:1978747-1979128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 50

               
               
               Conread position:242-623
               
               
               Cow position:chr10:6986367-6985995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 90

               
               
               Conread position:242-623
               
               
               Cow position:chr10:7366864-7367252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 206

               
               
               Conread position:242-623
               
               
               Cow position:chr10:9445092-9445457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr10:10048606-10048234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:242-623
               
               
               Cow position:chr10:12315078-12314703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr10:19372416-19372775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr10:24307993-24308350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 91

               
               
               Conread position:242-623
               
               
               Cow position:chr10:24971691-24972051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr10:30360440-30360074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr10:32503370-32503017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-623
               
               
               Cow position:chr10:33215722-33215341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 153

               
               
               Conread position:242-623
               
               
               Cow position:chr10:47773651-47773280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 116

               
               
               Conread position:242-623
               
               
               Cow position:chr10:50200636-50200248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 153

               
               
               Conread position:242-623
               
               
               Cow position:chr10:53674745-53674369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:242-623
               
               
               Cow position:chr10:61839517-61839138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 60

               
               
               Conread position:242-624
               
               
               Cow position:chr10:9083219-9082856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:242-624
               
               
               Cow position:chr10:22616716-22617098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 332

               
               
               Conread position:242-624
               
               
               Cow position:chr10:27362410-27362034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 60

               
               
               Conread position:242-624
               
               
               Cow position:chr10:35731601-35731985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 180

               
               
               Conread position:242-624
               
               
               Cow position:chr10:37818635-37819016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr10:62286475-62286095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr10:1381728-1381344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:6551465-6551089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-625
               
               
               Cow position:chr10:10802313-10802697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:242-625
               
               
               Cow position:chr10:19104248-19104639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 339

               
               
               Conread position:242-625
               
               
               Cow position:chr10:21462160-21461781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:242-625
               
               
               Cow position:chr10:21657345-21656967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:22381949-22381565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:22538257-22537873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr10:26538669-26539052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 304

               
               
               Conread position:242-625
               
               
               Cow position:chr10:32010036-32009652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:38274362-38273980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-625
               
               
               Cow position:chr10:43489861-43489490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:242-625
               
               
               Cow position:chr10:52825386-52825770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:53828821-53828441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:242-625
               
               
               Cow position:chr10:55097299-55096915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr10:56101587-56101970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:242-625
               
               
               Cow position:chr10:67649905-67649516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-443
               
               
               Cow position:chr10:16414665-16414861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:243-450
               
               
               Cow position:chr10:2185248-2185049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:243-460
               
               
               Cow position:chr10:11080882-11080666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr10:6489790-6489423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr10:34661392-34661775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:243-624
               
               
               Cow position:chr10:15868170-15867787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:243-625
               
               
               Cow position:chr10:324531-324915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 323

               
               
               Conread position:244-366
               
               
               Cow position:chr10:10120117-10119996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:244-393
               
               
               Cow position:chr10:50488230-50488380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-449
               
               
               Cow position:chr10:45370974-45370776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-623
               
               
               Cow position:chr10:38725578-38725212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:244-624
               
               
               Cow position:chr10:10134904-10134520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 182

               
               
               Conread position:245-401
               
               
               Cow position:chr10:45379085-45379242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:245-451
               
               
               Cow position:chr10:5889848-5890054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:245-459
               
               
               Cow position:chr10:37444301-37444509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:245-471
               
               
               Cow position:chr10:56080251-56080476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:245-566
               
               
               Cow position:chr10:56475385-56475070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:245-596
               
               
               Cow position:chr10:54477025-54476677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 95

               
               
               Conread position:245-610
               
               
               Cow position:chr10:24548175-24547810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 57

               
               
               Conread position:245-612
               
               
               Cow position:chr10:69564525-69564176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):61, 137

               
               
               Conread position:245-617
               
               
               Cow position:chr10:35862306-35862680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 206

               
               
               Conread position:245-617
               
               
               Cow position:chr10:54948216-54948577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:245-618
               
               
               Cow position:chr10:65423980-65424356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:245-619
               
               
               Cow position:chr10:24756335-24755982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 105

               
               
               Conread position:245-621
               
               
               Cow position:chr10:8404133-8403738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr10:30224603-30224229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-622
               
               
               Cow position:chr10:53336488-53336857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 88

               
               
               Conread position:245-623
               
               
               Cow position:chr10:3998822-3998458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr10:11009331-11008967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 23

               
               
               Conread position:245-623
               
               
               Cow position:chr10:59164176-59164540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 100

               
               
               Conread position:245-624
               
               
               Cow position:chr10:13311650-13311272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 50

               
               
               Conread position:245-624
               
               
               Cow position:chr10:15294283-15293913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:245-624
               
               
               Cow position:chr10:48377722-48378088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 186

               
               
               Conread position:245-624
               
               
               Cow position:chr10:56835202-56834822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:245-625
               
               
               Cow position:chr10:39387379-39386997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:246-452
               
               
               Cow position:chr10:52296416-52296213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:246-459
               
               
               Cow position:chr10:48259313-48259522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:246-521
               
               
               Cow position:chr10:42637144-42636878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:247-379
               
               
               Cow position:chr10:37173532-37173665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-405
               
               
               Cow position:chr10:62219743-62219586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:247-426
               
               
               Cow position:chr10:23576460-23576284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:247-427
               
               
               Cow position:chr10:24312969-24313149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:247-438
               
               
               Cow position:chr10:23376546-23376734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-458
               
               
               Cow position:chr10:20505456-20505251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:247-471
               
               
               Cow position:chr10:5847586-5847807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-471
               
               
               Cow position:chr10:34607476-34607254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-471
               
               
               Cow position:chr10:65803173-65803390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:247-481
               
               
               Cow position:chr10:64876435-64876207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:247-484
               
               
               Cow position:chr10:54848693-54848461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 109

               
               
               Conread position:247-520
               
               
               Cow position:chr10:69698901-69698631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:247-607
               
               
               Cow position:chr10:43487628-43487274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:247-619
               
               
               Cow position:chr10:3985344-3984974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):207, 87

               
               
               Conread position:247-619
               
               
               Cow position:chr10:16645272-16645645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 316

               
               
               Conread position:247-620
               
               
               Cow position:chr10:43450996-43451369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 201

               
               
               Conread position:247-621
               
               
               Cow position:chr10:26209341-26209700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:247-621
               
               
               Cow position:chr10:31027729-31028108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 113

               
               
               Conread position:247-624
               
               
               Cow position:chr10:41397399-41397011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:247-625
               
               
               Cow position:chr10:42745834-42745446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:248-619
               
               
               Cow position:chr10:60936862-60936499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:249-624
               
               
               Cow position:chr10:9675543-9675912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:250-442
               
               
               Cow position:chr10:47543002-47542816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:250-452
               
               
               Cow position:chr10:67627081-67627270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:250-465
               
               
               Cow position:chr10:53248096-53248309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:250-535
               
               
               Cow position:chr10:11213029-11212731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 282

               
               
               Conread position:250-620
               
               
               Cow position:chr10:54730933-54730571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:251-621
               
               
               Cow position:chr10:12392695-12393048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:252-391
               
               
               Cow position:chr10:66194392-66194528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:252-499
               
               
               Cow position:chr10:10752064-10752312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:252-570
               
               
               Cow position:chr10:50533958-50534269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:252-579
               
               
               Cow position:chr10:67716898-67716575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:252-624
               
               
               Cow position:chr10:22321436-22321071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:254-624
               
               
               Cow position:chr10:28836133-28835782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:255-393
               
               
               Cow position:chr10:30106198-30106328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:255-618
               
               
               Cow position:chr10:31534652-31534302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:255-625
               
               
               Cow position:chr10:55580355-55580710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:256-452
               
               
               Cow position:chr10:6173266-6173072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):173, 64

               
               
               Conread position:258-378
               
               
               Cow position:chr10:62293906-62293783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:258-394
               
               
               Cow position:chr10:6665636-6665773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:258-416
               
               
               Cow position:chr10:35868095-35868250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:258-429
               
               
               Cow position:chr10:59141336-59141166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:258-436
               
               
               Cow position:chr10:20997370-20997545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:258-439
               
               
               Cow position:chr10:35246034-35246215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-475
               
               
               Cow position:chr10:1423746-1423524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:258-536
               
               
               Cow position:chr10:805102-804825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 54

               
               
               Conread position:258-565
               
               
               Cow position:chr10:34906618-34906313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:258-612
               
               
               Cow position:chr10:31362302-31362650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:258-623
               
               
               Cow position:chr10:47159011-47158650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 44

               
               
               Conread position:259-532
               
               
               Cow position:chr10:55733695-55733964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:260-410
               
               
               Cow position:chr10:23500306-23500459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-412
               
               
               Cow position:chr10:64041988-64041838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:260-487
               
               
               Cow position:chr10:25509605-25509379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:260-543
               
               
               Cow position:chr10:57142308-57142595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:260-623
               
               
               Cow position:chr10:17073455-17073813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 98

               
               
               Conread position:263-546
               
               
               Cow position:chr10:49846676-49846397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:263-623
               
               
               Cow position:chr10:5113491-5113132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 168

               
               
               Conread position:264-435
               
               
               Cow position:chr10:35715809-35715978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:264-456
               
               
               Cow position:chr10:26607985-26608177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:264-459
               
               
               Cow position:chr10:23936384-23936192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:264-497
               
               
               Cow position:chr10:30441136-30441372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 153

               
               
               Conread position:264-543
               
               
               Cow position:chr10:6852171-6851896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:264-624
               
               
               Cow position:chr10:2849256-2848898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:270-570
               
               
               Cow position:chr10:23886560-23886848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:275-389
               
               
               Cow position:chr10:3362511-3362397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-459
               
               
               Cow position:chr11:57111343-57111594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:215-441
               
               
               Cow position:chr11:34032243-34032464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:215-507
               
               
               Cow position:chr11:9837140-9837437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:215-624
               
               
               Cow position:chr11:21894197-21894599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:216-427
               
               
               Cow position:chr11:63516785-63516569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:216-523
               
               
               Cow position:chr11:81614682-81614979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:216-624
               
               
               Cow position:chr11:10076726-10076323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:216-624
               
               
               Cow position:chr11:68570707-68571123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 142

               
               
               Conread position:217-437
               
               
               Cow position:chr11:65159496-65159710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:217-488
               
               
               Cow position:chr11:78381101-78381359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:218-451
               
               
               Cow position:chr11:2281336-2281565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:222-623
               
               
               Cow position:chr11:27462439-27462858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:223-437
               
               
               Cow position:chr11:84924143-84924360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 204

               
               
               Conread position:223-625
               
               
               Cow position:chr11:33364295-33363889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:224-384
               
               
               Cow position:chr11:65607740-65607905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:224-405
               
               
               Cow position:chr11:5526620-5526805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 175

               
               
               Conread position:224-467
               
               
               Cow position:chr11:18572752-18572509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:224-625
               
               
               Cow position:chr11:53778566-53778164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:225-401
               
               
               Cow position:chr11:38874453-38874630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:225-441
               
               
               Cow position:chr11:63482476-63482694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:226-343
               
               
               Cow position:chr11:71009081-71008962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:226-447
               
               
               Cow position:chr11:17227703-17227914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:226-499
               
               
               Cow position:chr11:43914162-43913896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:226-520
               
               
               Cow position:chr11:47165195-47165481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:226-524
               
               
               Cow position:chr11:30120717-30121013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:226-564
               
               
               Cow position:chr11:3833408-3833739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:226-623
               
               
               Cow position:chr11:43430508-43430910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:227-343
               
               
               Cow position:chr11:30830668-30830789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:227-411
               
               
               Cow position:chr11:62620322-62620145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):182, 42

               
               
               Conread position:227-459
               
               
               Cow position:chr11:70459509-70459288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:227-498
               
               
               Cow position:chr11:30934371-30934094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:227-621
               
               
               Cow position:chr11:76114599-76114205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:227-622
               
               
               Cow position:chr11:77758811-77759206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:227-623
               
               
               Cow position:chr11:50152868-50153264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 201

               
               
               Conread position:228-427
               
               
               Cow position:chr11:34121141-34120944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:228-430
               
               
               Cow position:chr11:36647304-36647103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-448
               
               
               Cow position:chr11:75355555-75355334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:228-469
               
               
               Cow position:chr11:62016337-62016567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:229-547
               
               
               Cow position:chr11:2092279-2091973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:229-557
               
               
               Cow position:chr11:68206898-68207232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:230-595
               
               
               Cow position:chr11:17321604-17321240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 208

               
               
               Conread position:230-623
               
               
               Cow position:chr11:48649923-48649497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 283

               
               
               Conread position:237-452
               
               
               Cow position:chr11:38194086-38193872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:239-407
               
               
               Cow position:chr11:63434125-63434290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:239-430
               
               
               Cow position:chr11:83397836-83397647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:239-564
               
               
               Cow position:chr11:23251661-23251995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:239-625
               
               
               Cow position:chr11:34278966-34278579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-366
               
               
               Cow position:chr11:2874321-2874192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:240-462
               
               
               Cow position:chr11:58156020-58155797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:240-559
               
               
               Cow position:chr11:37974855-37974541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:240-613
               
               
               Cow position:chr11:44234282-44233926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 48

               
               
               Conread position:240-621
               
               
               Cow position:chr11:19890793-19890436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 44

               
               
               Conread position:241-459
               
               
               Cow position:chr11:41549406-41549616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:241-623
               
               
               Cow position:chr11:29947003-29947382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 12

               
               
               Conread position:242-353
               
               
               Cow position:chr11:30954927-30954815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr11:61958817-61958957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr11:72375758-72375896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-383
               
               
               Cow position:chr11:36238711-36238571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:242-383
               
               
               Cow position:chr11:36286624-36286488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:242-389
               
               
               Cow position:chr11:30867068-30866922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr11:53644468-53644617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-392
               
               
               Cow position:chr11:15772787-15772942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr11:6364253-6364405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr11:39440379-39440530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:242-393
               
               
               Cow position:chr11:83768144-83767992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr11:17661020-17660872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-401
               
               
               Cow position:chr11:18591504-18591662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr11:33348256-33348417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-416
               
               
               Cow position:chr11:15016969-15016802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr11:47899207-47899033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr11:62808721-62808896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-421
               
               
               Cow position:chr11:64904925-64904747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:242-422
               
               
               Cow position:chr11:18341113-18341286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-424
               
               
               Cow position:chr11:2917658-2917831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr11:35153897-35154080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr11:36658893-36659067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):172, 53

               
               
               Conread position:242-425
               
               
               Cow position:chr11:63520700-63520520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr11:33310900-33310714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:242-430
               
               
               Cow position:chr11:45872389-45872576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-430
               
               
               Cow position:chr11:56728876-56728689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:242-431
               
               
               Cow position:chr11:20238599-20238414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):152, 89

               
               
               Conread position:242-435
               
               
               Cow position:chr11:68828304-68828111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-437
               
               
               Cow position:chr11:27746853-27746653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr11:47545058-47544863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr11:59370940-59370749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-439
               
               
               Cow position:chr11:62045324-62045132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:242-442
               
               
               Cow position:chr11:45898125-45898325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):181, 158

               
               
               Conread position:242-443
               
               
               Cow position:chr11:24937591-24937392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr11:50778301-50778098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr11:62663293-62663504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-445
               
               
               Cow position:chr11:12555483-12555690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:242-446
               
               
               Cow position:chr11:11232527-11232728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 119

               
               
               Conread position:242-448
               
               
               Cow position:chr11:62155555-62155355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:242-449
               
               
               Cow position:chr11:33341219-33341422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr11:32378115-32377909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:242-451
               
               
               Cow position:chr11:52466415-52466624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-452
               
               
               Cow position:chr11:1668604-1668395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:242-452
               
               
               Cow position:chr11:14308564-14308359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr11:19508223-19508017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 116

               
               
               Conread position:242-452
               
               
               Cow position:chr11:35149091-35148889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:242-452
               
               
               Cow position:chr11:67600710-67600488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-454
               
               
               Cow position:chr11:45631834-45632046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr11:81300682-81300897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr11:11125590-11125376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):181, 115

               
               
               Conread position:242-459
               
               
               Cow position:chr11:49934809-49935030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:242-459
               
               
               Cow position:chr11:80530296-80530084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:242-459
               
               
               Cow position:chr11:83066422-83066209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr11:73354126-73354343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-462
               
               
               Cow position:chr11:8988299-8988519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:242-462
               
               
               Cow position:chr11:57946010-57946231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr11:65857787-65857559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:242-473
               
               
               Cow position:chr11:53719871-53719644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):218, 81

               
               
               Conread position:242-478
               
               
               Cow position:chr11:25319981-25319745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-486
               
               
               Cow position:chr11:23232588-23232826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-492
               
               
               Cow position:chr11:66424953-66425193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:242-508
               
               
               Cow position:chr11:59155951-59156210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):208, 103

               
               
               Conread position:242-516
               
               
               Cow position:chr11:955293-955021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 125

               
               
               Conread position:242-528
               
               
               Cow position:chr11:54334261-54333977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:242-528
               
               
               Cow position:chr11:65591809-65591522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-534
               
               
               Cow position:chr11:28644012-28643727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:242-535
               
               
               Cow position:chr11:38236171-38235875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 90

               
               
               Conread position:242-543
               
               
               Cow position:chr11:33255790-33256090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:242-552
               
               
               Cow position:chr11:62490360-62490055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-557
               
               
               Cow position:chr11:47586421-47586731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:242-559
               
               
               Cow position:chr11:31352641-31352957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 181

               
               
               Conread position:242-568
               
               
               Cow position:chr11:81174818-81174495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-594
               
               
               Cow position:chr11:36929371-36929721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-600
               
               
               Cow position:chr11:53860225-53859858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-616
               
               
               Cow position:chr11:259245-259623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):92, 144

               
               
               Conread position:242-617
               
               
               Cow position:chr11:65430987-65430631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr11:44636830-44637207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 127

               
               
               Conread position:242-620
               
               
               Cow position:chr11:44031929-44031551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 18

               
               
               Conread position:242-620
               
               
               Cow position:chr11:63469802-63469440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr11:6154336-6153967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 10

               
               
               Conread position:242-621
               
               
               Cow position:chr11:10992209-10991817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:242-621
               
               
               Cow position:chr11:16251319-16251704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 92

               
               
               Conread position:242-621
               
               
               Cow position:chr11:23128615-23129000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 82

               
               
               Conread position:242-621
               
               
               Cow position:chr11:25386992-25386623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:242-621
               
               
               Cow position:chr11:26433428-26433046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 309

               
               
               Conread position:242-621
               
               
               Cow position:chr11:28225899-28226277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:242-621
               
               
               Cow position:chr11:39033017-39032637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr11:42793045-42793407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr11:56796814-56797180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:242-621
               
               
               Cow position:chr11:74316640-74316237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 92

               
               
               Conread position:242-621
               
               
               Cow position:chr11:87147336-87147716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr11:18698805-18698400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr11:5989442-5989819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:242-623
               
               
               Cow position:chr11:31885446-31885062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:242-623
               
               
               Cow position:chr11:35580185-35579805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 220

               
               
               Conread position:242-623
               
               
               Cow position:chr11:39115421-39115052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 87

               
               
               Conread position:242-623
               
               
               Cow position:chr11:61454600-61454987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 8

               
               
               Conread position:242-623
               
               
               Cow position:chr11:63847776-63847412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr11:64638601-64638964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:242-623
               
               
               Cow position:chr11:84385708-84386082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:242-624
               
               
               Cow position:chr11:2309799-2309415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 60

               
               
               Conread position:242-624
               
               
               Cow position:chr11:23138131-23138527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:242-624
               
               
               Cow position:chr11:29916459-29916096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-624
               
               
               Cow position:chr11:30192102-30191712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 338

               
               
               Conread position:242-624
               
               
               Cow position:chr11:41239343-41239723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 180

               
               
               Conread position:242-624
               
               
               Cow position:chr11:58588274-58587885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:242-625
               
               
               Cow position:chr11:2057648-2057277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:242-625
               
               
               Cow position:chr11:8525183-8525554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr11:10948541-10948924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr11:21621313-21620927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr11:26551345-26550966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:242-625
               
               
               Cow position:chr11:26591898-26592281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr11:31930616-31930224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):159, 81

               
               
               Conread position:242-625
               
               
               Cow position:chr11:38598843-38599227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-625
               
               
               Cow position:chr11:38843495-38843111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr11:45678033-45677656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-625
               
               
               Cow position:chr11:63260330-63260715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr11:65407950-65407574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 257

               
               
               Conread position:242-625
               
               
               Cow position:chr11:66389134-66389518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr11:66944723-66945096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:242-625
               
               
               Cow position:chr11:67747212-67746829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 154

               
               
               Conread position:243-376
               
               
               Cow position:chr11:38071285-38071150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:243-431
               
               
               Cow position:chr11:81162508-81162689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:243-458
               
               
               Cow position:chr11:41983526-41983732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr11:2788309-2788093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:243-459
               
               
               Cow position:chr11:25165369-25165159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:243-474
               
               
               Cow position:chr11:9069320-9069555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:243-496
               
               
               Cow position:chr11:41151753-41152010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):63, 210

               
               
               Conread position:243-527
               
               
               Cow position:chr11:35684568-35684853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:243-530
               
               
               Cow position:chr11:82232342-82232066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:243-617
               
               
               Cow position:chr11:52297294-52297667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 234

               
               
               Conread position:243-619
               
               
               Cow position:chr11:59702411-59702039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 20

               
               
               Conread position:243-623
               
               
               Cow position:chr11:27248419-27248045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:244-372
               
               
               Cow position:chr11:47850953-47850827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:244-397
               
               
               Cow position:chr11:11558093-11557946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:244-451
               
               
               Cow position:chr11:45646669-45646869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-452
               
               
               Cow position:chr11:83043438-83043640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr11:84967986-84967605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 257

               
               
               Conread position:245-341
               
               
               Cow position:chr11:16907119-16907214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:245-380
               
               
               Cow position:chr11:36672117-36672258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-386
               
               
               Cow position:chr11:36301151-36301295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:245-394
               
               
               Cow position:chr11:34144990-34145138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-433
               
               
               Cow position:chr11:27722286-27722102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:245-438
               
               
               Cow position:chr11:36799377-36799561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:245-447
               
               
               Cow position:chr11:71455718-71455513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-448
               
               
               Cow position:chr11:377719-377926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-451
               
               
               Cow position:chr11:1362551-1362759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-451
               
               
               Cow position:chr11:30475927-30475721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:245-452
               
               
               Cow position:chr11:21844208-21844412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:245-453
               
               
               Cow position:chr11:10127699-10127894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr11:42003019-42003239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:245-479
               
               
               Cow position:chr11:70273230-70272997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:245-481
               
               
               Cow position:chr11:32609927-32609686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 224

               
               
               Conread position:245-484
               
               
               Cow position:chr11:1071168-1071405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 57

               
               
               Conread position:245-505
               
               
               Cow position:chr11:86926002-86926254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:245-528
               
               
               Cow position:chr11:68905150-68905405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-533
               
               
               Cow position:chr11:26483639-26483361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:245-570
               
               
               Cow position:chr11:77241295-77240964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:245-572
               
               
               Cow position:chr11:83196423-83196102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:245-587
               
               
               Cow position:chr11:17860229-17860568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:245-607
               
               
               Cow position:chr11:49105982-49105625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:245-617
               
               
               Cow position:chr11:21819520-21819902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:245-620
               
               
               Cow position:chr11:74929708-74929332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:245-620
               
               
               Cow position:chr11:75480103-75480482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:245-620
               
               
               Cow position:chr11:77705680-77705317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:245-623
               
               
               Cow position:chr11:35363423-35363045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:245-624
               
               
               Cow position:chr11:38639044-38638669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 74

               
               
               Conread position:245-625
               
               
               Cow position:chr11:62979413-62979025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-435
               
               
               Cow position:chr11:30764409-30764217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-449
               
               
               Cow position:chr11:81138147-81137945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):149, 85

               
               
               Conread position:246-452
               
               
               Cow position:chr11:55333835-55333628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):203, 0

               
               
               Conread position:246-462
               
               
               Cow position:chr11:30721021-30720808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:246-588
               
               
               Cow position:chr11:59872855-59872511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:246-624
               
               
               Cow position:chr11:44819026-44818657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 204

               
               
               Conread position:247-379
               
               
               Cow position:chr11:9463757-9463622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-380
               
               
               Cow position:chr11:71492932-71493068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:247-390
               
               
               Cow position:chr11:65762677-65762814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-393
               
               
               Cow position:chr11:21830430-21830573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr11:41438297-41438469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:247-424
               
               
               Cow position:chr11:18706895-18707065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:247-425
               
               
               Cow position:chr11:81281870-81281692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-426
               
               
               Cow position:chr11:31525792-31525611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):55, 142

               
               
               Conread position:247-459
               
               
               Cow position:chr11:60470257-60470467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:247-463
               
               
               Cow position:chr11:13191148-13190929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 170

               
               
               Conread position:247-474
               
               
               Cow position:chr11:1485432-1485662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:247-480
               
               
               Cow position:chr11:7315201-7315432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):6, 102

               
               
               Conread position:247-498
               
               
               Cow position:chr11:80761456-80761702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:247-504
               
               
               Cow position:chr11:56518386-56518641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 218

               
               
               Conread position:247-509
               
               
               Cow position:chr11:71868683-71868938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:247-584
               
               
               Cow position:chr11:70838368-70838708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:247-594
               
               
               Cow position:chr11:4412092-4412441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:247-623
               
               
               Cow position:chr11:4732265-4731889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:247-623
               
               
               Cow position:chr11:10302267-10302655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:247-623
               
               
               Cow position:chr11:41577091-41577455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-624
               
               
               Cow position:chr11:8495965-8495586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:247-624
               
               
               Cow position:chr11:33414160-33413791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:247-624
               
               
               Cow position:chr11:67931568-67931927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:248-415
               
               
               Cow position:chr11:57724901-57725071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:248-567
               
               
               Cow position:chr11:15504028-15503708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 203

               
               
               Conread position:248-591
               
               
               Cow position:chr11:3769370-3769702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 54

               
               
               Conread position:248-624
               
               
               Cow position:chr11:32750036-32749656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 371

               
               
               Conread position:250-621
               
               
               Cow position:chr11:62880704-62881098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:251-604
               
               
               Cow position:chr11:17278745-17279092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:252-606
               
               
               Cow position:chr11:65409237-65409597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:252-623
               
               
               Cow position:chr11:13061312-13061669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:254-624
               
               
               Cow position:chr11:35881826-35881452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 89

               
               
               Conread position:255-417
               
               
               Cow position:chr11:4663131-4663284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:255-536
               
               
               Cow position:chr11:35874077-35874337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 101

               
               
               Conread position:255-624
               
               
               Cow position:chr11:66896882-66897250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:257-407
               
               
               Cow position:chr11:11469723-11469868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:258-404
               
               
               Cow position:chr11:21728357-21728499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:258-420
               
               
               Cow position:chr11:49396136-49396299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:258-452
               
               
               Cow position:chr11:48544349-48544166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:258-482
               
               
               Cow position:chr11:36182598-36182379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:258-601
               
               
               Cow position:chr11:11533990-11534325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:260-459
               
               
               Cow position:chr11:18484256-18484446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:260-498
               
               
               Cow position:chr11:51756228-51755990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:260-615
               
               
               Cow position:chr11:50197526-50197886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 294

               
               
               Conread position:260-621
               
               
               Cow position:chr11:18388952-18389307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:261-623
               
               
               Cow position:chr11:4207221-4206845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:262-614
               
               
               Cow position:chr11:62749838-62750191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 163

               
               
               Conread position:264-435
               
               
               Cow position:chr11:70836465-70836630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:264-592
               
               
               Cow position:chr11:44575830-44576157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:264-622
               
               
               Cow position:chr11:55117388-55117024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 216

               
               
               Conread position:265-384
               
               
               Cow position:chr11:69810811-69810692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-490
               
               
               Cow position:chr11:60302054-60302275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:268-421
               
               
               Cow position:chr11:81042460-81042313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:268-623
               
               
               Cow position:chr11:10294493-10294146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 64

               
               
               Conread position:269-417
               
               
               Cow position:chr11:26277190-26277335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:270-445
               
               
               Cow position:chr11:83230491-83230657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:270-452
               
               
               Cow position:chr11:3282951-3282779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:270-625
               
               
               Cow position:chr11:8840838-8841202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 280

               
               
               Conread position:275-428
               
               
               Cow position:chr11:44575597-44575443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:215-413
               
               
               Cow position:chr12:5940281-5940083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:217-452
               
               
               Cow position:chr12:3510499-3510266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:217-460
               
               
               Cow position:chr12:33458082-33457843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:217-520
               
               
               Cow position:chr12:47804092-47803788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:221-622
               
               
               Cow position:chr12:47486453-47486059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:223-449
               
               
               Cow position:chr12:25456048-25455818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:223-625
               
               
               Cow position:chr12:7977966-7977581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:224-437
               
               
               Cow position:chr12:22617044-22617261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:224-513
               
               
               Cow position:chr12:9465533-9465819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:226-520
               
               
               Cow position:chr12:17881789-17881505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:226-621
               
               
               Cow position:chr12:5800961-5800564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:226-622
               
               
               Cow position:chr12:27563451-27563852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:227-391
               
               
               Cow position:chr12:35378126-35377961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:227-420
               
               
               Cow position:chr12:5635522-5635715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:227-437
               
               
               Cow position:chr12:18388361-18388566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:227-468
               
               
               Cow position:chr12:26782809-26782566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:227-504
               
               
               Cow position:chr12:18577765-18577495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 27

               
               
               Conread position:227-623
               
               
               Cow position:chr12:19420008-19420410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:227-624
               
               
               Cow position:chr12:16359801-16359407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:228-446
               
               
               Cow position:chr12:41474013-41473802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:228-453
               
               
               Cow position:chr12:12982946-12983171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:228-623
               
               
               Cow position:chr12:180221-180617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-624
               
               
               Cow position:chr12:4008357-4008752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:229-553
               
               
               Cow position:chr12:30438166-30437852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:239-584
               
               
               Cow position:chr12:41083977-41083621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:239-592
               
               
               Cow position:chr12:6720233-6719885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 170

               
               
               Conread position:240-381
               
               
               Cow position:chr12:30210391-30210251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:240-393
               
               
               Cow position:chr12:6275190-6275344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-415
               
               
               Cow position:chr12:29161904-29162073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:240-451
               
               
               Cow position:chr12:40270183-40270384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:240-540
               
               
               Cow position:chr12:41737714-41737415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:240-579
               
               
               Cow position:chr12:42181229-42181564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:240-616
               
               
               Cow position:chr12:40910380-40910742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:240-624
               
               
               Cow position:chr12:3071019-3070640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:240-625
               
               
               Cow position:chr12:1885178-1885560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 231

               
               
               Conread position:240-625
               
               
               Cow position:chr12:25265170-25265555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 155

               
               
               Conread position:241-623
               
               
               Cow position:chr12:37770784-37770401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 87

               
               
               Conread position:242-348
               
               
               Cow position:chr12:32334100-32334207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr12:36544743-36544858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-368
               
               
               Cow position:chr12:42477661-42477534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr12:3906380-3906241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr12:25820523-25820660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:242-392
               
               
               Cow position:chr12:5658162-5658315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-392
               
               
               Cow position:chr12:24663023-24662876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr12:4809215-4809065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr12:23085647-23085495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr12:29770666-29770815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:242-414
               
               
               Cow position:chr12:4182783-4182957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr12:24107638-24107801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr12:25177676-25177862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr12:8710733-8710553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr12:31841349-31841150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:242-448
               
               
               Cow position:chr12:26223082-26223279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:242-449
               
               
               Cow position:chr12:3615793-3615594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr12:20777016-20777225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:242-450
               
               
               Cow position:chr12:5905961-5905760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr12:22881961-22881755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:242-451
               
               
               Cow position:chr12:5714535-5714331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr12:6164118-6164327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr12:26317369-26317161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):154, 50

               
               
               Conread position:242-455
               
               
               Cow position:chr12:42167555-42167344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr12:8123317-8123107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:242-457
               
               
               Cow position:chr12:4866729-4866512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:242-458
               
               
               Cow position:chr12:32391756-32391540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):97, 86

               
               
               Conread position:242-459
               
               
               Cow position:chr12:3056039-3055828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):184, 40

               
               
               Conread position:242-459
               
               
               Cow position:chr12:15530965-15530759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr12:29411584-29411790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-463
               
               
               Cow position:chr12:18518573-18518361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:242-463
               
               
               Cow position:chr12:21246614-21246836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-463
               
               
               Cow position:chr12:30728328-30728550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-468
               
               
               Cow position:chr12:30745622-30745398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr12:5135052-5134821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:242-495
               
               
               Cow position:chr12:28255241-28255489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):64, 219

               
               
               Conread position:242-499
               
               
               Cow position:chr12:1518384-1518644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 247

               
               
               Conread position:242-499
               
               
               Cow position:chr12:9710302-9710551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 48

               
               
               Conread position:242-503
               
               
               Cow position:chr12:18076441-18076186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:242-510
               
               
               Cow position:chr12:23440626-23440895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-532
               
               
               Cow position:chr12:25561277-25560992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr12:17001169-17000879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:242-544
               
               
               Cow position:chr12:3568852-3568559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-549
               
               
               Cow position:chr12:30224060-30224366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-555
               
               
               Cow position:chr12:30596376-30596064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:242-557
               
               
               Cow position:chr12:20326681-20326371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr12:4019282-4018958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:242-570
               
               
               Cow position:chr12:5631975-5632291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-577
               
               
               Cow position:chr12:40158331-40158660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:242-580
               
               
               Cow position:chr12:34473717-34474027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-589
               
               
               Cow position:chr12:30170575-30170226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 85

               
               
               Conread position:242-597
               
               
               Cow position:chr12:35213999-35213643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-602
               
               
               Cow position:chr12:34673434-34673778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-616
               
               
               Cow position:chr12:3579191-3578820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 180

               
               
               Conread position:242-620
               
               
               Cow position:chr12:14141432-14141056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chr12:5109908-5110288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr12:17008111-17007730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:242-623
               
               
               Cow position:chr12:18421018-18421396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr12:19691327-19691708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr12:19866149-19865772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:242-624
               
               
               Cow position:chr12:1773758-1774132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:242-624
               
               
               Cow position:chr12:19869376-19868995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 101

               
               
               Conread position:242-624
               
               
               Cow position:chr12:24440726-24440341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:242-624
               
               
               Cow position:chr12:36012708-36013096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 43

               
               
               Conread position:242-625
               
               
               Cow position:chr12:5273211-5273591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:242-625
               
               
               Cow position:chr12:5813635-5813252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 364

               
               
               Conread position:242-625
               
               
               Cow position:chr12:7873537-7873153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:12927758-12928129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 216

               
               
               Conread position:242-625
               
               
               Cow position:chr12:18055432-18055805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-625
               
               
               Cow position:chr12:21419363-21419749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:22572172-22571788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:22932652-22933035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 246

               
               
               Conread position:242-625
               
               
               Cow position:chr12:30010812-30011192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 255

               
               
               Conread position:242-625
               
               
               Cow position:chr12:30015919-30016299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 255

               
               
               Conread position:242-625
               
               
               Cow position:chr12:30143701-30143317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:31260271-31260655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:31741859-31742238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:242-625
               
               
               Cow position:chr12:37563165-37562781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr12:41710606-41710990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:42625459-42625844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr12:46124874-46124490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr12:731031-731231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:243-465
               
               
               Cow position:chr12:42275675-42275451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-504
               
               
               Cow position:chr12:18020763-18020501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:243-611
               
               
               Cow position:chr12:9561234-9561603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 305

               
               
               Conread position:244-393
               
               
               Cow position:chr12:150056-149906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-460
               
               
               Cow position:chr12:32714949-32714729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 101

               
               
               Conread position:244-480
               
               
               Cow position:chr12:34148444-34148678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:244-621
               
               
               Cow position:chr12:17031520-17031138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 101

               
               
               Conread position:244-625
               
               
               Cow position:chr12:3567497-3567116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:245-378
               
               
               Cow position:chr12:18021499-18021368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:245-379
               
               
               Cow position:chr12:18964023-18964155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:245-394
               
               
               Cow position:chr12:24180801-24180656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:245-406
               
               
               Cow position:chr12:23798007-23797850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):105, 50

               
               
               Conread position:245-409
               
               
               Cow position:chr12:35780019-35780183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-438
               
               
               Cow position:chr12:12178826-12178636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-450
               
               
               Cow position:chr12:19715136-19715324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-460
               
               
               Cow position:chr12:30805758-30805548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):184, 100

               
               
               Conread position:245-473
               
               
               Cow position:chr12:35771115-35771352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):56, 235

               
               
               Conread position:245-536
               
               
               Cow position:chr12:3880348-3880639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 245

               
               
               Conread position:245-544
               
               
               Cow position:chr12:28010995-28011290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:245-583
               
               
               Cow position:chr12:8868973-8869322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 100

               
               
               Conread position:245-594
               
               
               Cow position:chr12:29483987-29484326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 47

               
               
               Conread position:245-603
               
               
               Cow position:chr12:34385609-34385950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:245-624
               
               
               Cow position:chr12:19872331-19871969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:245-624
               
               
               Cow position:chr12:35368545-35368159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 97

               
               
               Conread position:245-625
               
               
               Cow position:chr12:18011340-18010965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:246-431
               
               
               Cow position:chr12:12699862-12700053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:246-445
               
               
               Cow position:chr12:11109669-11109478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:247-379
               
               
               Cow position:chr12:16310338-16310203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-383
               
               
               Cow position:chr12:31370030-31369893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:247-390
               
               
               Cow position:chr12:20071673-20071822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-456
               
               
               Cow position:chr12:42160644-42160856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 183

               
               
               Conread position:247-471
               
               
               Cow position:chr12:941539-941315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 196

               
               
               Conread position:247-557
               
               
               Cow position:chr12:45814357-45814668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:248-564
               
               
               Cow position:chr12:19508664-19508980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 215

               
               
               Conread position:249-390
               
               
               Cow position:chr12:13156578-13156436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:249-593
               
               
               Cow position:chr12:1246201-1245854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:250-458
               
               
               Cow position:chr12:6410833-6411033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:250-458
               
               
               Cow position:chr12:6687761-6687564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):176, 84

               
               
               Conread position:250-459
               
               
               Cow position:chr12:8943319-8943526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:251-461
               
               
               Cow position:chr12:3076718-3076931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-443
               
               
               Cow position:chr12:4134568-4134375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:252-509
               
               
               Cow position:chr12:33323598-33323854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:254-543
               
               
               Cow position:chr12:15429700-15429990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:255-429
               
               
               Cow position:chr12:30662053-30662226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:255-466
               
               
               Cow position:chr12:46635050-46635258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:258-372
               
               
               Cow position:chr12:17636524-17636411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:258-449
               
               
               Cow position:chr12:41091427-41091233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:258-451
               
               
               Cow position:chr12:25805219-25805408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:259-474
               
               
               Cow position:chr12:9229592-9229805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):199, 93

               
               
               Conread position:260-621
               
               
               Cow position:chr12:4593994-4593627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:262-623
               
               
               Cow position:chr12:21486471-21486131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 81

               
               
               Conread position:263-503
               
               
               Cow position:chr12:12976291-12976536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:263-624
               
               
               Cow position:chr12:37123397-37123045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:264-450
               
               
               Cow position:chr12:16605767-16605943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:264-579
               
               
               Cow position:chr12:13964885-13965197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:270-577
               
               
               Cow position:chr12:39486312-39486008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 153

               
               
               Conread position:66-446
               
               
               Cow position:chr13:50681946-50681569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):256, 0

               
               
               Conread position:215-438
               
               
               Cow position:chr13:20509742-20509966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:215-565
               
               
               Cow position:chr13:44626378-44626737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 269

               
               
               Conread position:215-623
               
               
               Cow position:chr13:19883026-19882622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:215-625
               
               
               Cow position:chr13:41253630-41254045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:217-543
               
               
               Cow position:chr13:8362738-8362409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:217-547
               
               
               Cow position:chr13:17977359-17977679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):243, 12

               
               
               Conread position:217-611
               
               
               Cow position:chr13:31813887-31814270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 37

               
               
               Conread position:217-623
               
               
               Cow position:chr13:2414039-2414441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:221-438
               
               
               Cow position:chr13:54093758-54093972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:222-446
               
               
               Cow position:chr13:20041952-20041717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:223-429
               
               
               Cow position:chr13:6975775-6975567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:223-447
               
               
               Cow position:chr13:2463217-2462991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:223-619
               
               
               Cow position:chr13:20649968-20649576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:223-624
               
               
               Cow position:chr13:54237371-54237755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:223-625
               
               
               Cow position:chr13:15446057-15446461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:224-348
               
               
               Cow position:chr13:8374755-8374626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-431
               
               
               Cow position:chr13:20536522-20536725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 125

               
               
               Conread position:224-527
               
               
               Cow position:chr13:44202016-44202311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 18

               
               
               Conread position:224-621
               
               
               Cow position:chr13:47312937-47313311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:224-624
               
               
               Cow position:chr13:24753899-24754308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:226-362
               
               
               Cow position:chr13:14870550-14870690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:226-384
               
               
               Cow position:chr13:49022847-49022692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:226-448
               
               
               Cow position:chr13:15974631-15974852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:226-456
               
               
               Cow position:chr13:5713319-5713544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:226-471
               
               
               Cow position:chr13:15041455-15041207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:226-624
               
               
               Cow position:chr13:16014832-16015233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:226-625
               
               
               Cow position:chr13:25249136-25248719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 199

               
               
               Conread position:227-450
               
               
               Cow position:chr13:9587567-9587340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:227-536
               
               
               Cow position:chr13:17622304-17622614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 152

               
               
               Conread position:228-421
               
               
               Cow position:chr13:37803905-37804094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:228-444
               
               
               Cow position:chr13:6060986-6060770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:228-593
               
               
               Cow position:chr13:151981-152329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 26

               
               
               Conread position:230-624
               
               
               Cow position:chr13:52894169-52894545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:232-619
               
               
               Cow position:chr13:35526179-35525800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 22

               
               
               Conread position:234-475
               
               
               Cow position:chr13:38278104-38277868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:236-367
               
               
               Cow position:chr13:54582911-54583042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:237-429
               
               
               Cow position:chr13:36877108-36877295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:237-593
               
               
               Cow position:chr13:46516095-46516449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:239-578
               
               
               Cow position:chr13:6153746-6153406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:240-420
               
               
               Cow position:chr13:11147340-11147520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:240-427
               
               
               Cow position:chr13:37592905-37592717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:240-434
               
               
               Cow position:chr13:42092401-42092215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 62

               
               
               Conread position:240-459
               
               
               Cow position:chr13:12614292-12614513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:240-508
               
               
               Cow position:chr13:15740101-15740365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 173

               
               
               Conread position:240-565
               
               
               Cow position:chr13:2774165-2774476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 125

               
               
               Conread position:240-566
               
               
               Cow position:chr13:23270174-23269853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:241-507
               
               
               Cow position:chr13:47756408-47756675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 221

               
               
               Conread position:241-524
               
               
               Cow position:chr13:57323492-57323773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:241-617
               
               
               Cow position:chr13:1231685-1232060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 80

               
               
               Conread position:242-340
               
               
               Cow position:chr13:10098951-10098853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr13:11381680-11381581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr13:18058206-18058108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr13:17569060-17568952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr13:37818710-37818602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-378
               
               
               Cow position:chr13:20473642-20473515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr13:5758301-5758167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr13:5082692-5082837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr13:52530787-52530939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr13:15991191-15991033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr13:15528992-15528828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr13:24230249-24230413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:242-416
               
               
               Cow position:chr13:53195251-53195082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-417
               
               
               Cow position:chr13:19022315-19022489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr13:51015147-51014966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr13:51108529-51108705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:242-427
               
               
               Cow position:chr13:22025669-22025480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):144, 103

               
               
               Conread position:242-429
               
               
               Cow position:chr13:12202406-12202587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr13:52199126-52199312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr13:54426486-54426673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-430
               
               
               Cow position:chr13:15192850-15192670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-435
               
               
               Cow position:chr13:20679379-20679572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:242-436
               
               
               Cow position:chr13:12207083-12207273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr13:13176691-13176889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr13:18172378-18172581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):198, 107

               
               
               Conread position:242-446
               
               
               Cow position:chr13:44322942-44323143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:242-448
               
               
               Cow position:chr13:7076298-7076498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:242-448
               
               
               Cow position:chr13:58210728-58210929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-449
               
               
               Cow position:chr13:20706166-20705960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr13:55674169-55673962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr13:20880886-20880681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):181, 124

               
               
               Conread position:242-452
               
               
               Cow position:chr13:54344810-54345023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:242-453
               
               
               Cow position:chr13:3315638-3315426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:242-455
               
               
               Cow position:chr13:24715283-24715486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:242-456
               
               
               Cow position:chr13:23960773-23960556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr13:35659793-35660004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr13:43184832-43184620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:242-458
               
               
               Cow position:chr13:23856252-23856467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr13:20839603-20839822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr13:45023172-45022955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 191

               
               
               Conread position:242-459
               
               
               Cow position:chr13:48037661-48037873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr13:37521340-37521126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr13:53574010-53574211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr13:55295583-55295361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:242-482
               
               
               Cow position:chr13:6079379-6079143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-482
               
               
               Cow position:chr13:52097662-52097899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-487
               
               
               Cow position:chr13:18852120-18852353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:242-498
               
               
               Cow position:chr13:43194217-43194464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-501
               
               
               Cow position:chr13:51821850-51821593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 74

               
               
               Conread position:242-509
               
               
               Cow position:chr13:34113492-34113228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:242-525
               
               
               Cow position:chr13:27525225-27524943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-532
               
               
               Cow position:chr13:21039562-21039277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:242-533
               
               
               Cow position:chr13:8473010-8473302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr13:38484871-38485148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:242-542
               
               
               Cow position:chr13:60156283-60156568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-543
               
               
               Cow position:chr13:13265848-13266138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-560
               
               
               Cow position:chr13:42690057-42690362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:242-561
               
               
               Cow position:chr13:17613383-17613701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:242-565
               
               
               Cow position:chr13:1042926-1042597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-568
               
               
               Cow position:chr13:53566635-53566946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr13:17158835-17158500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:242-579
               
               
               Cow position:chr13:890130-889810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 21

               
               
               Conread position:242-581
               
               
               Cow position:chr13:38329666-38330006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 258

               
               
               Conread position:242-584
               
               
               Cow position:chr13:17855413-17855750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-585
               
               
               Cow position:chr13:20820796-20820459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 98

               
               
               Conread position:242-590
               
               
               Cow position:chr13:6086862-6086517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-612
               
               
               Cow position:chr13:18835232-18835592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 103

               
               
               Conread position:242-617
               
               
               Cow position:chr13:16343726-16344114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):205, 74

               
               
               Conread position:242-617
               
               
               Cow position:chr13:34556297-34555937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:242-618
               
               
               Cow position:chr13:17821228-17820851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 186

               
               
               Conread position:242-620
               
               
               Cow position:chr13:645880-645501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr13:48251946-48251558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:242-621
               
               
               Cow position:chr13:311470-311847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 117

               
               
               Conread position:242-621
               
               
               Cow position:chr13:12619074-12618675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 279

               
               
               Conread position:242-621
               
               
               Cow position:chr13:12682503-12682126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 12

               
               
               Conread position:242-621
               
               
               Cow position:chr13:17800113-17800488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 40

               
               
               Conread position:242-621
               
               
               Cow position:chr13:19426656-19426283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr13:47007687-47007323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 21

               
               
               Conread position:242-622
               
               
               Cow position:chr13:12989883-12990260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:242-622
               
               
               Cow position:chr13:43151143-43151523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 153

               
               
               Conread position:242-623
               
               
               Cow position:chr13:971853-971479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 90

               
               
               Conread position:242-623
               
               
               Cow position:chr13:34263329-34262966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr13:36771380-36771005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr13:40943284-40943660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 173

               
               
               Conread position:242-623
               
               
               Cow position:chr13:51940776-51941151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 89

               
               
               Conread position:242-624
               
               
               Cow position:chr13:21235646-21235273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 44

               
               
               Conread position:242-624
               
               
               Cow position:chr13:30651217-30651593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr13:34375307-34375673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-624
               
               
               Cow position:chr13:37484232-37483846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 12

               
               
               Conread position:242-624
               
               
               Cow position:chr13:37517097-37516722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr13:671197-670814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 334

               
               
               Conread position:242-625
               
               
               Cow position:chr13:5497851-5498233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-625
               
               
               Cow position:chr13:8172441-8172826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr13:12546871-12546487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr13:13261044-13261434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr13:15869162-15869537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 60

               
               
               Conread position:242-625
               
               
               Cow position:chr13:16247697-16248075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:242-625
               
               
               Cow position:chr13:22085704-22085340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 85

               
               
               Conread position:242-625
               
               
               Cow position:chr13:24930864-24931249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:242-625
               
               
               Cow position:chr13:25531748-25531371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr13:34281716-34282099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr13:42086181-42086561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-625
               
               
               Cow position:chr13:43106560-43106944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr13:45353083-45353449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-625
               
               
               Cow position:chr13:54975770-54975386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr13:60430035-60429663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr13:60645632-60646015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-349
               
               
               Cow position:chr13:18696884-18696989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:243-350
               
               
               Cow position:chr13:17966168-17966061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-362
               
               
               Cow position:chr13:28652840-28652959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:243-471
               
               
               Cow position:chr13:54702228-54702455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:243-523
               
               
               Cow position:chr13:13089068-13089344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:243-524
               
               
               Cow position:chr13:17292092-17291816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:243-603
               
               
               Cow position:chr13:8783062-8782702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 274

               
               
               Conread position:243-623
               
               
               Cow position:chr13:52922133-52922518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 117

               
               
               Conread position:243-624
               
               
               Cow position:chr13:53536265-53535879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):219, 79

               
               
               Conread position:244-389
               
               
               Cow position:chr13:49503489-49503345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:244-508
               
               
               Cow position:chr13:14927277-14927539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:244-579
               
               
               Cow position:chr13:41806817-41807138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 146

               
               
               Conread position:244-621
               
               
               Cow position:chr13:3701480-3701846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr13:18941921-18942051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:245-383
               
               
               Cow position:chr13:15110362-15110501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr13:55583236-55583386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:245-395
               
               
               Cow position:chr13:13338900-13339053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-395
               
               
               Cow position:chr13:14771498-14771650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-410
               
               
               Cow position:chr13:9593551-9593711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:245-416
               
               
               Cow position:chr13:2192753-2192918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:245-441
               
               
               Cow position:chr13:18551487-18551683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:245-442
               
               
               Cow position:chr13:55316146-55315953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:245-450
               
               
               Cow position:chr13:12282877-12283079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:245-450
               
               
               Cow position:chr13:22115749-22115947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 57

               
               
               Conread position:245-569
               
               
               Cow position:chr13:32717831-32717510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 36

               
               
               Conread position:245-570
               
               
               Cow position:chr13:10989033-10988710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 169

               
               
               Conread position:245-579
               
               
               Cow position:chr13:563100-562764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:245-579
               
               
               Cow position:chr13:30798765-30799095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:245-616
               
               
               Cow position:chr13:8609506-8609151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:245-616
               
               
               Cow position:chr13:21155450-21155084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 204

               
               
               Conread position:245-617
               
               
               Cow position:chr13:60974125-60974476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:245-621
               
               
               Cow position:chr13:52585979-52585610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:245-624
               
               
               Cow position:chr13:20563038-20563409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:245-624
               
               
               Cow position:chr13:49805013-49805385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:246-451
               
               
               Cow position:chr13:54331059-54331264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):97, 102

               
               
               Conread position:246-471
               
               
               Cow position:chr13:46311984-46311769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:246-495
               
               
               Cow position:chr13:13306139-13306393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 243

               
               
               Conread position:246-623
               
               
               Cow position:chr13:20863970-20863605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 56

               
               
               Conread position:247-376
               
               
               Cow position:chr13:7790060-7790184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-410
               
               
               Cow position:chr13:19223690-19223853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-416
               
               
               Cow position:chr13:52228058-52227890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:247-428
               
               
               Cow position:chr13:33054350-33054173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:247-435
               
               
               Cow position:chr13:43480102-43480290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-450
               
               
               Cow position:chr13:24155588-24155784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:247-454
               
               
               Cow position:chr13:15884975-15884766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):71, 179

               
               
               Conread position:247-455
               
               
               Cow position:chr13:23167052-23166848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:247-458
               
               
               Cow position:chr13:40722663-40722458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:247-463
               
               
               Cow position:chr13:54381892-54381678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-564
               
               
               Cow position:chr13:16292586-16292899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:247-579
               
               
               Cow position:chr13:16269968-16270309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:247-624
               
               
               Cow position:chr13:6616707-6616330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:247-625
               
               
               Cow position:chr13:24767430-24767834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 324

               
               
               Conread position:247-625
               
               
               Cow position:chr13:27027730-27027359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:248-346
               
               
               Cow position:chr13:16525263-16525166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:248-621
               
               
               Cow position:chr13:61976919-61976553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:249-623
               
               
               Cow position:chr13:4552848-4553212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:249-623
               
               
               Cow position:chr13:25062455-25062835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 81

               
               
               Conread position:250-621
               
               
               Cow position:chr13:7663376-7663018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 94

               
               
               Conread position:250-621
               
               
               Cow position:chr13:43762216-43762586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:252-430
               
               
               Cow position:chr13:17439720-17439542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-437
               
               
               Cow position:chr13:11955059-11954883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-469
               
               
               Cow position:chr13:18166783-18166993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:252-543
               
               
               Cow position:chr13:43139177-43138892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:252-565
               
               
               Cow position:chr13:39952367-39952055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 161

               
               
               Conread position:252-620
               
               
               Cow position:chr13:37947953-37947601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:253-458
               
               
               Cow position:chr13:11061036-11061234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:253-623
               
               
               Cow position:chr13:3003492-3003861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 197

               
               
               Conread position:255-520
               
               
               Cow position:chr13:37381857-37382125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:256-407
               
               
               Cow position:chr13:547537-547689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:258-403
               
               
               Cow position:chr13:8652383-8652240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:258-519
               
               
               Cow position:chr13:34035415-34035681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:258-564
               
               
               Cow position:chr13:11820650-11820935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:259-391
               
               
               Cow position:chr13:47186281-47186409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:260-528
               
               
               Cow position:chr13:46525388-46525119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:260-615
               
               
               Cow position:chr13:56155101-56154756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 73

               
               
               Conread position:264-506
               
               
               Cow position:chr13:15233976-15234206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:266-546
               
               
               Cow position:chr13:32017462-32017183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:268-508
               
               
               Cow position:chr13:9142356-9142584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:270-371
               
               
               Cow position:chr13:15903084-15903182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:270-460
               
               
               Cow position:chr13:24376557-24376743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:272-384
               
               
               Cow position:chr13:966143-966255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-553
               
               
               Cow position:chr14:12614031-12613716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:216-398
               
               
               Cow position:chr14:1978006-1977829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:216-570
               
               
               Cow position:chr14:8101857-8102199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:216-623
               
               
               Cow position:chr14:6419239-6418835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:216-623
               
               
               Cow position:chr14:22381486-22381079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:216-625
               
               
               Cow position:chr14:41479595-41479182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:217-389
               
               
               Cow position:chr14:28803675-28803498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:217-452
               
               
               Cow position:chr14:14187399-14187637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:217-490
               
               
               Cow position:chr14:46178058-46178337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:217-529
               
               
               Cow position:chr14:20712623-20712301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:221-608
               
               
               Cow position:chr14:19863362-19862981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:222-584
               
               
               Cow position:chr14:43453106-43452741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:223-454
               
               
               Cow position:chr14:4109400-4109167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:223-625
               
               
               Cow position:chr14:12244309-12243911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:223-625
               
               
               Cow position:chr14:28378433-28378838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:224-591
               
               
               Cow position:chr14:12250123-12249758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:224-621
               
               
               Cow position:chr14:34907371-34906971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:225-438
               
               
               Cow position:chr14:4227130-4226905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:226-455
               
               
               Cow position:chr14:35018675-35018449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:226-459
               
               
               Cow position:chr14:23712768-23712997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:226-478
               
               
               Cow position:chr14:5835985-5836234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):192, 28

               
               
               Conread position:226-618
               
               
               Cow position:chr14:25779173-25779571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:226-619
               
               
               Cow position:chr14:24581007-24581409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 16

               
               
               Conread position:226-623
               
               
               Cow position:chr14:38921027-38921392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:226-624
               
               
               Cow position:chr14:13473592-13473984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:226-624
               
               
               Cow position:chr14:25403858-25403471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:226-625
               
               
               Cow position:chr14:20600462-20600863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:227-381
               
               
               Cow position:chr14:28924462-28924618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 119

               
               
               Conread position:227-456
               
               
               Cow position:chr14:33714600-33714380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-496
               
               
               Cow position:chr14:43035961-43036221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:228-455
               
               
               Cow position:chr14:14466394-14466172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):215, 74

               
               
               Conread position:228-456
               
               
               Cow position:chr14:38379100-38379328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:230-623
               
               
               Cow position:chr14:20666939-20666546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 187

               
               
               Conread position:231-468
               
               
               Cow position:chr14:40183126-40183364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:231-622
               
               
               Cow position:chr14:18941215-18940837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:232-623
               
               
               Cow position:chr14:33462247-33462630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:235-382
               
               
               Cow position:chr14:25986607-25986753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:239-435
               
               
               Cow position:chr14:24786035-24786219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr14:20826570-20826696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:240-391
               
               
               Cow position:chr14:27919643-27919495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:240-405
               
               
               Cow position:chr14:28004071-28004237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-619
               
               
               Cow position:chr14:36555063-36554687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 186

               
               
               Conread position:241-454
               
               
               Cow position:chr14:36709216-36709428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:241-491
               
               
               Cow position:chr14:31888606-31888369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:241-624
               
               
               Cow position:chr14:44237610-44237224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:241-625
               
               
               Cow position:chr14:46074678-46075062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:242-340
               
               
               Cow position:chr14:15492693-15492791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-356
               
               
               Cow position:chr14:41966339-41966451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-360
               
               
               Cow position:chr14:19394456-19394574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:242-384
               
               
               Cow position:chr14:22952897-22952762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-387
               
               
               Cow position:chr14:20301915-20301768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:242-393
               
               
               Cow position:chr14:3867259-3867411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr14:30453728-30453577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-393
               
               
               Cow position:chr14:43416194-43416042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-398
               
               
               Cow position:chr14:11846592-11846751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:242-398
               
               
               Cow position:chr14:39037331-39037479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:242-401
               
               
               Cow position:chr14:8750172-8750328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):153, 103

               
               
               Conread position:242-405
               
               
               Cow position:chr14:33309410-33309252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:242-408
               
               
               Cow position:chr14:28115089-28114923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr14:38338048-38337874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):163, 21

               
               
               Conread position:242-428
               
               
               Cow position:chr14:19129606-19129791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:242-437
               
               
               Cow position:chr14:8006230-8006049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:242-446
               
               
               Cow position:chr14:11820026-11819826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr14:48740774-48740588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-447
               
               
               Cow position:chr14:37131752-37131957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr14:5630258-5630466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):190, 93

               
               
               Conread position:242-452
               
               
               Cow position:chr14:7482152-7482359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr14:15032854-15033060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 93

               
               
               Conread position:242-452
               
               
               Cow position:chr14:41127991-41128194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr14:3564378-3564583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 55

               
               
               Conread position:242-458
               
               
               Cow position:chr14:33791283-33791499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-462
               
               
               Cow position:chr14:33205042-33204820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-469
               
               
               Cow position:chr14:22966849-22967072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:242-498
               
               
               Cow position:chr14:7290895-7291141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 53

               
               
               Conread position:242-499
               
               
               Cow position:chr14:48950721-48950979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr14:39770136-39769863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 181

               
               
               Conread position:242-508
               
               
               Cow position:chr14:48427170-48427436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr14:20468011-20467733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 123

               
               
               Conread position:242-534
               
               
               Cow position:chr14:33828257-33828530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:242-542
               
               
               Cow position:chr14:40201678-40201383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-546
               
               
               Cow position:chr14:45923502-45923197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-549
               
               
               Cow position:chr14:42154867-42154561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:242-579
               
               
               Cow position:chr14:29771867-29772200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:242-581
               
               
               Cow position:chr14:27591857-27591516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:242-587
               
               
               Cow position:chr14:41210952-41211308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 21

               
               
               Conread position:242-590
               
               
               Cow position:chr14:40253317-40253656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:242-616
               
               
               Cow position:chr14:50589287-50588933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:242-618
               
               
               Cow position:chr14:24991919-24992282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:242-619
               
               
               Cow position:chr14:23253532-23253906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr14:8784281-8784647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr14:26442243-26441853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 52

               
               
               Conread position:242-621
               
               
               Cow position:chr14:27848297-27848672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr14:8754425-8754801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:242-622
               
               
               Cow position:chr14:15054892-15054521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr14:27312523-27312912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:242-622
               
               
               Cow position:chr14:45967443-45967061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr14:41325340-41324965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 69

               
               
               Conread position:242-623
               
               
               Cow position:chr14:41749664-41749298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:242-623
               
               
               Cow position:chr14:43046245-43046622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 83

               
               
               Conread position:242-623
               
               
               Cow position:chr14:47584559-47584174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr14:38296184-38295816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:242-624
               
               
               Cow position:chr14:46735401-46735792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 270

               
               
               Conread position:242-625
               
               
               Cow position:chr14:1727971-1727587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:5502065-5501675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 313

               
               
               Conread position:242-625
               
               
               Cow position:chr14:8985499-8985115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:9875490-9875862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr14:10711352-10710968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr14:13810034-13810440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr14:14764788-14764404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:19533267-19533652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:20454723-20455107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:21964215-21964593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:242-625
               
               
               Cow position:chr14:24896497-24896112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:28102825-28103191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:242-625
               
               
               Cow position:chr14:32583209-32583593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr14:38436839-38436459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-625
               
               
               Cow position:chr14:39434163-39433804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 74

               
               
               Conread position:242-625
               
               
               Cow position:chr14:47870989-47871373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr14:50140115-50140493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 60

               
               
               Conread position:243-356
               
               
               Cow position:chr14:16256866-16256977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:243-366
               
               
               Cow position:chr14:24608064-24608187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 101

               
               
               Conread position:243-406
               
               
               Cow position:chr14:1646094-1645931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-418
               
               
               Cow position:chr14:19372439-19372613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:243-427
               
               
               Cow position:chr14:28097962-28098129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr14:27305250-27305467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-471
               
               
               Cow position:chr14:26880709-26880483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:243-498
               
               
               Cow position:chr14:40433018-40433272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):249, 91

               
               
               Conread position:243-595
               
               
               Cow position:chr14:9743886-9744238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:243-602
               
               
               Cow position:chr14:22989132-22989488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr14:12546488-12546114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 57

               
               
               Conread position:243-623
               
               
               Cow position:chr14:20640529-20640146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr14:38865383-38865768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr14:44368498-44368115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr14:13042855-13043005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:244-393
               
               
               Cow position:chr14:1663261-1663112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 104

               
               
               Conread position:244-625
               
               
               Cow position:chr14:30580643-30581023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:244-625
               
               
               Cow position:chr14:34345443-34345824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 302

               
               
               Conread position:245-370
               
               
               Cow position:chr14:16033108-16033232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:245-406
               
               
               Cow position:chr14:20384885-20384723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:245-406
               
               
               Cow position:chr14:24387548-24387709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-427
               
               
               Cow position:chr14:17841189-17841008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr14:37884313-37884130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:245-436
               
               
               Cow position:chr14:23464716-23464527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:245-450
               
               
               Cow position:chr14:15913448-15913252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:245-452
               
               
               Cow position:chr14:14280512-14280721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:245-477
               
               
               Cow position:chr14:11641470-11641247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:245-512
               
               
               Cow position:chr14:41809556-41809288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:245-567
               
               
               Cow position:chr14:21284723-21285041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 181

               
               
               Conread position:245-619
               
               
               Cow position:chr14:17094556-17094181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr14:34199749-34199358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:245-623
               
               
               Cow position:chr14:45605191-45605572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 100

               
               
               Conread position:245-623
               
               
               Cow position:chr14:50027320-50027685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:245-624
               
               
               Cow position:chr14:17755660-17756035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:245-625
               
               
               Cow position:chr14:30592439-30592816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 229

               
               
               Conread position:245-625
               
               
               Cow position:chr14:41471872-41471491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:246-413
               
               
               Cow position:chr14:24840075-24839913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:246-507
               
               
               Cow position:chr14:17013605-17013867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:246-543
               
               
               Cow position:chr14:20016604-20016313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:247-380
               
               
               Cow position:chr14:26490641-26490512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:247-384
               
               
               Cow position:chr14:14949111-14948974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-384
               
               
               Cow position:chr14:26191000-26190860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:247-398
               
               
               Cow position:chr14:12667831-12667982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-441
               
               
               Cow position:chr14:24922203-24922399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr14:44878685-44878475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:247-460
               
               
               Cow position:chr14:5222187-5221975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-559
               
               
               Cow position:chr14:3878555-3878861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:247-602
               
               
               Cow position:chr14:20010207-20009865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 82

               
               
               Conread position:247-619
               
               
               Cow position:chr14:44742283-44741915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 114

               
               
               Conread position:247-623
               
               
               Cow position:chr14:40230537-40230163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:247-624
               
               
               Cow position:chr14:6599851-6599476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-624
               
               
               Cow position:chr14:31734750-31734380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:248-451
               
               
               Cow position:chr14:34330647-34330842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:249-389
               
               
               Cow position:chr14:20110619-20110479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-440
               
               
               Cow position:chr14:47385748-47385927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:250-443
               
               
               Cow position:chr14:10858536-10858726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:250-624
               
               
               Cow position:chr14:18904507-18904127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 304

               
               
               Conread position:251-471
               
               
               Cow position:chr14:24236929-24237141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:251-506
               
               
               Cow position:chr14:18345628-18345375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 161

               
               
               Conread position:252-429
               
               
               Cow position:chr14:6234162-6233982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:252-458
               
               
               Cow position:chr14:48412773-48412567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-623
               
               
               Cow position:chr14:12484193-12483838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 58

               
               
               Conread position:252-624
               
               
               Cow position:chr14:6490599-6490230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:253-618
               
               
               Cow position:chr14:9020135-9020498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:253-620
               
               
               Cow position:chr14:42918197-42918576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 92

               
               
               Conread position:253-624
               
               
               Cow position:chr14:33538815-33538452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:254-517
               
               
               Cow position:chr14:34083044-34082790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:254-625
               
               
               Cow position:chr14:41756368-41756734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:255-625
               
               
               Cow position:chr14:21201729-21201351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:256-427
               
               
               Cow position:chr14:29632775-29632604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-374
               
               
               Cow position:chr14:14580979-14581094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:258-421
               
               
               Cow position:chr14:47036684-47036527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:258-449
               
               
               Cow position:chr14:32452365-32452562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:258-480
               
               
               Cow position:chr14:37934503-37934278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:258-600
               
               
               Cow position:chr14:9029564-9029233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 39

               
               
               Conread position:260-412
               
               
               Cow position:chr14:13846102-13846250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:260-529
               
               
               Cow position:chr14:33247319-33247045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:260-536
               
               
               Cow position:chr14:34020801-34021073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 194

               
               
               Conread position:262-498
               
               
               Cow position:chr14:30926819-30927043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):165, 104

               
               
               Conread position:264-539
               
               
               Cow position:chr14:42330470-42330743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:264-563
               
               
               Cow position:chr14:38168801-38169091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 54

               
               
               Conread position:265-427
               
               
               Cow position:chr14:17397484-17397326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:266-602
               
               
               Cow position:chr14:34096470-34096142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 67

               
               
               Conread position:267-623
               
               
               Cow position:chr14:21534913-21534572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:270-621
               
               
               Cow position:chr14:36775730-36776076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 63

               
               
               Conread position:274-456
               
               
               Cow position:chr14:45677353-45677531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:215-507
               
               
               Cow position:chr15:22939211-22938931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:216-456
               
               
               Cow position:chr15:12785538-12785790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:217-623
               
               
               Cow position:chr15:24967904-24968308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:217-624
               
               
               Cow position:chr15:21389055-21388650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:217-625
               
               
               Cow position:chr15:3893438-3893030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:218-623
               
               
               Cow position:chr15:3051466-3051867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:222-409
               
               
               Cow position:chr15:225685-225496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:223-483
               
               
               Cow position:chr15:7827918-7827655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:223-486
               
               
               Cow position:chr15:6046193-6045931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:223-488
               
               
               Cow position:chr15:21421058-21421328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:223-624
               
               
               Cow position:chr15:47843128-47842746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:224-381
               
               
               Cow position:chr15:32324084-32323926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:224-459
               
               
               Cow position:chr15:40009530-40009293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:225-458
               
               
               Cow position:chr15:36782204-36781980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:226-454
               
               
               Cow position:chr15:23768136-23767913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:226-579
               
               
               Cow position:chr15:46563363-46563001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:226-619
               
               
               Cow position:chr15:9871291-9870898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 202

               
               
               Conread position:227-442
               
               
               Cow position:chr15:39599565-39599780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:227-624
               
               
               Cow position:chr15:144112-143711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:227-625
               
               
               Cow position:chr15:15041302-15040914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:229-383
               
               
               Cow position:chr15:38877176-38877022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:240-372
               
               
               Cow position:chr15:38837887-38838020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-384
               
               
               Cow position:chr15:5044314-5044173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:240-407
               
               
               Cow position:chr15:8007120-8007286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:240-471
               
               
               Cow position:chr15:50322737-50322965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):191, 101

               
               
               Conread position:240-482
               
               
               Cow position:chr15:36621553-36621799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:240-497
               
               
               Cow position:chr15:52739983-52739729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:240-536
               
               
               Cow position:chr15:13387221-13387514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:240-623
               
               
               Cow position:chr15:4138274-4138651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:240-623
               
               
               Cow position:chr15:16112541-16112928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 185

               
               
               Conread position:240-625
               
               
               Cow position:chr15:24616713-24617086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:240-625
               
               
               Cow position:chr15:38162150-38162530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:241-341
               
               
               Cow position:chr15:37205187-37205287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-430
               
               
               Cow position:chr15:11629737-11629554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:241-597
               
               
               Cow position:chr15:8578984-8578633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:242-343
               
               
               Cow position:chr15:8354187-8354288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr15:38103748-38103612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr15:7535523-7535386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:242-386
               
               
               Cow position:chr15:16657635-16657774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-390
               
               
               Cow position:chr15:21898329-21898180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-390
               
               
               Cow position:chr15:36773556-36773406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr15:23696767-23696624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-399
               
               
               Cow position:chr15:25907061-25907209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):120, 51

               
               
               Conread position:242-402
               
               
               Cow position:chr15:11646344-11646189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr15:12723230-12723401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:242-421
               
               
               Cow position:chr15:11995883-11995706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):65, 127

               
               
               Conread position:242-424
               
               
               Cow position:chr15:39598386-39598560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr15:26903340-26903519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):179, 87

               
               
               Conread position:242-430
               
               
               Cow position:chr15:33525560-33525754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-434
               
               
               Cow position:chr15:8027545-8027737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 190

               
               
               Conread position:242-437
               
               
               Cow position:chr15:30001828-30002024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 183

               
               
               Conread position:242-441
               
               
               Cow position:chr15:10245861-10245670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr15:6586572-6586369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr15:11658425-11658216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr15:4535054-4535257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:242-452
               
               
               Cow position:chr15:14020616-14020821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr15:11011461-11011252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr15:16823081-16823293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):140, 115

               
               
               Conread position:242-459
               
               
               Cow position:chr15:21893925-21894139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr15:45216964-45217179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):181, 75

               
               
               Conread position:242-460
               
               
               Cow position:chr15:5730085-5730295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-468
               
               
               Cow position:chr15:36259459-36259225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):118, 96

               
               
               Conread position:242-473
               
               
               Cow position:chr15:11363034-11362807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):209, 103

               
               
               Conread position:242-502
               
               
               Cow position:chr15:8962153-8962397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr15:19733505-19733768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 153

               
               
               Conread position:242-508
               
               
               Cow position:chr15:27890818-27890551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-509
               
               
               Cow position:chr15:13515512-13515776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:242-525
               
               
               Cow position:chr15:40999925-40999629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr15:17870142-17869868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:242-535
               
               
               Cow position:chr15:25511034-25510740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-535
               
               
               Cow position:chr15:47279997-47279725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:242-562
               
               
               Cow position:chr15:19369674-19369991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-567
               
               
               Cow position:chr15:11270480-11270154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-567
               
               
               Cow position:chr15:22759182-22759508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-569
               
               
               Cow position:chr15:34104414-34104733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:242-570
               
               
               Cow position:chr15:24074876-24074545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 278

               
               
               Conread position:242-579
               
               
               Cow position:chr15:50177256-50177573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):217, 55

               
               
               Conread position:242-590
               
               
               Cow position:chr15:5571495-5571145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:242-610
               
               
               Cow position:chr15:20171881-20172251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:242-612
               
               
               Cow position:chr15:10456869-10456490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 125

               
               
               Conread position:242-616
               
               
               Cow position:chr15:6530704-6530324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:242-619
               
               
               Cow position:chr15:20351974-20352359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:242-619
               
               
               Cow position:chr15:22918196-22918577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr15:43827630-43827259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 126

               
               
               Conread position:242-621
               
               
               Cow position:chr15:1083232-1082868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr15:12443353-12442976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-621
               
               
               Cow position:chr15:15707967-15707600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr15:30047399-30047018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 346

               
               
               Conread position:242-621
               
               
               Cow position:chr15:31767416-31767796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:242-623
               
               
               Cow position:chr15:14870887-14871260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 30

               
               
               Conread position:242-623
               
               
               Cow position:chr15:22532381-22532760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 228

               
               
               Conread position:242-623
               
               
               Cow position:chr15:24044953-24044571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 12

               
               
               Conread position:242-624
               
               
               Cow position:chr15:15881072-15881442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 183

               
               
               Conread position:242-624
               
               
               Cow position:chr15:22168201-22168585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr15:47821953-47822307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr15:28479-28863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr15:441961-442344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr15:4676865-4676481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr15:10335900-10336270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr15:24797668-24797274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 84

               
               
               Conread position:242-625
               
               
               Cow position:chr15:30810115-30809738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:242-625
               
               
               Cow position:chr15:32742304-32741924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:242-625
               
               
               Cow position:chr15:33376669-33376283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr15:40798285-40797907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 173

               
               
               Conread position:242-625
               
               
               Cow position:chr15:52757991-52758374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:243-416
               
               
               Cow position:chr15:43765672-43765848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:243-429
               
               
               Cow position:chr15:12304786-12304968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:243-429
               
               
               Cow position:chr15:17763052-17763226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:243-436
               
               
               Cow position:chr15:26158472-26158284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:243-463
               
               
               Cow position:chr15:43913946-43913723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:243-471
               
               
               Cow position:chr15:4093788-4093555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:243-508
               
               
               Cow position:chr15:23487023-23486767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:243-508
               
               
               Cow position:chr15:53680618-53680365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:243-560
               
               
               Cow position:chr15:33306254-33306564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:243-566
               
               
               Cow position:chr15:20391130-20390826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-621
               
               
               Cow position:chr15:41583055-41583434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 101

               
               
               Conread position:243-621
               
               
               Cow position:chr15:50302328-50302721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 102

               
               
               Conread position:244-425
               
               
               Cow position:chr15:26573523-26573711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-365
               
               
               Cow position:chr15:45273152-45273274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr15:16667352-16667208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-394
               
               
               Cow position:chr15:44436877-44437026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:245-396
               
               
               Cow position:chr15:34145009-34144861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-398
               
               
               Cow position:chr15:1804189-1804032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-398
               
               
               Cow position:chr15:9526330-9526172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:245-406
               
               
               Cow position:chr15:44658503-44658664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:245-430
               
               
               Cow position:chr15:5632829-5633000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:245-437
               
               
               Cow position:chr15:31857735-31857927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-444
               
               
               Cow position:chr15:8665445-8665240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 125

               
               
               Conread position:245-451
               
               
               Cow position:chr15:35642165-35642369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:245-453
               
               
               Cow position:chr15:50341267-50341459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr15:51427677-51427467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:245-459
               
               
               Cow position:chr15:6657243-6657462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:245-459
               
               
               Cow position:chr15:9928506-9928715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):206, 71

               
               
               Conread position:245-459
               
               
               Cow position:chr15:35417481-35417265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:245-472
               
               
               Cow position:chr15:20725471-20725247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:245-519
               
               
               Cow position:chr15:27281014-27281279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-538
               
               
               Cow position:chr15:30982072-30982349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 5

               
               
               Conread position:245-543
               
               
               Cow position:chr15:49738899-49738606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:245-620
               
               
               Cow position:chr15:18206366-18206001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-621
               
               
               Cow position:chr15:1329956-1329587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 185

               
               
               Conread position:245-622
               
               
               Cow position:chr15:33285025-33285387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:245-624
               
               
               Cow position:chr15:608291-608677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:245-624
               
               
               Cow position:chr15:5498885-5498510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:245-624
               
               
               Cow position:chr15:19403127-19403508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:245-624
               
               
               Cow position:chr15:21832281-21831902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:245-624
               
               
               Cow position:chr15:52778383-52778013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:246-429
               
               
               Cow position:chr15:38394565-38394747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:246-565
               
               
               Cow position:chr15:43626615-43626919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:247-458
               
               
               Cow position:chr15:19771280-19771483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:247-458
               
               
               Cow position:chr15:37931611-37931413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr15:21908084-21908291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 98

               
               
               Conread position:247-468
               
               
               Cow position:chr15:29340212-29340429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 113

               
               
               Conread position:247-543
               
               
               Cow position:chr15:45269-44979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:247-582
               
               
               Cow position:chr15:32979891-32979551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-601
               
               
               Cow position:chr15:45479153-45479507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:247-624
               
               
               Cow position:chr15:33314300-33313924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:247-624
               
               
               Cow position:chr15:42143004-42143371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:247-625
               
               
               Cow position:chr15:37381770-37382146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 198

               
               
               Conread position:248-488
               
               
               Cow position:chr15:16307562-16307802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-623
               
               
               Cow position:chr15:28924616-28924246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:250-624
               
               
               Cow position:chr15:33976537-33976170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 95

               
               
               Conread position:252-457
               
               
               Cow position:chr15:41620034-41619831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:252-460
               
               
               Cow position:chr15:240995-241206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-569
               
               
               Cow position:chr15:23798376-23798055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 225

               
               
               Conread position:252-623
               
               
               Cow position:chr15:14505579-14505946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 120

               
               
               Conread position:254-405
               
               
               Cow position:chr15:1722695-1722548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:255-520
               
               
               Cow position:chr15:46611083-46611336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:258-425
               
               
               Cow position:chr15:33243305-33243481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:258-461
               
               
               Cow position:chr15:51898389-51898583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:258-528
               
               
               Cow position:chr15:30820678-30820397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:259-581
               
               
               Cow position:chr15:22531222-22531534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:260-564
               
               
               Cow position:chr15:16616361-16616655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:260-603
               
               
               Cow position:chr15:20370295-20369965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 75

               
               
               Conread position:264-449
               
               
               Cow position:chr15:39405895-39406081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:264-483
               
               
               Cow position:chr15:26404440-26404650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:264-623
               
               
               Cow position:chr15:28038922-28039265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:264-625
               
               
               Cow position:chr15:16583540-16583183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 66

               
               
               Conread position:264-625
               
               
               Cow position:chr15:20534286-20533927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:265-623
               
               
               Cow position:chr15:24822212-24821857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 147

               
               
               Conread position:265-623
               
               
               Cow position:chr15:31085702-31086077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:267-623
               
               
               Cow position:chr15:21903278-21902922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:268-619
               
               
               Cow position:chr15:363193-363530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:268-621
               
               
               Cow position:chr15:41087696-41087345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:270-393
               
               
               Cow position:chr15:24128197-24128321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:206-566
               
               
               Cow position:chr16:12633874-12633535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:215-421
               
               
               Cow position:chr16:33790854-33791074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:216-614
               
               
               Cow position:chr16:13306891-13307288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:216-620
               
               
               Cow position:chr16:18757863-18758268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:216-624
               
               
               Cow position:chr16:49125552-49125952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:217-430
               
               
               Cow position:chr16:56082387-56082599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:217-463
               
               
               Cow position:chr16:20476509-20476260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:220-624
               
               
               Cow position:chr16:46552775-46552374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:221-621
               
               
               Cow position:chr16:6379135-6379537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 151

               
               
               Conread position:223-450
               
               
               Cow position:chr16:20025416-20025185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:223-618
               
               
               Cow position:chr16:56912747-56913138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:223-623
               
               
               Cow position:chr16:47242925-47242523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:223-625
               
               
               Cow position:chr16:2223432-2223838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 242

               
               
               Conread position:223-625
               
               
               Cow position:chr16:48086900-48087303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:224-362
               
               
               Cow position:chr16:31348799-31348942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr16:38119477-38119629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:224-391
               
               
               Cow position:chr16:52275165-52275330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:224-415
               
               
               Cow position:chr16:7928557-7928368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 134

               
               
               Conread position:224-468
               
               
               Cow position:chr16:39417149-39417384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:225-416
               
               
               Cow position:chr16:43105547-43105738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:226-357
               
               
               Cow position:chr16:50521444-50521308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:226-403
               
               
               Cow position:chr16:8193417-8193233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:226-427
               
               
               Cow position:chr16:45535145-45534947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:226-450
               
               
               Cow position:chr16:22868210-22868436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:226-560
               
               
               Cow position:chr16:22842093-22842438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:226-624
               
               
               Cow position:chr16:29159095-29158699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:226-625
               
               
               Cow position:chr16:4699018-4699387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:227-394
               
               
               Cow position:chr16:10462557-10462720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:227-481
               
               
               Cow position:chr16:43505837-43506090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:227-528
               
               
               Cow position:chr16:11790977-11790664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 0

               
               
               Conread position:227-625
               
               
               Cow position:chr16:45609956-45609552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:228-343
               
               
               Cow position:chr16:12320184-12320066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:228-349
               
               
               Cow position:chr16:25386939-25386819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:228-445
               
               
               Cow position:chr16:43661407-43661198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:228-474
               
               
               Cow position:chr16:47820531-47820288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:228-593
               
               
               Cow position:chr16:33508025-33507664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 26

               
               
               Conread position:228-604
               
               
               Cow position:chr16:13068660-13069022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:228-619
               
               
               Cow position:chr16:54579130-54578746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:229-427
               
               
               Cow position:chr16:11422269-11422074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):175, 127

               
               
               Conread position:230-570
               
               
               Cow position:chr16:47098043-47098362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:230-621
               
               
               Cow position:chr16:11568158-11568539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:238-484
               
               
               Cow position:chr16:14361055-14360814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:239-404
               
               
               Cow position:chr16:29399949-29399781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:239-433
               
               
               Cow position:chr16:10148229-10148039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:239-472
               
               
               Cow position:chr16:29380205-29379973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:239-525
               
               
               Cow position:chr16:33645961-33645686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:239-570
               
               
               Cow position:chr16:4525646-4525974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:239-623
               
               
               Cow position:chr16:17665586-17665209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:240-356
               
               
               Cow position:chr16:9136124-9136007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-380
               
               
               Cow position:chr16:41530343-41530480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:240-380
               
               
               Cow position:chr16:46433382-46433512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:240-391
               
               
               Cow position:chr16:45107839-45107687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-413
               
               
               Cow position:chr16:27262004-27262167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-427
               
               
               Cow position:chr16:31074344-31074160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:240-458
               
               
               Cow position:chr16:45813758-45813959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:240-463
               
               
               Cow position:chr16:56845946-56846170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:240-474
               
               
               Cow position:chr16:34168544-34168312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:240-497
               
               
               Cow position:chr16:42253618-42253876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 177

               
               
               Conread position:240-564
               
               
               Cow position:chr16:41037642-41037314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:240-570
               
               
               Cow position:chr16:24826019-24825688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 100

               
               
               Conread position:240-612
               
               
               Cow position:chr16:7082786-7083154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:240-623
               
               
               Cow position:chr16:32327598-32327228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 62

               
               
               Conread position:240-624
               
               
               Cow position:chr16:6692654-6693044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:240-624
               
               
               Cow position:chr16:18978667-18978286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 234

               
               
               Conread position:241-403
               
               
               Cow position:chr16:22860814-22860971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:241-623
               
               
               Cow position:chr16:8807144-8807522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:241-624
               
               
               Cow position:chr16:44138593-44138969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:242-354
               
               
               Cow position:chr16:10650945-10651057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr16:10592380-10592263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr16:52133567-52133687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr16:54083981-54083845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:242-386
               
               
               Cow position:chr16:53037678-53037819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):132, 103

               
               
               Conread position:242-389
               
               
               Cow position:chr16:18498925-18499073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr16:41697140-41697289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):63, 78

               
               
               Conread position:242-390
               
               
               Cow position:chr16:17626876-17626731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:242-392
               
               
               Cow position:chr16:46423375-46423525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr16:1410488-1410336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr16:4758021-4757869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr16:4928695-4928547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:242-400
               
               
               Cow position:chr16:10352816-10352658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr16:12060362-12060201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-404
               
               
               Cow position:chr16:3821485-3821322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:242-406
               
               
               Cow position:chr16:8323037-8323201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr16:13233003-13233161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr16:45676907-45677068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr16:54679614-54679451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:242-410
               
               
               Cow position:chr16:47643360-47643200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr16:32781311-32781137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:147
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr16:50289095-50288932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 103

               
               
               Conread position:242-422
               
               
               Cow position:chr16:48191056-48191233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 103

               
               
               Conread position:242-425
               
               
               Cow position:chr16:31117669-31117855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:242-426
               
               
               Cow position:chr16:25839564-25839382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr16:30037046-30037229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr16:35168672-35168486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-434
               
               
               Cow position:chr16:23810858-23810679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr16:31216056-31216251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:242-441
               
               
               Cow position:chr16:13969426-13969629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr16:14568539-14568734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr16:11008289-11008093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:242-443
               
               
               Cow position:chr16:37452670-37452868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:242-444
               
               
               Cow position:chr16:45047684-45047876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):196, 103

               
               
               Conread position:242-444
               
               
               Cow position:chr16:51069973-51070182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:242-445
               
               
               Cow position:chr16:17655199-17655395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:242-446
               
               
               Cow position:chr16:19408571-19408768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):187, 99

               
               
               Conread position:242-447
               
               
               Cow position:chr16:8933478-8933675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:242-447
               
               
               Cow position:chr16:26649684-26649889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 182

               
               
               Conread position:242-447
               
               
               Cow position:chr16:50873219-50873430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):118, 188

               
               
               Conread position:242-448
               
               
               Cow position:chr16:16056603-16056809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:242-448
               
               
               Cow position:chr16:46659115-46658908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr16:35623297-35623509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):172, 8

               
               
               Conread position:242-452
               
               
               Cow position:chr16:20633933-20634131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr16:48006547-48006751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr16:48145457-48145660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:242-455
               
               
               Cow position:chr16:43308616-43308825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 178

               
               
               Conread position:242-456
               
               
               Cow position:chr16:17745779-17745569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:242-458
               
               
               Cow position:chr16:48385455-48385668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr16:5363841-5363621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr16:47662659-47662445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:242-471
               
               
               Cow position:chr16:14106591-14106366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 118

               
               
               Conread position:242-479
               
               
               Cow position:chr16:29766283-29766056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:242-484
               
               
               Cow position:chr16:13689610-13689371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 91

               
               
               Conread position:242-485
               
               
               Cow position:chr16:23483239-23482994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:242-495
               
               
               Cow position:chr16:15808920-15808672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:242-502
               
               
               Cow position:chr16:37380214-37379959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:242-508
               
               
               Cow position:chr16:13611508-13611770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):220, 71

               
               
               Conread position:242-528
               
               
               Cow position:chr16:30715440-30715155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr16:34518597-34518310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-529
               
               
               Cow position:chr16:11775103-11775385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-529
               
               
               Cow position:chr16:25287742-25288045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 181

               
               
               Conread position:242-532
               
               
               Cow position:chr16:16548555-16548267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):216, 87

               
               
               Conread position:242-532
               
               
               Cow position:chr16:28192015-28191729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:242-535
               
               
               Cow position:chr16:14754377-14754676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 103

               
               
               Conread position:242-543
               
               
               Cow position:chr16:15416560-15416861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:242-557
               
               
               Cow position:chr16:44973441-44973123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-558
               
               
               Cow position:chr16:44744188-44744516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:242-563
               
               
               Cow position:chr16:4145010-4144688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 104

               
               
               Conread position:242-565
               
               
               Cow position:chr16:4103214-4103533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:242-570
               
               
               Cow position:chr16:8840840-8840513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:242-570
               
               
               Cow position:chr16:38708885-38709198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-591
               
               
               Cow position:chr16:31159626-31159970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 175

               
               
               Conread position:242-614
               
               
               Cow position:chr16:56231772-56231399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 0

               
               
               Conread position:242-618
               
               
               Cow position:chr16:7499006-7498643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-618
               
               
               Cow position:chr16:16424658-16425032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):346, 91

               
               
               Conread position:242-620
               
               
               Cow position:chr16:30143259-30143642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 186

               
               
               Conread position:242-620
               
               
               Cow position:chr16:40562176-40561797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr16:11218618-11218248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chr16:30209701-30209350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:242-621
               
               
               Cow position:chr16:32970133-32970500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 102

               
               
               Conread position:242-621
               
               
               Cow position:chr16:33226593-33226961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr16:35188200-35187819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:242-621
               
               
               Cow position:chr16:40333381-40333751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 58

               
               
               Conread position:242-623
               
               
               Cow position:chr16:820194-819830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr16:4910581-4910964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:242-623
               
               
               Cow position:chr16:9933104-9932732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-623
               
               
               Cow position:chr16:39474200-39474569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:242-623
               
               
               Cow position:chr16:42078895-42079270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr16:42092440-42092806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 12

               
               
               Conread position:242-623
               
               
               Cow position:chr16:49126243-49126615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr16:51500879-51500502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 102

               
               
               Conread position:242-623
               
               
               Cow position:chr16:53267669-53267287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:242-624
               
               
               Cow position:chr16:600897-600510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr16:5867325-5867708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr16:18936917-18937296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 232

               
               
               Conread position:242-624
               
               
               Cow position:chr16:26501102-26500731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr16:30311164-30311538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:242-624
               
               
               Cow position:chr16:33704752-33704373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 202

               
               
               Conread position:242-624
               
               
               Cow position:chr16:43275967-43275584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 103

               
               
               Conread position:242-624
               
               
               Cow position:chr16:52409633-52410015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr16:7075859-7075475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 79

               
               
               Conread position:242-625
               
               
               Cow position:chr16:9212508-9212126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 316

               
               
               Conread position:242-625
               
               
               Cow position:chr16:14611627-14611242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr16:23990537-23990924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 229

               
               
               Conread position:242-625
               
               
               Cow position:chr16:25936557-25936179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:242-625
               
               
               Cow position:chr16:28205638-28206021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:242-625
               
               
               Cow position:chr16:42161445-42161828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 311

               
               
               Conread position:242-625
               
               
               Cow position:chr16:44228729-44229113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr16:46385070-46385451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr16:48424940-48424572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr16:48932465-48932850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:243-349
               
               
               Cow position:chr16:23762069-23761963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-359
               
               
               Cow position:chr16:7418330-7418212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:243-369
               
               
               Cow position:chr16:5836522-5836404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:243-371
               
               
               Cow position:chr16:17945464-17945338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:243-463
               
               
               Cow position:chr16:20995895-20995674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-494
               
               
               Cow position:chr16:48494611-48494856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:243-508
               
               
               Cow position:chr16:12930983-12931249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-520
               
               
               Cow position:chr16:23729982-23730265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:243-570
               
               
               Cow position:chr16:33925739-33926060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 50

               
               
               Conread position:243-581
               
               
               Cow position:chr16:51578473-51578801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:243-584
               
               
               Cow position:chr16:24148102-24147765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:243-616
               
               
               Cow position:chr16:45139616-45139243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 138

               
               
               Conread position:243-621
               
               
               Cow position:chr16:11105497-11105125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 207

               
               
               Conread position:243-621
               
               
               Cow position:chr16:13989926-13989556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:243-623
               
               
               Cow position:chr16:4981438-4981801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 90

               
               
               Conread position:243-624
               
               
               Cow position:chr16:53509038-53509421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 176

               
               
               Conread position:243-625
               
               
               Cow position:chr16:16540877-16540495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 173

               
               
               Conread position:244-386
               
               
               Cow position:chr16:24855485-24855345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:244-390
               
               
               Cow position:chr16:18698953-18698806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-391
               
               
               Cow position:chr16:45554386-45554238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:244-403
               
               
               Cow position:chr16:8068877-8069030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-570
               
               
               Cow position:chr16:9973555-9973872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:244-623
               
               
               Cow position:chr16:4059298-4058934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 79

               
               
               Conread position:244-623
               
               
               Cow position:chr16:18679140-18678766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:244-624
               
               
               Cow position:chr16:7505031-7504674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr16:18650105-18650486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:244-625
               
               
               Cow position:chr16:44451426-44451041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 58

               
               
               Conread position:245-366
               
               
               Cow position:chr16:7442157-7442281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-379
               
               
               Cow position:chr16:22808610-22808739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-407
               
               
               Cow position:chr16:24616727-24616565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-421
               
               
               Cow position:chr16:26342217-26342047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:245-440
               
               
               Cow position:chr16:47620323-47620131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-442
               
               
               Cow position:chr16:48493121-48492935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr16:25484307-25484101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr16:24403682-24403462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-474
               
               
               Cow position:chr16:3614688-3614465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-481
               
               
               Cow position:chr16:28267070-28267300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:245-515
               
               
               Cow position:chr16:589974-590227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-536
               
               
               Cow position:chr16:9790688-9790970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:245-565
               
               
               Cow position:chr16:32132468-32132160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-570
               
               
               Cow position:chr16:23738122-23737806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:245-593
               
               
               Cow position:chr16:7665579-7665225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 180

               
               
               Conread position:245-611
               
               
               Cow position:chr16:52855081-52855442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:245-623
               
               
               Cow position:chr16:5415815-5416190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:245-623
               
               
               Cow position:chr16:42242173-42242561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:245-623
               
               
               Cow position:chr16:51598663-51599034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr16:14028685-14029056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 13

               
               
               Conread position:245-624
               
               
               Cow position:chr16:18205903-18205528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 84

               
               
               Conread position:246-508
               
               
               Cow position:chr16:55782524-55782776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:246-621
               
               
               Cow position:chr16:31978244-31978618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:247-356
               
               
               Cow position:chr16:38191413-38191303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-359
               
               
               Cow position:chr16:4902527-4902417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-401
               
               
               Cow position:chr16:8065944-8066091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:247-412
               
               
               Cow position:chr16:30706051-30705886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:247-430
               
               
               Cow position:chr16:4134813-4134627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-430
               
               
               Cow position:chr16:47336672-47336491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:247-430
               
               
               Cow position:chr16:53048494-53048312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:247-438
               
               
               Cow position:chr16:50282485-50282678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:247-446
               
               
               Cow position:chr16:13752184-13752378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):157, 110

               
               
               Conread position:247-448
               
               
               Cow position:chr16:7429318-7429121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:247-456
               
               
               Cow position:chr16:37117014-37116809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:247-459
               
               
               Cow position:chr16:53891841-53892048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:247-479
               
               
               Cow position:chr16:8279847-8280079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:247-503
               
               
               Cow position:chr16:7077804-7078050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:247-597
               
               
               Cow position:chr16:49229832-49230176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 53

               
               
               Conread position:247-601
               
               
               Cow position:chr16:9497335-9497679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:247-610
               
               
               Cow position:chr16:4503223-4502860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:247-620
               
               
               Cow position:chr16:53813713-53814085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:247-621
               
               
               Cow position:chr16:16096677-16096310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:247-624
               
               
               Cow position:chr16:31558834-31558461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 90

               
               
               Conread position:247-625
               
               
               Cow position:chr16:16265159-16265532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:248-410
               
               
               Cow position:chr16:56787836-56787996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:248-452
               
               
               Cow position:chr16:30515651-30515841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 67

               
               
               Conread position:248-621
               
               
               Cow position:chr16:41752633-41753011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 106

               
               
               Conread position:249-446
               
               
               Cow position:chr16:11615294-11615483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:249-535
               
               
               Cow position:chr16:21450785-21450510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:252-378
               
               
               Cow position:chr16:17288876-17288754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:252-404
               
               
               Cow position:chr16:42444091-42443940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:252-438
               
               
               Cow position:chr16:11806611-11806435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:252-459
               
               
               Cow position:chr16:14758669-14758471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:252-624
               
               
               Cow position:chr16:9787502-9787147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:254-543
               
               
               Cow position:chr16:39514142-39514436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 127

               
               
               Conread position:258-393
               
               
               Cow position:chr16:53830656-53830791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-416
               
               
               Cow position:chr16:49336158-49336002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:258-429
               
               
               Cow position:chr16:33235202-33235373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:144
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-442
               
               
               Cow position:chr16:42633821-42633999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:258-569
               
               
               Cow position:chr16:23823085-23823389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:259-556
               
               
               Cow position:chr16:52789986-52789701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:260-449
               
               
               Cow position:chr16:35195675-35195868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:260-618
               
               
               Cow position:chr16:8448718-8449085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:260-618
               
               
               Cow position:chr16:39394504-39394160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:260-624
               
               
               Cow position:chr16:4972093-4972458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-625
               
               
               Cow position:chr16:15363672-15363320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:264-465
               
               
               Cow position:chr16:8315261-8315447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:265-546
               
               
               Cow position:chr16:35758134-35757862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:268-392
               
               
               Cow position:chr16:49404232-49404356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-458
               
               
               Cow position:chr16:44303-44117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:272-430
               
               
               Cow position:chr16:8325527-8325689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:215-459
               
               
               Cow position:chr17:9746532-9746294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:215-518
               
               
               Cow position:chr17:18720431-18720730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:216-394
               
               
               Cow position:chr17:27058538-27058715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:216-452
               
               
               Cow position:chr17:11832103-11832356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 225

               
               
               Conread position:216-623
               
               
               Cow position:chr17:11101783-11102180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:216-624
               
               
               Cow position:chr17:14003837-14003438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:218-504
               
               
               Cow position:chr17:20126628-20126349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:221-449
               
               
               Cow position:chr17:33926114-33926338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:223-433
               
               
               Cow position:chr17:10458927-10459137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:223-455
               
               
               Cow position:chr17:41290012-41290240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:223-622
               
               
               Cow position:chr17:12059084-12059482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:224-414
               
               
               Cow position:chr17:3577545-3577356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:224-558
               
               
               Cow position:chr17:10473841-10473510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:225-623
               
               
               Cow position:chr17:17222348-17221954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 134

               
               
               Conread position:225-623
               
               
               Cow position:chr17:26230959-26230548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 211

               
               
               Conread position:226-394
               
               
               Cow position:chr17:7142870-7142702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:226-497
               
               
               Cow position:chr17:42347219-42347486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:226-609
               
               
               Cow position:chr17:24077411-24077028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:226-622
               
               
               Cow position:chr17:24550184-24549779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:226-625
               
               
               Cow position:chr17:2034537-2034152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:227-338
               
               
               Cow position:chr17:7136983-7136872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:227-353
               
               
               Cow position:chr17:39857395-39857268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr17:40792226-40792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:227-520
               
               
               Cow position:chr17:31122593-31122886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:228-618
               
               
               Cow position:chr17:29715196-29715572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:229-621
               
               
               Cow position:chr17:32989480-32989104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:229-621
               
               
               Cow position:chr17:32993620-32994002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:233-614
               
               
               Cow position:chr17:17060684-17061052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:237-421
               
               
               Cow position:chr17:24773670-24773494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:239-427
               
               
               Cow position:chr17:26000106-25999921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:239-449
               
               
               Cow position:chr17:33052849-33052646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:239-560
               
               
               Cow position:chr17:27795636-27795320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:240-348
               
               
               Cow position:chr17:33658082-33658190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-426
               
               
               Cow position:chr17:26515745-26515930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:240-446
               
               
               Cow position:chr17:32471796-32472005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:240-448
               
               
               Cow position:chr17:7437159-7436950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 150

               
               
               Conread position:240-453
               
               
               Cow position:chr17:38200772-38200987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-463
               
               
               Cow position:chr17:4824484-4824268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):209, 110

               
               
               Conread position:240-483
               
               
               Cow position:chr17:21003840-21004082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:240-510
               
               
               Cow position:chr17:14051109-14051380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-536
               
               
               Cow position:chr17:17121661-17121372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:240-541
               
               
               Cow position:chr17:30718430-30718725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:240-621
               
               
               Cow position:chr17:36330970-36331351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:240-624
               
               
               Cow position:chr17:22775364-22774998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 63

               
               
               Conread position:240-625
               
               
               Cow position:chr17:33271694-33272055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:241-625
               
               
               Cow position:chr17:35388027-35388413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:242-339
               
               
               Cow position:chr17:1040732-1040635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr17:23563804-23563904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr17:4968099-4967956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr17:14724293-14724443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr17:24032007-24031855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr17:25916883-25916731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr17:27262717-27262565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-398
               
               
               Cow position:chr17:10510672-10510828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr17:24821850-24821695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr17:32273700-32273857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-409
               
               
               Cow position:chr17:12591153-12590986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:140
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr17:908729-908562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr17:8836963-8837134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr17:21207147-21207330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr17:21628466-21628277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:242-437
               
               
               Cow position:chr17:34207832-34208025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:242-439
               
               
               Cow position:chr17:1035611-1035811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:242-441
               
               
               Cow position:chr17:38647044-38646859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr17:27765256-27765071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr17:1275511-1275307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr17:20835583-20835375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr17:20870114-20870311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr17:38994377-38994167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr17:25128362-25128568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr17:33487723-33487513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr17:9778234-9778031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:242-459
               
               
               Cow position:chr17:15684499-15684278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:242-459
               
               
               Cow position:chr17:27274550-27274335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:242-459
               
               
               Cow position:chr17:35126694-35126487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr17:21017783-21017566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr17:21755443-21755667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:242-463
               
               
               Cow position:chr17:33999062-33999275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr17:1526368-1526592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:242-473
               
               
               Cow position:chr17:11664602-11664829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:242-478
               
               
               Cow position:chr17:552972-553210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:242-479
               
               
               Cow position:chr17:18495534-18495754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):194, 88

               
               
               Conread position:242-480
               
               
               Cow position:chr17:21031769-21031540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:242-498
               
               
               Cow position:chr17:31481049-31481305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 187

               
               
               Conread position:242-506
               
               
               Cow position:chr17:18109099-18109360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 115

               
               
               Conread position:242-516
               
               
               Cow position:chr17:22032704-22032967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr17:12216086-12216367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 219

               
               
               Conread position:242-528
               
               
               Cow position:chr17:38614945-38614664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:242-536
               
               
               Cow position:chr17:40331754-40331465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:242-542
               
               
               Cow position:chr17:3306853-3306559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-543
               
               
               Cow position:chr17:9117633-9117337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 0

               
               
               Conread position:242-550
               
               
               Cow position:chr17:24973938-24973634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 91

               
               
               Conread position:242-551
               
               
               Cow position:chr17:16398806-16399115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-565
               
               
               Cow position:chr17:36499591-36499911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:242-566
               
               
               Cow position:chr17:242624-242303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:242-567
               
               
               Cow position:chr17:1061073-1061395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 139

               
               
               Conread position:242-570
               
               
               Cow position:chr17:19455325-19455632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-575
               
               
               Cow position:chr17:16895318-16895638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):321, 41

               
               
               Conread position:242-583
               
               
               Cow position:chr17:24580310-24580633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 181

               
               
               Conread position:242-596
               
               
               Cow position:chr17:25189274-25188919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:242-607
               
               
               Cow position:chr17:22564168-22563814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:242-607
               
               
               Cow position:chr17:23101222-23101582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:242-612
               
               
               Cow position:chr17:13922465-13922099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 213

               
               
               Conread position:242-615
               
               
               Cow position:chr17:6858401-6858775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-615
               
               
               Cow position:chr17:9697712-9698096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 154

               
               
               Conread position:242-619
               
               
               Cow position:chr17:21495363-21494990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:242-620
               
               
               Cow position:chr17:11215905-11216267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr17:21335708-21336086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr17:27667202-27667582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 346

               
               
               Conread position:242-623
               
               
               Cow position:chr17:1410253-1410635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 181

               
               
               Conread position:242-623
               
               
               Cow position:chr17:5000592-5000968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr17:8690455-8690849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:242-623
               
               
               Cow position:chr17:14025926-14026292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:242-623
               
               
               Cow position:chr17:26765004-26764622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 179

               
               
               Conread position:242-624
               
               
               Cow position:chr17:979169-979526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr17:3471407-3471039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr17:6566452-6566087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:242-624
               
               
               Cow position:chr17:13143704-13144074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr17:32651606-32651225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:242-624
               
               
               Cow position:chr17:34595927-34595546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 42

               
               
               Conread position:242-624
               
               
               Cow position:chr17:42398422-42398044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:242-625
               
               
               Cow position:chr17:31484-31100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:2266230-2265846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr17:6123825-6123441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:14033654-14034040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:242-625
               
               
               Cow position:chr17:17494332-17493948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:18776804-18777178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr17:18860736-18861111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:242-625
               
               
               Cow position:chr17:20780497-20780126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:20987609-20987993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:27790753-27791137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:29823926-29824302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 217

               
               
               Conread position:242-625
               
               
               Cow position:chr17:30665258-30664882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:242-625
               
               
               Cow position:chr17:33058568-33058951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:34005250-34005630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 146

               
               
               Conread position:242-625
               
               
               Cow position:chr17:34235208-34235592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr17:35438085-35437701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:243-386
               
               
               Cow position:chr17:31037395-31037534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:243-445
               
               
               Cow position:chr17:4225510-4225704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:243-450
               
               
               Cow position:chr17:30713335-30713135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:243-452
               
               
               Cow position:chr17:24587607-24587398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr17:6423746-6423534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:243-498
               
               
               Cow position:chr17:16291860-16292117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-618
               
               
               Cow position:chr17:15333727-15334107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 82

               
               
               Conread position:243-623
               
               
               Cow position:chr17:20022531-20022901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:243-623
               
               
               Cow position:chr17:33933763-33934137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 79

               
               
               Conread position:243-624
               
               
               Cow position:chr17:38833028-38832662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr17:14211979-14212363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:244-458
               
               
               Cow position:chr17:11172632-11172842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:244-498
               
               
               Cow position:chr17:3503565-3503312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:244-621
               
               
               Cow position:chr17:9914597-9914219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-624
               
               
               Cow position:chr17:3498679-3499062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:245-352
               
               
               Cow position:chr17:6848789-6848681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:245-358
               
               
               Cow position:chr17:14060791-14060906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-381
               
               
               Cow position:chr17:26233844-26233979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:245-391
               
               
               Cow position:chr17:38613230-38613087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:245-394
               
               
               Cow position:chr17:1562788-1562936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:245-407
               
               
               Cow position:chr17:24149167-24149002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-425
               
               
               Cow position:chr17:37480009-37480186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:245-427
               
               
               Cow position:chr17:32950257-32950077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:245-444
               
               
               Cow position:chr17:21710489-21710293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-449
               
               
               Cow position:chr17:3182601-3182801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:245-452
               
               
               Cow position:chr17:32554041-32554243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:245-456
               
               
               Cow position:chr17:25141430-25141242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:245-508
               
               
               Cow position:chr17:8544291-8544032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:245-511
               
               
               Cow position:chr17:8079300-8079038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:245-529
               
               
               Cow position:chr17:5688374-5688644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:245-532
               
               
               Cow position:chr17:5224384-5224103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:245-544
               
               
               Cow position:chr17:1295586-1295884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:245-564
               
               
               Cow position:chr17:26183206-26182890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:245-565
               
               
               Cow position:chr17:24883584-24883896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 57

               
               
               Conread position:245-582
               
               
               Cow position:chr17:41393730-41394059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:245-608
               
               
               Cow position:chr17:21959703-21960054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-619
               
               
               Cow position:chr17:41399988-41400356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:245-620
               
               
               Cow position:chr17:15299891-15300252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:245-621
               
               
               Cow position:chr17:40771820-40771436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 305

               
               
               Conread position:245-623
               
               
               Cow position:chr17:20234212-20233836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:245-623
               
               
               Cow position:chr17:23337033-23337405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 63

               
               
               Conread position:245-623
               
               
               Cow position:chr17:27306142-27305774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:245-623
               
               
               Cow position:chr17:28540013-28539649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-624
               
               
               Cow position:chr17:11056387-11056768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:245-624
               
               
               Cow position:chr17:20993056-20993434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:246-366
               
               
               Cow position:chr17:32280649-32280531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:246-408
               
               
               Cow position:chr17:36268374-36268220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:246-441
               
               
               Cow position:chr17:32278923-32279116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:246-450
               
               
               Cow position:chr17:29040483-29040684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:246-458
               
               
               Cow position:chr17:30999753-30999550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:246-543
               
               
               Cow position:chr17:40421652-40421358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:246-583
               
               
               Cow position:chr17:43717332-43717660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 95

               
               
               Conread position:247-379
               
               
               Cow position:chr17:6329095-6328961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-384
               
               
               Cow position:chr17:31701424-31701285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:247-398
               
               
               Cow position:chr17:21917892-21918040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-409
               
               
               Cow position:chr17:1522552-1522715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-430
               
               
               Cow position:chr17:24490509-24490323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-452
               
               
               Cow position:chr17:12219955-12220158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:247-468
               
               
               Cow position:chr17:4721472-4721251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:247-510
               
               
               Cow position:chr17:37163539-37163807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:247-536
               
               
               Cow position:chr17:17406120-17405818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:247-624
               
               
               Cow position:chr17:11381736-11382107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:247-624
               
               
               Cow position:chr17:11618567-11618189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:247-625
               
               
               Cow position:chr17:32027474-32027852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 353

               
               
               Conread position:249-459
               
               
               Cow position:chr17:5423091-5423298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:250-390
               
               
               Cow position:chr17:14762141-14762277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:250-438
               
               
               Cow position:chr17:6624237-6624052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:250-449
               
               
               Cow position:chr17:11156511-11156710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-456
               
               
               Cow position:chr17:23246190-23245987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):199, 80

               
               
               Conread position:250-625
               
               
               Cow position:chr17:9175710-9176076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 63

               
               
               Conread position:251-404
               
               
               Cow position:chr17:1634514-1634654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:251-493
               
               
               Cow position:chr17:21114973-21115206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:252-624
               
               
               Cow position:chr17:41029931-41029554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:252-625
               
               
               Cow position:chr17:20848499-20848143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:254-430
               
               
               Cow position:chr17:7648187-7648022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:255-623
               
               
               Cow position:chr17:45881876-45881515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:255-625
               
               
               Cow position:chr17:20093160-20093516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 42

               
               
               Conread position:256-624
               
               
               Cow position:chr17:3387260-3386905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:258-623
               
               
               Cow position:chr17:16117452-16117822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 224

               
               
               Conread position:258-624
               
               
               Cow position:chr17:20083543-20083904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:259-547
               
               
               Cow position:chr17:34079132-34079413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:260-619
               
               
               Cow position:chr17:5767883-5767514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:263-625
               
               
               Cow position:chr17:21039244-21038888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:264-456
               
               
               Cow position:chr17:1358836-1359021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:264-457
               
               
               Cow position:chr17:37482108-37482313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:264-497
               
               
               Cow position:chr17:26818485-26818717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:264-621
               
               
               Cow position:chr17:32366252-32365897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:264-624
               
               
               Cow position:chr17:43527942-43527589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:269-460
               
               
               Cow position:chr17:36533616-36533433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:270-391
               
               
               Cow position:chr17:28468094-28467977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:215-398
               
               
               Cow position:chr18:28823023-28823208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:216-623
               
               
               Cow position:chr18:16044209-16044613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 133

               
               
               Conread position:217-459
               
               
               Cow position:chr18:55789050-55789292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:217-543
               
               
               Cow position:chr18:29371811-29371483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:218-622
               
               
               Cow position:chr18:7947324-7946916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:219-459
               
               
               Cow position:chr18:46048701-46048459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:222-612
               
               
               Cow position:chr18:238407-238814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:222-621
               
               
               Cow position:chr18:52632471-52632883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:223-619
               
               
               Cow position:chr18:24342554-24342164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:223-624
               
               
               Cow position:chr18:33793640-33793233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:223-624
               
               
               Cow position:chr18:42966801-42966373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:224-625
               
               
               Cow position:chr18:22275099-22275508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:226-384
               
               
               Cow position:chr18:51392707-51392871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:226-451
               
               
               Cow position:chr18:267883-268103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:226-451
               
               
               Cow position:chr18:47517282-47517500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:226-457
               
               
               Cow position:chr18:55499002-55498769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:226-459
               
               
               Cow position:chr18:48290508-48290739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:226-622
               
               
               Cow position:chr18:5189754-5190142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:226-623
               
               
               Cow position:chr18:33606565-33606167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:226-624
               
               
               Cow position:chr18:7951046-7950643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:226-625
               
               
               Cow position:chr18:11867271-11866883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:226-625
               
               
               Cow position:chr18:24022310-24021925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:226-625
               
               
               Cow position:chr18:45573042-45572633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:227-443
               
               
               Cow position:chr18:48453622-48453410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:227-558
               
               
               Cow position:chr18:33516775-33516447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:227-623
               
               
               Cow position:chr18:3180348-3179956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 116

               
               
               Conread position:227-624
               
               
               Cow position:chr18:43564162-43563758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:228-440
               
               
               Cow position:chr18:11691479-11691691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:228-455
               
               
               Cow position:chr18:9557911-9557685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 195

               
               
               Conread position:228-622
               
               
               Cow position:chr18:20126235-20125845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 198

               
               
               Conread position:228-625
               
               
               Cow position:chr18:12117914-12118310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:234-546
               
               
               Cow position:chr18:49665238-49665544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 19

               
               
               Conread position:234-623
               
               
               Cow position:chr18:49161523-49161920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:240-360
               
               
               Cow position:chr18:48451973-48451847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:240-437
               
               
               Cow position:chr18:52864395-52864594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-447
               
               
               Cow position:chr18:25282638-25282843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):142, 105

               
               
               Conread position:240-567
               
               
               Cow position:chr18:28794155-28794473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:241-624
               
               
               Cow position:chr18:3417081-3416710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:241-625
               
               
               Cow position:chr18:22065439-22065833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:242-335
               
               
               Cow position:chr18:21740897-21740990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr18:18369450-18369566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-362
               
               
               Cow position:chr18:42432181-42432300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:242-365
               
               
               Cow position:chr18:1399439-1399562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-369
               
               
               Cow position:chr18:3211785-3211658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:242-372
               
               
               Cow position:chr18:1954678-1954807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:242-372
               
               
               Cow position:chr18:54056472-54056345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr18:15340533-15340674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:242-393
               
               
               Cow position:chr18:47722534-47722382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr18:14085371-14085224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-402
               
               
               Cow position:chr18:33007973-33007813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr18:48713462-48713306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr18:21205275-21205118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr18:32883219-32883053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr18:12023722-12023890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr18:49437976-49437790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-442
               
               
               Cow position:chr18:23687136-23687337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr18:16462076-16462278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-448
               
               
               Cow position:chr18:28923925-28924121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):181, 12

               
               
               Conread position:242-450
               
               
               Cow position:chr18:16642904-16642695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr18:20271107-20271312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr18:11680637-11680427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr18:25647339-25647542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-454
               
               
               Cow position:chr18:6609945-6610153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:242-456
               
               
               Cow position:chr18:5578219-5578007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr18:13359977-13359764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:242-458
               
               
               Cow position:chr18:11166893-11166680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:242-458
               
               
               Cow position:chr18:39875346-39875557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):184, 94

               
               
               Conread position:242-459
               
               
               Cow position:chr18:25206277-25206492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-468
               
               
               Cow position:chr18:26586744-26586974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-473
               
               
               Cow position:chr18:54572379-54572612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:242-477
               
               
               Cow position:chr18:3132843-3133060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:242-480
               
               
               Cow position:chr18:44549002-44549225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-499
               
               
               Cow position:chr18:47709762-47709500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-500
               
               
               Cow position:chr18:8105032-8105284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:242-501
               
               
               Cow position:chr18:49100457-49100711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 103

               
               
               Conread position:242-507
               
               
               Cow position:chr18:47745970-47745704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr18:2774688-2774936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:242-515
               
               
               Cow position:chr18:18592388-18592099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 59

               
               
               Conread position:242-529
               
               
               Cow position:chr18:10576015-10575742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-529
               
               
               Cow position:chr18:45104532-45104817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:242-536
               
               
               Cow position:chr18:56046091-56045796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-545
               
               
               Cow position:chr18:55397218-55396931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:242-546
               
               
               Cow position:chr18:29796512-29796820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):143, 103

               
               
               Conread position:242-547
               
               
               Cow position:chr18:18340056-18340341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:242-555
               
               
               Cow position:chr18:20174216-20174526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:242-558
               
               
               Cow position:chr18:55505320-55505005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 137

               
               
               Conread position:242-564
               
               
               Cow position:chr18:36631993-36632314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-579
               
               
               Cow position:chr18:3209626-3209303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:242-582
               
               
               Cow position:chr18:34527186-34527530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 95

               
               
               Conread position:242-590
               
               
               Cow position:chr18:23766500-23766851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 146

               
               
               Conread position:242-603
               
               
               Cow position:chr18:47511917-47511555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:242-618
               
               
               Cow position:chr18:23765087-23765461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:242-618
               
               
               Cow position:chr18:44236118-44235739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-618
               
               
               Cow position:chr18:55787841-55787472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 101

               
               
               Conread position:242-619
               
               
               Cow position:chr18:28657996-28658368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 223

               
               
               Conread position:242-619
               
               
               Cow position:chr18:35076298-35075931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 101

               
               
               Conread position:242-620
               
               
               Cow position:chr18:11183858-11183478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 181

               
               
               Conread position:242-620
               
               
               Cow position:chr18:29356714-29357098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr18:9974411-9974787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr18:33299814-33299447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:242-621
               
               
               Cow position:chr18:33407528-33407176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 182

               
               
               Conread position:242-621
               
               
               Cow position:chr18:35058252-35057885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:242-621
               
               
               Cow position:chr18:36458846-36458466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:242-621
               
               
               Cow position:chr18:37002546-37002173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr18:37733956-37733576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr18:50082339-50082694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:242-623
               
               
               Cow position:chr18:4182277-4182664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 8

               
               
               Conread position:242-623
               
               
               Cow position:chr18:13293424-13293045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:242-623
               
               
               Cow position:chr18:28101544-28101162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr18:45903983-45904361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 22

               
               
               Conread position:242-624
               
               
               Cow position:chr18:7956056-7955682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 55

               
               
               Conread position:242-624
               
               
               Cow position:chr18:18919044-18919403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:242-625
               
               
               Cow position:chr18:215117-215501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr18:4432990-4432607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:242-625
               
               
               Cow position:chr18:4539966-4540338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr18:6290700-6290313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 149

               
               
               Conread position:242-625
               
               
               Cow position:chr18:7649910-7649526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 128

               
               
               Conread position:242-625
               
               
               Cow position:chr18:11309333-11308946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr18:19356787-19356404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 161

               
               
               Conread position:242-625
               
               
               Cow position:chr18:22181190-22181572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr18:27103237-27102856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:242-625
               
               
               Cow position:chr18:30843616-30844026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 177

               
               
               Conread position:242-625
               
               
               Cow position:chr18:33756789-33756425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 58

               
               
               Conread position:242-625
               
               
               Cow position:chr18:41238786-41238406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:242-625
               
               
               Cow position:chr18:42608410-42608795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:242-625
               
               
               Cow position:chr18:43473841-43473467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:242-625
               
               
               Cow position:chr18:52628993-52629377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-343
               
               
               Cow position:chr18:16686425-16686525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-354
               
               
               Cow position:chr18:35419722-35419611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-362
               
               
               Cow position:chr18:15809998-15810113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:243-419
               
               
               Cow position:chr18:42479676-42479850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):159, 166

               
               
               Conread position:243-449
               
               
               Cow position:chr18:38985603-38985397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-531
               
               
               Cow position:chr18:48407703-48407417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 21

               
               
               Conread position:243-612
               
               
               Cow position:chr18:24599626-24599995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 231

               
               
               Conread position:243-623
               
               
               Cow position:chr18:20641577-20641942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:243-623
               
               
               Cow position:chr18:29388131-29387773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr18:40140974-40141355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 226

               
               
               Conread position:243-625
               
               
               Cow position:chr18:51346552-51346169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-345
               
               
               Cow position:chr18:4602102-4602200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-393
               
               
               Cow position:chr18:5010262-5010112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr18:44262537-44262153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:244-624
               
               
               Cow position:chr18:29058583-29058946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr18:11270741-11271124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr18:55782507-55782892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:245-362
               
               
               Cow position:chr18:3193614-3193496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr18:48828871-48829021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-394
               
               
               Cow position:chr18:25984660-25984808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:245-410
               
               
               Cow position:chr18:4495976-4496139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-422
               
               
               Cow position:chr18:35582191-35582365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:245-426
               
               
               Cow position:chr18:21768541-21768360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:245-449
               
               
               Cow position:chr18:16847602-16847408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:245-449
               
               
               Cow position:chr18:31586458-31586654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:245-459
               
               
               Cow position:chr18:23424829-23424628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):188, 36

               
               
               Conread position:245-459
               
               
               Cow position:chr18:50700581-50700365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:245-479
               
               
               Cow position:chr18:35827500-35827738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:245-501
               
               
               Cow position:chr18:52382609-52382354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:245-514
               
               
               Cow position:chr18:56159371-56159104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-520
               
               
               Cow position:chr18:4666302-4666569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:245-536
               
               
               Cow position:chr18:15880948-15881231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:245-567
               
               
               Cow position:chr18:36445349-36445022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 74

               
               
               Conread position:245-570
               
               
               Cow position:chr18:5647158-5646832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:245-621
               
               
               Cow position:chr18:37023643-37024018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr18:47314379-47314760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-489
               
               
               Cow position:chr18:11233342-11233101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:246-619
               
               
               Cow position:chr18:55552881-55552505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:247-403
               
               
               Cow position:chr18:35908532-35908379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-454
               
               
               Cow position:chr18:39115231-39115439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:247-455
               
               
               Cow position:chr18:42455119-42455316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:247-536
               
               
               Cow position:chr18:9818746-9818463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-560
               
               
               Cow position:chr18:23447173-23447479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:247-584
               
               
               Cow position:chr18:9010629-9010308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-591
               
               
               Cow position:chr18:13507831-13508158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-619
               
               
               Cow position:chr18:20864898-20864526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 207

               
               
               Conread position:247-624
               
               
               Cow position:chr18:35636440-35636812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:248-616
               
               
               Cow position:chr18:21528314-21527952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:249-625
               
               
               Cow position:chr18:9089605-9089240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:250-616
               
               
               Cow position:chr18:6103195-6103559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:250-623
               
               
               Cow position:chr18:35012403-35012769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:251-393
               
               
               Cow position:chr18:43020488-43020624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:251-598
               
               
               Cow position:chr18:11618382-11618043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 113

               
               
               Conread position:252-398
               
               
               Cow position:chr18:895932-895788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:252-435
               
               
               Cow position:chr18:7952553-7952368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:252-540
               
               
               Cow position:chr18:11832031-11831762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:253-625
               
               
               Cow position:chr18:51406008-51406357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:254-406
               
               
               Cow position:chr18:2354801-2354647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:254-556
               
               
               Cow position:chr18:4624528-4624826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:254-624
               
               
               Cow position:chr18:13172615-13172991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:255-623
               
               
               Cow position:chr18:21721377-21721744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:257-625
               
               
               Cow position:chr18:50637561-50637928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 192

               
               
               Conread position:258-450
               
               
               Cow position:chr18:46452978-46453170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:258-622
               
               
               Cow position:chr18:22120984-22121343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:258-623
               
               
               Cow position:chr18:30794331-30793996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:259-402
               
               
               Cow position:chr18:3018180-3018322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:259-551
               
               
               Cow position:chr18:39662675-39662386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:259-623
               
               
               Cow position:chr18:17005153-17004790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 217

               
               
               Conread position:263-448
               
               
               Cow position:chr18:56163479-56163298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:264-482
               
               
               Cow position:chr18:1733302-1733514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:264-504
               
               
               Cow position:chr18:4748984-4749226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 189

               
               
               Conread position:264-623
               
               
               Cow position:chr18:81648-81299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:265-368
               
               
               Cow position:chr18:36184009-36184114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:266-518
               
               
               Cow position:chr18:11811865-11811619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 74

               
               
               Conread position:266-582
               
               
               Cow position:chr18:30248242-30248551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 50

               
               
               Conread position:266-614
               
               
               Cow position:chr18:7487147-7486797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:268-452
               
               
               Cow position:chr18:3422607-3422427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:178-447
               
               
               Cow position:chr19:10093300-10093028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:215-454
               
               
               Cow position:chr19:15767166-15766941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:216-624
               
               
               Cow position:chr19:12698284-12697883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:216-625
               
               
               Cow position:chr19:38392767-38392354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 296

               
               
               Conread position:218-404
               
               
               Cow position:chr19:8864712-8864525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:223-612
               
               
               Cow position:chr19:48409469-48409079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:223-625
               
               
               Cow position:chr19:2138146-2138536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:224-456
               
               
               Cow position:chr19:25652797-25653033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 208

               
               
               Conread position:224-482
               
               
               Cow position:chr19:6966434-6966697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:224-484
               
               
               Cow position:chr19:48475093-48474840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):199, 23

               
               
               Conread position:224-606
               
               
               Cow position:chr19:36125542-36125162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 201

               
               
               Conread position:224-621
               
               
               Cow position:chr19:42726315-42725913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-625
               
               
               Cow position:chr19:14253591-14253190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 274

               
               
               Conread position:226-390
               
               
               Cow position:chr19:25673565-25673729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:226-407
               
               
               Cow position:chr19:36245535-36245713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:226-508
               
               
               Cow position:chr19:32955843-32955562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:226-520
               
               
               Cow position:chr19:43058492-43058192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:226-579
               
               
               Cow position:chr19:42205888-42205532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:226-581
               
               
               Cow position:chr19:35380596-35380946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:226-621
               
               
               Cow position:chr19:46180861-46181248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:227-445
               
               
               Cow position:chr19:33468973-33468759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:227-448
               
               
               Cow position:chr19:990467-990677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:227-452
               
               
               Cow position:chr19:2735015-2735250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:227-453
               
               
               Cow position:chr19:29625858-29625632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:227-612
               
               
               Cow position:chr19:4503173-4502765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:229-621
               
               
               Cow position:chr19:39057193-39056804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:232-456
               
               
               Cow position:chr19:36059880-36059656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:238-625
               
               
               Cow position:chr19:19499614-19499997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:239-433
               
               
               Cow position:chr19:31762966-31762775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):68, 178

               
               
               Conread position:240-390
               
               
               Cow position:chr19:51285570-51285416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:240-468
               
               
               Cow position:chr19:17479029-17479248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-485
               
               
               Cow position:chr19:10964657-10964903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 199

               
               
               Conread position:240-607
               
               
               Cow position:chr19:22765557-22765191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 0

               
               
               Conread position:241-383
               
               
               Cow position:chr19:25655298-25655441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr19:22043416-22043558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr19:42903943-42903804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-459
               
               
               Cow position:chr19:8332230-8332016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:241-509
               
               
               Cow position:chr19:29754971-29755236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:241-623
               
               
               Cow position:chr19:7612556-7612187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-339
               
               
               Cow position:chr19:25807368-25807465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-370
               
               
               Cow position:chr19:4722102-4722230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:242-375
               
               
               Cow position:chr19:24759950-24760079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-377
               
               
               Cow position:chr19:2690262-2690395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:242-384
               
               
               Cow position:chr19:6092704-6092561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr19:8270666-8270822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr19:24137196-24137043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-401
               
               
               Cow position:chr19:7158787-7158954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr19:33903488-33903645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr19:52136758-52136921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr19:11565218-11565377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr19:20984839-20984996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:242-419
               
               
               Cow position:chr19:11758669-11758840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr19:10706221-10706031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr19:51334610-51334410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:242-440
               
               
               Cow position:chr19:21378537-21378726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:242-444
               
               
               Cow position:chr19:41946120-41945926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr19:8683251-8683046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:242-449
               
               
               Cow position:chr19:10545772-10545977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr19:10213604-10213401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr19:11376470-11376677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:242-452
               
               
               Cow position:chr19:33823252-33823045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:242-453
               
               
               Cow position:chr19:29368333-29368126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr19:9387570-9387359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:242-456
               
               
               Cow position:chr19:40832190-40831973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr19:4537482-4537689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:242-459
               
               
               Cow position:chr19:7668633-7668419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):175, 60

               
               
               Conread position:242-459
               
               
               Cow position:chr19:14347947-14347731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:242-459
               
               
               Cow position:chr19:20935688-20935476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):207, 91

               
               
               Conread position:242-459
               
               
               Cow position:chr19:36380178-36379969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):212, 29

               
               
               Conread position:242-460
               
               
               Cow position:chr19:19919527-19919737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-468
               
               
               Cow position:chr19:53037218-53037441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:242-479
               
               
               Cow position:chr19:4252037-4252271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-480
               
               
               Cow position:chr19:55899303-55899539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-485
               
               
               Cow position:chr19:40051457-40051690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-486
               
               
               Cow position:chr19:9541959-9542203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-486
               
               
               Cow position:chr19:35742095-35741851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 60

               
               
               Conread position:242-487
               
               
               Cow position:chr19:16694108-16694352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:242-489
               
               
               Cow position:chr19:12327445-12327704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:242-491
               
               
               Cow position:chr19:18843032-18843272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:242-492
               
               
               Cow position:chr19:13129807-13129582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-493
               
               
               Cow position:chr19:6417529-6417287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-500
               
               
               Cow position:chr19:26087130-26086873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:242-503
               
               
               Cow position:chr19:33912692-33912955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 250

               
               
               Conread position:242-505
               
               
               Cow position:chr19:23340971-23340711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 193

               
               
               Conread position:242-524
               
               
               Cow position:chr19:22513780-22513498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):64, 235

               
               
               Conread position:242-527
               
               
               Cow position:chr19:25025560-25025832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr19:23005426-23005713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-529
               
               
               Cow position:chr19:6516201-6515912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:242-529
               
               
               Cow position:chr19:15499450-15499163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:242-533
               
               
               Cow position:chr19:24801625-24801917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:242-547
               
               
               Cow position:chr19:40875430-40875740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 301

               
               
               Conread position:242-556
               
               
               Cow position:chr19:1505060-1504770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):192, 46

               
               
               Conread position:242-559
               
               
               Cow position:chr19:20693431-20693105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 103

               
               
               Conread position:242-579
               
               
               Cow position:chr19:2734385-2734054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 91

               
               
               Conread position:242-579
               
               
               Cow position:chr19:25053738-25054070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-579
               
               
               Cow position:chr19:35540231-35539907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:242-591
               
               
               Cow position:chr19:33033507-33033863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-597
               
               
               Cow position:chr19:7475649-7476007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-603
               
               
               Cow position:chr19:50177767-50177407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 181

               
               
               Conread position:242-604
               
               
               Cow position:chr19:8839537-8839177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 103

               
               
               Conread position:242-620
               
               
               Cow position:chr19:27348336-27348704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 85

               
               
               Conread position:242-620
               
               
               Cow position:chr19:34955759-34956136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr19:47109973-47109580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):206, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr19:15068070-15068434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr19:20670961-20671345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr19:27612239-27612621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 21

               
               
               Conread position:242-621
               
               
               Cow position:chr19:29980207-29980587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr19:31825078-31825472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:242-621
               
               
               Cow position:chr19:39924606-39924227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:242-621
               
               
               Cow position:chr19:43441100-43440728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 86

               
               
               Conread position:242-622
               
               
               Cow position:chr19:18695175-18695556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 155

               
               
               Conread position:242-622
               
               
               Cow position:chr19:31395959-31396338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 39

               
               
               Conread position:242-622
               
               
               Cow position:chr19:39576636-39577011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr19:5185310-5185692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 335

               
               
               Conread position:242-623
               
               
               Cow position:chr19:8033680-8033296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:242-623
               
               
               Cow position:chr19:31874047-31873664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-623
               
               
               Cow position:chr19:46918784-46918392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 283

               
               
               Conread position:242-623
               
               
               Cow position:chr19:56150134-56150500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:242-624
               
               
               Cow position:chr19:2589443-2589072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-624
               
               
               Cow position:chr19:8375371-8375743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr19:3084274-3084651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:242-625
               
               
               Cow position:chr19:4279708-4279322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr19:20661477-20661860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 155

               
               
               Conread position:242-625
               
               
               Cow position:chr19:23786127-23785746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 246

               
               
               Conread position:242-625
               
               
               Cow position:chr19:30540123-30540506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:242-625
               
               
               Cow position:chr19:35310710-35311082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:242-625
               
               
               Cow position:chr19:42240357-42240735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 103

               
               
               Conread position:243-346
               
               
               Cow position:chr19:15719685-15719787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:243-380
               
               
               Cow position:chr19:38723913-38724050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:243-391
               
               
               Cow position:chr19:48960329-48960179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:243-447
               
               
               Cow position:chr19:25572380-25572179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:243-456
               
               
               Cow position:chr19:22217357-22217571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-533
               
               
               Cow position:chr19:14592987-14592701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:243-620
               
               
               Cow position:chr19:21199070-21198686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:243-621
               
               
               Cow position:chr19:17795830-17795454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 99

               
               
               Conread position:244-393
               
               
               Cow position:chr19:30468532-30468382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-440
               
               
               Cow position:chr19:3621363-3621168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):181, 114

               
               
               Conread position:244-448
               
               
               Cow position:chr19:48722962-48722758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 189

               
               
               Conread position:244-498
               
               
               Cow position:chr19:24144953-24144689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 179

               
               
               Conread position:244-621
               
               
               Cow position:chr19:5656183-5656550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:244-625
               
               
               Cow position:chr19:52147175-52147555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:245-389
               
               
               Cow position:chr19:25769596-25769452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-403
               
               
               Cow position:chr19:37423337-37423499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:245-407
               
               
               Cow position:chr19:51621252-51621410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:245-416
               
               
               Cow position:chr19:6531821-6531655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr19:35762321-35762504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:245-437
               
               
               Cow position:chr19:34911819-34911629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):188, 159

               
               
               Conread position:245-446
               
               
               Cow position:chr19:52381461-52381266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-449
               
               
               Cow position:chr19:38637874-38638070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:245-451
               
               
               Cow position:chr19:11163150-11163352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:245-458
               
               
               Cow position:chr19:21335675-21335889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:245-459
               
               
               Cow position:chr19:1898304-1898512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:245-460
               
               
               Cow position:chr19:15887393-15887602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:245-464
               
               
               Cow position:chr19:50646656-50646868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:245-528
               
               
               Cow position:chr19:38340048-38340319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-591
               
               
               Cow position:chr19:17273798-17274126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 89

               
               
               Conread position:245-620
               
               
               Cow position:chr19:15863111-15863496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 15

               
               
               Conread position:245-623
               
               
               Cow position:chr19:10786437-10786801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:245-623
               
               
               Cow position:chr19:33932217-33932586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 84

               
               
               Conread position:245-624
               
               
               Cow position:chr19:21379995-21380370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:246-516
               
               
               Cow position:chr19:52773249-52773512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:246-624
               
               
               Cow position:chr19:11171288-11171666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:246-625
               
               
               Cow position:chr19:23222566-23222199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:247-367
               
               
               Cow position:chr19:15442695-15442574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 68

               
               
               Conread position:247-372
               
               
               Cow position:chr19:52675172-52675300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-428
               
               
               Cow position:chr19:32754454-32754267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:247-485
               
               
               Cow position:chr19:18750144-18750386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-512
               
               
               Cow position:chr19:6610065-6610330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 246

               
               
               Conread position:247-534
               
               
               Cow position:chr19:56063504-56063782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:247-579
               
               
               Cow position:chr19:14928726-14929072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:247-600
               
               
               Cow position:chr19:51267824-51267488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-625
               
               
               Cow position:chr19:3246121-3246479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 98

               
               
               Conread position:248-407
               
               
               Cow position:chr19:25835428-25835583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:248-427
               
               
               Cow position:chr19:34001135-34000965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:248-624
               
               
               Cow position:chr19:55210538-55210920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 97

               
               
               Conread position:254-372
               
               
               Cow position:chr19:10556963-10556847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:254-426
               
               
               Cow position:chr19:30471421-30471582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:254-455
               
               
               Cow position:chr19:39794882-39794682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:254-510
               
               
               Cow position:chr19:4587798-4588050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 102

               
               
               Conread position:254-624
               
               
               Cow position:chr19:39245823-39245474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:258-389
               
               
               Cow position:chr19:42564056-42563923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:258-420
               
               
               Cow position:chr19:53840442-53840276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:258-449
               
               
               Cow position:chr19:3812093-3812284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-451
               
               
               Cow position:chr19:53791507-53791701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:258-550
               
               
               Cow position:chr19:25696285-25696575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:258-623
               
               
               Cow position:chr19:4448458-4448098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:258-623
               
               
               Cow position:chr19:24358311-24358675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 70

               
               
               Conread position:259-411
               
               
               Cow position:chr19:25382781-25382936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:259-580
               
               
               Cow position:chr19:25999547-25999236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:260-452
               
               
               Cow position:chr19:7492351-7492167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):183, 85

               
               
               Conread position:260-455
               
               
               Cow position:chr19:54666736-54666932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:260-468
               
               
               Cow position:chr19:17664559-17664353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:261-502
               
               
               Cow position:chr19:12019368-12019135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:263-623
               
               
               Cow position:chr19:25086445-25086083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 5

               
               
               Conread position:265-624
               
               
               Cow position:chr19:30232640-30232301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:266-452
               
               
               Cow position:chr19:33882250-33882429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:270-613
               
               
               Cow position:chr19:39751391-39751044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 179

               
               
               Conread position:199-457
               
               
               Cow position:chr2:51594758-51594500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:215-449
               
               
               Cow position:chr2:14555772-14556008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:215-559
               
               
               Cow position:chr2:47066601-47066947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:215-617
               
               
               Cow position:chr2:76562083-76561686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 49

               
               
               Conread position:215-624
               
               
               Cow position:chr2:46184289-46184706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 293

               
               
               Conread position:215-625
               
               
               Cow position:chr2:55387520-55387117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:216-457
               
               
               Cow position:chr2:18621384-18621141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:216-459
               
               
               Cow position:chr2:27173349-27173100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:216-483
               
               
               Cow position:chr2:41185449-41185180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:216-565
               
               
               Cow position:chr2:80116075-80115749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:217-429
               
               
               Cow position:chr2:26042266-26042475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:217-446
               
               
               Cow position:chr2:6912681-6912450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:217-533
               
               
               Cow position:chr2:57921134-57921453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:217-535
               
               
               Cow position:chr2:70640881-70641203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:217-621
               
               
               Cow position:chr2:70945378-70944970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:219-444
               
               
               Cow position:chr2:41057540-41057754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:219-459
               
               
               Cow position:chr2:333119-333344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:221-441
               
               
               Cow position:chr2:49467600-49467370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:221-558
               
               
               Cow position:chr2:15571558-15571898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:221-618
               
               
               Cow position:chr2:23847855-23848230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:223-327
               
               
               Cow position:chr2:46112465-46112573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:223-420
               
               
               Cow position:chr2:44229723-44229918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:223-421
               
               
               Cow position:chr2:46020876-46020676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:223-579
               
               
               Cow position:chr2:29269029-29268678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:223-625
               
               
               Cow position:chr2:45469976-45469573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:224-399
               
               
               Cow position:chr2:40488779-40488604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:224-437
               
               
               Cow position:chr2:44550873-44551079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:224-619
               
               
               Cow position:chr2:21766-22164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:224-623
               
               
               Cow position:chr2:39263460-39263053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:224-624
               
               
               Cow position:chr2:19212086-19212475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:224-624
               
               
               Cow position:chr2:44191447-44191048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:224-624
               
               
               Cow position:chr2:77359448-77359043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:224-625
               
               
               Cow position:chr2:14710142-14710555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:226-405
               
               
               Cow position:chr2:44232483-44232668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 165

               
               
               Conread position:226-445
               
               
               Cow position:chr2:85930425-85930204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:226-459
               
               
               Cow position:chr2:25928422-25928186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:226-498
               
               
               Cow position:chr2:26500969-26501246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 274

               
               
               Conread position:226-591
               
               
               Cow position:chr2:21355884-21356244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 201

               
               
               Conread position:226-619
               
               
               Cow position:chr2:15059095-15059486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 213

               
               
               Conread position:226-621
               
               
               Cow position:chr2:61485592-61485207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:227-420
               
               
               Cow position:chr2:15597510-15597698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:227-447
               
               
               Cow position:chr2:6282050-6282265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:227-530
               
               
               Cow position:chr2:53575064-53574772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:227-532
               
               
               Cow position:chr2:76969211-76969516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 275

               
               
               Conread position:227-543
               
               
               Cow position:chr2:80324887-80325198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:227-615
               
               
               Cow position:chr2:53649988-53649615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-619
               
               
               Cow position:chr2:71624422-71624809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 13

               
               
               Conread position:227-621
               
               
               Cow position:chr2:28118463-28118079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:227-621
               
               
               Cow position:chr2:32416894-32417298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 169

               
               
               Conread position:228-433
               
               
               Cow position:chr2:31529469-31529271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):185, 24

               
               
               Conread position:228-450
               
               
               Cow position:chr2:46994793-46995010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:228-459
               
               
               Cow position:chr2:24434317-24434552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:228-468
               
               
               Cow position:chr2:66916752-66916999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:228-533
               
               
               Cow position:chr2:1300428-1300721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 131

               
               
               Conread position:228-618
               
               
               Cow position:chr2:61096866-61096485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:228-624
               
               
               Cow position:chr2:9591897-9591508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 219

               
               
               Conread position:230-380
               
               
               Cow position:chr2:1762756-1762601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:230-448
               
               
               Cow position:chr2:80839172-80839386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 116

               
               
               Conread position:230-625
               
               
               Cow position:chr2:46202231-46201856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 195

               
               
               Conread position:231-469
               
               
               Cow position:chr2:48864025-48864253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:237-449
               
               
               Cow position:chr2:42872221-42872010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:237-624
               
               
               Cow position:chr2:55877337-55876968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 5

               
               
               Conread position:238-442
               
               
               Cow position:chr2:1203636-1203430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:238-471
               
               
               Cow position:chr2:53430677-53430452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:239-390
               
               
               Cow position:chr2:1638551-1638400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:128
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-395
               
               
               Cow position:chr2:46120693-46120840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:239-427
               
               
               Cow position:chr2:13604417-13604230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:239-444
               
               
               Cow position:chr2:43577848-43578049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:239-603
               
               
               Cow position:chr2:38273494-38273128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:239-621
               
               
               Cow position:chr2:48617931-48617542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 261

               
               
               Conread position:240-442
               
               
               Cow position:chr2:16839581-16839383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:240-446
               
               
               Cow position:chr2:19287134-19287331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-450
               
               
               Cow position:chr2:47073142-47072933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:240-558
               
               
               Cow position:chr2:29716879-29717212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 273

               
               
               Conread position:240-574
               
               
               Cow position:chr2:85281167-85281514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:240-607
               
               
               Cow position:chr2:26555639-26555995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:240-623
               
               
               Cow position:chr2:78300158-78300538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:240-624
               
               
               Cow position:chr2:2590003-2590379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 105

               
               
               Conread position:240-624
               
               
               Cow position:chr2:20900514-20900901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 310

               
               
               Conread position:241-486
               
               
               Cow position:chr2:79098002-79098243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:241-564
               
               
               Cow position:chr2:65269743-65270066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 198

               
               
               Conread position:241-621
               
               
               Cow position:chr2:42394368-42394005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:242-342
               
               
               Cow position:chr2:76764758-76764858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr2:8354997-8355112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr2:76122514-76122634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-376
               
               
               Cow position:chr2:19246612-19246749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-376
               
               
               Cow position:chr2:21078525-21078391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-378
               
               
               Cow position:chr2:70495219-70495085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr2:17328695-17328561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:242-383
               
               
               Cow position:chr2:46353548-46353685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr2:17493373-17493515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr2:47152587-47152731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr2:827668-827805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr2:29121827-29121692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr2:40484575-40484724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-402
               
               
               Cow position:chr2:44051256-44051093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr2:39513970-39513813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:242-405
               
               
               Cow position:chr2:42936265-42936426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr2:78229765-78229605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:242-414
               
               
               Cow position:chr2:38362422-38362594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-415
               
               
               Cow position:chr2:45391570-45391750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:242-416
               
               
               Cow position:chr2:47808675-47808505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:242-416
               
               
               Cow position:chr2:60462874-60463040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr2:60468253-60468419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr2:80275347-80275516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr2:25597549-25597719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr2:20933736-20933561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):172, 103

               
               
               Conread position:242-427
               
               
               Cow position:chr2:41088168-41088364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr2:6697549-6697733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:242-431
               
               
               Cow position:chr2:41461312-41461125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:242-432
               
               
               Cow position:chr2:15329337-15329162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-436
               
               
               Cow position:chr2:80903981-80904169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr2:20968300-20968504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr2:36630919-36630717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-446
               
               
               Cow position:chr2:47990382-47990186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:242-447
               
               
               Cow position:chr2:42309608-42309809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:242-447
               
               
               Cow position:chr2:75600670-75600457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):58, 190

               
               
               Conread position:242-448
               
               
               Cow position:chr2:80797615-80797419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr2:11617043-11616842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:242-449
               
               
               Cow position:chr2:63568312-63568115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr2:34492381-34492186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr2:13354622-13354415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-452
               
               
               Cow position:chr2:37113259-37113458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:242-452
               
               
               Cow position:chr2:39068252-39068049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr2:41954830-41954616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 183

               
               
               Conread position:242-459
               
               
               Cow position:chr2:80014-80226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr2:42927501-42927718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr2:47138787-47138570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr2:77378192-77377969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:242-476
               
               
               Cow position:chr2:25283761-25283526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-476
               
               
               Cow position:chr2:25285505-25285270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-477
               
               
               Cow position:chr2:33972390-33972150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-479
               
               
               Cow position:chr2:39593284-39593046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-484
               
               
               Cow position:chr2:63274001-63274252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):158, 12

               
               
               Conread position:242-486
               
               
               Cow position:chr2:45535410-45535176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-487
               
               
               Cow position:chr2:15568237-15568480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr2:73985070-73985323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-494
               
               
               Cow position:chr2:74031037-74031290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-505
               
               
               Cow position:chr2:74260402-74260146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr2:13543971-13543712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:242-508
               
               
               Cow position:chr2:21284880-21284623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 103

               
               
               Conread position:242-517
               
               
               Cow position:chr2:208355-208633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-517
               
               
               Cow position:chr2:37920836-37921103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr2:1210819-1211104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-536
               
               
               Cow position:chr2:82647874-82648145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-543
               
               
               Cow position:chr2:76110343-76110034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:242-555
               
               
               Cow position:chr2:51638502-51638183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:242-565
               
               
               Cow position:chr2:13001748-13001442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-565
               
               
               Cow position:chr2:64473691-64474003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:242-566
               
               
               Cow position:chr2:16513806-16513488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):60, 193

               
               
               Conread position:242-570
               
               
               Cow position:chr2:31401498-31401825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:242-570
               
               
               Cow position:chr2:46294092-46294412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-583
               
               
               Cow position:chr2:42255382-42255044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 77

               
               
               Conread position:242-583
               
               
               Cow position:chr2:45499256-45499582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-584
               
               
               Cow position:chr2:49344659-49344323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:242-591
               
               
               Cow position:chr2:6038954-6038609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:242-592
               
               
               Cow position:chr2:45259137-45259476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:242-607
               
               
               Cow position:chr2:69747673-69748036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 98

               
               
               Conread position:242-616
               
               
               Cow position:chr2:70704201-70703837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:242-618
               
               
               Cow position:chr2:65024236-65023870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:242-619
               
               
               Cow position:chr2:549382-549745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 103

               
               
               Conread position:242-619
               
               
               Cow position:chr2:841111-840733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 346

               
               
               Conread position:242-619
               
               
               Cow position:chr2:21416251-21415884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 48

               
               
               Conread position:242-619
               
               
               Cow position:chr2:24271179-24270797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:242-620
               
               
               Cow position:chr2:3624233-3623858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr2:18997671-18997305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 103

               
               
               Conread position:242-620
               
               
               Cow position:chr2:48069452-48069826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 169

               
               
               Conread position:242-620
               
               
               Cow position:chr2:48896242-48895861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr2:1364939-1365323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 279

               
               
               Conread position:242-621
               
               
               Cow position:chr2:2673472-2673096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr2:11806269-11805890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 174

               
               
               Conread position:242-621
               
               
               Cow position:chr2:14884230-14883854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr2:30959845-30959467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-621
               
               
               Cow position:chr2:37072764-37072380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 257

               
               
               Conread position:242-621
               
               
               Cow position:chr2:39941436-39941067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr2:45912688-45913064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 148

               
               
               Conread position:242-621
               
               
               Cow position:chr2:79404048-79403662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-622
               
               
               Cow position:chr2:38628853-38628486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr2:7524188-7524567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:242-623
               
               
               Cow position:chr2:27337828-27338218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:242-623
               
               
               Cow position:chr2:41452180-41451797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 173

               
               
               Conread position:242-623
               
               
               Cow position:chr2:42226323-42226701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 55

               
               
               Conread position:242-623
               
               
               Cow position:chr2:44170504-44170128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 12

               
               
               Conread position:242-623
               
               
               Cow position:chr2:56828622-56828999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr2:10867951-10868345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):181, 56

               
               
               Conread position:242-624
               
               
               Cow position:chr2:13369602-13369221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 81

               
               
               Conread position:242-624
               
               
               Cow position:chr2:28820309-28819933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 103

               
               
               Conread position:242-624
               
               
               Cow position:chr2:36007639-36008010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 103

               
               
               Conread position:242-624
               
               
               Cow position:chr2:36077298-36076918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:242-624
               
               
               Cow position:chr2:39662647-39662265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 90

               
               
               Conread position:242-624
               
               
               Cow position:chr2:47115973-47116337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 44

               
               
               Conread position:242-624
               
               
               Cow position:chr2:61974745-61974351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 304

               
               
               Conread position:242-624
               
               
               Cow position:chr2:85091087-85091468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:242-625
               
               
               Cow position:chr2:893758-894137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:242-625
               
               
               Cow position:chr2:2099627-2100011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr2:5598489-5598105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr2:9955517-9955901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr2:10469339-10468956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 222

               
               
               Conread position:242-625
               
               
               Cow position:chr2:10608082-10608465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 364

               
               
               Conread position:242-625
               
               
               Cow position:chr2:14206333-14206700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 227

               
               
               Conread position:242-625
               
               
               Cow position:chr2:14854261-14853893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr2:16326219-16326603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 129

               
               
               Conread position:242-625
               
               
               Cow position:chr2:19494157-19493772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:242-625
               
               
               Cow position:chr2:21607263-21606872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:242-625
               
               
               Cow position:chr2:25967317-25967694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 153

               
               
               Conread position:242-625
               
               
               Cow position:chr2:29955375-29955754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr2:35980739-35981122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 331

               
               
               Conread position:242-625
               
               
               Cow position:chr2:42362840-42363224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:242-625
               
               
               Cow position:chr2:42599878-42599471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 181

               
               
               Conread position:242-625
               
               
               Cow position:chr2:43609159-43609526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr2:44095076-44094695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-625
               
               
               Cow position:chr2:51406612-51406245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr2:52171203-52170828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:242-625
               
               
               Cow position:chr2:67417056-67417439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr2:70674673-70674304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:242-625
               
               
               Cow position:chr2:74236341-74236730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 334

               
               
               Conread position:242-625
               
               
               Cow position:chr2:77860022-77859649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr2:83887638-83887252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-343
               
               
               Cow position:chr2:46130204-46130304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-437
               
               
               Cow position:chr2:46331005-46330811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-440
               
               
               Cow position:chr2:53851381-53851185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:243-449
               
               
               Cow position:chr2:1658439-1658242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:243-456
               
               
               Cow position:chr2:46189153-46189354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr2:2689113-2688906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:243-459
               
               
               Cow position:chr2:16422499-16422287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr2:42938354-42938567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:243-516
               
               
               Cow position:chr2:32115022-32114742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 252

               
               
               Conread position:243-550
               
               
               Cow position:chr2:52344700-52344404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:243-623
               
               
               Cow position:chr2:42800989-42800621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr2:48849528-48849911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-414
               
               
               Cow position:chr2:68970683-68970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:244-424
               
               
               Cow position:chr2:68716725-68716901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:244-438
               
               
               Cow position:chr2:46194740-46194549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:244-446
               
               
               Cow position:chr2:45665975-45665779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-451
               
               
               Cow position:chr2:17967085-17967292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 199

               
               
               Conread position:244-496
               
               
               Cow position:chr2:9063216-9062966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:244-546
               
               
               Cow position:chr2:5807240-5807543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-566
               
               
               Cow position:chr2:64212614-64212929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:244-611
               
               
               Cow position:chr2:31620052-31620416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:244-621
               
               
               Cow position:chr2:31783881-31783515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 109

               
               
               Conread position:244-623
               
               
               Cow position:chr2:68488061-68488436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr2:17264721-17265103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr2:23348759-23348380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 193

               
               
               Conread position:245-349
               
               
               Cow position:chr2:28257407-28257300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:245-406
               
               
               Cow position:chr2:69823531-69823373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:245-407
               
               
               Cow position:chr2:21380453-21380618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:245-417
               
               
               Cow position:chr2:28318910-28319077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:245-419
               
               
               Cow position:chr2:47119571-47119399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:245-425
               
               
               Cow position:chr2:81348938-81349118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-427
               
               
               Cow position:chr2:34535213-34535393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:245-427
               
               
               Cow position:chr2:69770446-69770268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr2:15250122-15249946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-435
               
               
               Cow position:chr2:74249280-74249470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:245-438
               
               
               Cow position:chr2:14396301-14396485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:245-446
               
               
               Cow position:chr2:37347743-37347546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-447
               
               
               Cow position:chr2:36436148-36435946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-452
               
               
               Cow position:chr2:28653586-28653790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:245-457
               
               
               Cow position:chr2:40882020-40881824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr2:62685579-62685370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-473
               
               
               Cow position:chr2:42608009-42607790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:245-516
               
               
               Cow position:chr2:81388633-81388367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:245-521
               
               
               Cow position:chr2:27178600-27178321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:245-543
               
               
               Cow position:chr2:23712828-23712540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:245-544
               
               
               Cow position:chr2:41019271-41019544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:245-579
               
               
               Cow position:chr2:50445842-50445507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-598
               
               
               Cow position:chr2:46362771-46362417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-620
               
               
               Cow position:chr2:6884167-6883814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:245-620
               
               
               Cow position:chr2:32406624-32406239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 43

               
               
               Conread position:245-622
               
               
               Cow position:chr2:39815341-39815708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr2:38658839-38659208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:245-624
               
               
               Cow position:chr2:55632721-55632343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr2:59397112-59397491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:245-625
               
               
               Cow position:chr2:6003110-6003493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 162

               
               
               Conread position:246-396
               
               
               Cow position:chr2:43790045-43789901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:246-430
               
               
               Cow position:chr2:17114790-17114974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-445
               
               
               Cow position:chr2:66403985-66404181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:246-448
               
               
               Cow position:chr2:16594554-16594351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:246-448
               
               
               Cow position:chr2:16632883-16632680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:246-624
               
               
               Cow position:chr2:1303891-1303518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:247-369
               
               
               Cow position:chr2:72630370-72630250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-398
               
               
               Cow position:chr2:73637232-73637383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:247-403
               
               
               Cow position:chr2:16564629-16564472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:247-451
               
               
               Cow position:chr2:32489468-32489658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:247-455
               
               
               Cow position:chr2:4223320-4223528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 100

               
               
               Conread position:247-459
               
               
               Cow position:chr2:4273328-4273537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):185, 98

               
               
               Conread position:247-463
               
               
               Cow position:chr2:46244078-46244297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-463
               
               
               Cow position:chr2:70539431-70539647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:247-565
               
               
               Cow position:chr2:52385976-52386294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:247-566
               
               
               Cow position:chr2:56102523-56102843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 186

               
               
               Conread position:247-600
               
               
               Cow position:chr2:69581564-69581916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 179

               
               
               Conread position:247-616
               
               
               Cow position:chr2:45936018-45936379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 60

               
               
               Conread position:247-623
               
               
               Cow position:chr2:49608531-49608161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:247-623
               
               
               Cow position:chr2:71163772-71164150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 110

               
               
               Conread position:247-624
               
               
               Cow position:chr2:21644509-21644886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:247-624
               
               
               Cow position:chr2:36105208-36104824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 87

               
               
               Conread position:247-624
               
               
               Cow position:chr2:69676591-69676967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-624
               
               
               Cow position:chr2:72527900-72527523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 226

               
               
               Conread position:247-624
               
               
               Cow position:chr2:76340715-76341098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-625
               
               
               Cow position:chr2:69223279-69223664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:248-393
               
               
               Cow position:chr2:4655156-4655301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:127
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-459
               
               
               Cow position:chr2:85925999-85925794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:248-623
               
               
               Cow position:chr2:82580991-82581361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:249-384
               
               
               Cow position:chr2:25757686-25757824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:249-426
               
               
               Cow position:chr2:1134450-1134628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:249-456
               
               
               Cow position:chr2:57393352-57393559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:249-458
               
               
               Cow position:chr2:1755974-1755771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:249-623
               
               
               Cow position:chr2:60956312-60955955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:250-358
               
               
               Cow position:chr2:25448267-25448161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:250-461
               
               
               Cow position:chr2:66480250-66480454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 79

               
               
               Conread position:250-617
               
               
               Cow position:chr2:85339521-85339891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 80

               
               
               Conread position:251-504
               
               
               Cow position:chr2:1073470-1073230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:251-623
               
               
               Cow position:chr2:6539298-6539668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:251-624
               
               
               Cow position:chr2:55480300-55480682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:252-393
               
               
               Cow position:chr2:16505539-16505678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:253-391
               
               
               Cow position:chr2:66649564-66649422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:253-459
               
               
               Cow position:chr2:67479919-67479715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:253-624
               
               
               Cow position:chr2:9687636-9687993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:254-624
               
               
               Cow position:chr2:26438791-26439157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:255-428
               
               
               Cow position:chr2:19294525-19294366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:255-597
               
               
               Cow position:chr2:47104986-47105338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 168

               
               
               Conread position:256-625
               
               
               Cow position:chr2:46357772-46357415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:257-533
               
               
               Cow position:chr2:45784661-45784395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 16

               
               
               Conread position:258-424
               
               
               Cow position:chr2:26806187-26806346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:258-448
               
               
               Cow position:chr2:85496389-85496569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:258-451
               
               
               Cow position:chr2:32048411-32048229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:258-458
               
               
               Cow position:chr2:6356454-6356653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr2:41157904-41157696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:258-516
               
               
               Cow position:chr2:41710807-41710564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:258-521
               
               
               Cow position:chr2:1095829-1095577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:258-543
               
               
               Cow position:chr2:44065521-44065241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:258-576
               
               
               Cow position:chr2:75561770-75561452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 157

               
               
               Conread position:259-444
               
               
               Cow position:chr2:21382924-21383109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:260-394
               
               
               Cow position:chr2:71622121-71622254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:260-617
               
               
               Cow position:chr2:28711063-28711399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:263-547
               
               
               Cow position:chr2:44167998-44167711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):198, 29

               
               
               Conread position:263-623
               
               
               Cow position:chr2:22254237-22254592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:264-546
               
               
               Cow position:chr2:46227390-46227114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:265-422
               
               
               Cow position:chr2:56002939-56002784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:265-625
               
               
               Cow position:chr2:36017492-36017854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):234, 57

               
               
               Conread position:266-438
               
               
               Cow position:chr2:41008347-41008510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:266-449
               
               
               Cow position:chr2:62744085-62744264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:268-449
               
               
               Cow position:chr2:80177841-80178020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:270-358
               
               
               Cow position:chr2:30144640-30144552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-407
               
               
               Cow position:chr2:46051386-46051518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:270-498
               
               
               Cow position:chr2:33251161-33251381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:270-625
               
               
               Cow position:chr2:43596249-43596601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr20:40446379-40446191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:212-367
               
               
               Cow position:chr20:22722048-22721887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 151

               
               
               Conread position:214-416
               
               
               Cow position:chr20:34365046-34364853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:214-618
               
               
               Cow position:chr20:23792629-23792218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:215-403
               
               
               Cow position:chr20:28831989-28831794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:215-484
               
               
               Cow position:chr20:22235334-22235062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:215-623
               
               
               Cow position:chr20:6096473-6096873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:217-456
               
               
               Cow position:chr20:14572345-14572580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:221-427
               
               
               Cow position:chr20:6603054-6602848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:221-500
               
               
               Cow position:chr20:31799188-31799459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:222-508
               
               
               Cow position:chr20:21714769-21714478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:223-444
               
               
               Cow position:chr20:34251667-34251888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:224-376
               
               
               Cow position:chr20:6108512-6108358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-451
               
               
               Cow position:chr20:26680137-26679907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:224-624
               
               
               Cow position:chr20:20352907-20353304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:225-524
               
               
               Cow position:chr20:39728459-39728161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:226-621
               
               
               Cow position:chr20:22313153-22313543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:226-623
               
               
               Cow position:chr20:23064821-23065232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:226-625
               
               
               Cow position:chr20:41977417-41977032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:227-378
               
               
               Cow position:chr20:4334521-4334664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:227-386
               
               
               Cow position:chr20:13025606-13025760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:227-621
               
               
               Cow position:chr20:40177253-40176866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:227-624
               
               
               Cow position:chr20:31927449-31927848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:234-427
               
               
               Cow position:chr20:9988583-9988394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:237-583
               
               
               Cow position:chr20:12334368-12334033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:237-623
               
               
               Cow position:chr20:34597108-34597512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 5

               
               
               Conread position:239-384
               
               
               Cow position:chr20:39247902-39247759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:239-553
               
               
               Cow position:chr20:1581278-1580964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 228

               
               
               Conread position:240-327
               
               
               Cow position:chr20:23103210-23103123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-541
               
               
               Cow position:chr20:207029-207330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 210

               
               
               Conread position:240-543
               
               
               Cow position:chr20:33144562-33144862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:240-624
               
               
               Cow position:chr20:4945256-4945635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:240-625
               
               
               Cow position:chr20:30817525-30817145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 102

               
               
               Conread position:241-378
               
               
               Cow position:chr20:2298787-2298926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:241-445
               
               
               Cow position:chr20:7600792-7600988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:242-375
               
               
               Cow position:chr20:22484851-22484719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-383
               
               
               Cow position:chr20:28441317-28441177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr20:5636472-5636325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr20:22345875-22345723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr20:15312652-15312499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr20:24566977-24567138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 147

               
               
               Conread position:242-409
               
               
               Cow position:chr20:16935311-16935478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr20:36207793-36207615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:149
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr20:37272702-37272524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:242-427
               
               
               Cow position:chr20:11043514-11043689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr20:11542295-11542476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:242-427
               
               
               Cow position:chr20:32084093-32084277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr20:23846681-23846867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr20:9379398-9379195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-450
               
               
               Cow position:chr20:15235757-15235548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):164, 184

               
               
               Conread position:242-451
               
               
               Cow position:chr20:33279720-33279931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-454
               
               
               Cow position:chr20:40511770-40511977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:242-455
               
               
               Cow position:chr20:11482146-11482360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr20:23936419-23936635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 176

               
               
               Conread position:242-456
               
               
               Cow position:chr20:20471770-20471568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):187, 39

               
               
               Conread position:242-456
               
               
               Cow position:chr20:26996522-26996312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr20:31081029-31080822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):179, 55

               
               
               Conread position:242-458
               
               
               Cow position:chr20:22704280-22704064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr20:4205956-4205738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr20:5826929-5826712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-470
               
               
               Cow position:chr20:20312758-20312973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr20:10372305-10372535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr20:15548912-15549135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 42

               
               
               Conread position:242-481
               
               
               Cow position:chr20:39517995-39517765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):226, 134

               
               
               Conread position:242-499
               
               
               Cow position:chr20:7659230-7659474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-502
               
               
               Cow position:chr20:14804254-14803993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-502
               
               
               Cow position:chr20:35999680-35999419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 163

               
               
               Conread position:242-520
               
               
               Cow position:chr20:10884369-10884652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-542
               
               
               Cow position:chr20:35797597-35797299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 75

               
               
               Conread position:242-546
               
               
               Cow position:chr20:39398474-39398168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 88

               
               
               Conread position:242-557
               
               
               Cow position:chr20:19328390-19328080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 79

               
               
               Conread position:242-558
               
               
               Cow position:chr20:9126725-9126413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 114

               
               
               Conread position:242-559
               
               
               Cow position:chr20:13450418-13450737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-564
               
               
               Cow position:chr20:35641028-35640705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-566
               
               
               Cow position:chr20:20566247-20565935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:242-588
               
               
               Cow position:chr20:24069792-24069462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-589
               
               
               Cow position:chr20:17904148-17903804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 109

               
               
               Conread position:242-594
               
               
               Cow position:chr20:38817994-38817657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-595
               
               
               Cow position:chr20:28982687-28982341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-606
               
               
               Cow position:chr20:40256959-40256617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:242-607
               
               
               Cow position:chr20:33532294-33531937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:242-616
               
               
               Cow position:chr20:18320803-18321176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 231

               
               
               Conread position:242-618
               
               
               Cow position:chr20:12420631-12421022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 46

               
               
               Conread position:242-618
               
               
               Cow position:chr20:22445649-22446021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 49

               
               
               Conread position:242-619
               
               
               Cow position:chr20:19363377-19363746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:242-619
               
               
               Cow position:chr20:33177178-33176815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:242-620
               
               
               Cow position:chr20:28605192-28604829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr20:3781438-3781819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 118

               
               
               Conread position:242-621
               
               
               Cow position:chr20:8578236-8577861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr20:10235844-10235465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr20:26469075-26469466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-623
               
               
               Cow position:chr20:6423960-6423579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 42

               
               
               Conread position:242-623
               
               
               Cow position:chr20:23679159-23679542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:242-623
               
               
               Cow position:chr20:24391968-24391606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 53

               
               
               Conread position:242-624
               
               
               Cow position:chr20:5104452-5104824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:242-624
               
               
               Cow position:chr20:10469054-10468685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:242-624
               
               
               Cow position:chr20:18185555-18185183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 55

               
               
               Conread position:242-625
               
               
               Cow position:chr20:580935-581312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:242-625
               
               
               Cow position:chr20:9473626-9474004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:242-625
               
               
               Cow position:chr20:11350927-11350543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr20:14011962-14011594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr20:14837420-14837035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 308

               
               
               Conread position:242-625
               
               
               Cow position:chr20:16407667-16407293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr20:18651842-18651458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr20:19653311-19653693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:242-625
               
               
               Cow position:chr20:19846002-19845611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr20:25844075-25844458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 153

               
               
               Conread position:242-625
               
               
               Cow position:chr20:26825642-26826013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:242-625
               
               
               Cow position:chr20:34458040-34458424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr20:35094752-35094372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr20:37153733-37154117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-360
               
               
               Cow position:chr20:25162141-25162258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-412
               
               
               Cow position:chr20:27407887-27408056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:140
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr20:39019681-39019471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:243-499
               
               
               Cow position:chr20:38139896-38139640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:244-398
               
               
               Cow position:chr20:7438867-7439013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:244-402
               
               
               Cow position:chr20:7211026-7210867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:244-452
               
               
               Cow position:chr20:38768470-38768671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:244-524
               
               
               Cow position:chr20:7426206-7426479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 19

               
               
               Conread position:244-532
               
               
               Cow position:chr20:6240535-6240827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:244-566
               
               
               Cow position:chr20:31740235-31740544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:244-569
               
               
               Cow position:chr20:8556284-8556603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 179

               
               
               Conread position:244-622
               
               
               Cow position:chr20:11550352-11549978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 91

               
               
               Conread position:245-384
               
               
               Cow position:chr20:36010781-36010639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr20:282941-283088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:245-427
               
               
               Cow position:chr20:34108097-34107923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr20:21928891-21928710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:245-433
               
               
               Cow position:chr20:34097972-34098157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:245-437
               
               
               Cow position:chr20:15565840-15566034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-438
               
               
               Cow position:chr20:38414984-38415176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):189, 98

               
               
               Conread position:245-440
               
               
               Cow position:chr20:34240520-34240322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):52, 172

               
               
               Conread position:245-445
               
               
               Cow position:chr20:32068867-32069069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-445
               
               
               Cow position:chr20:35907066-35907257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:245-448
               
               
               Cow position:chr20:28296277-28296076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:245-452
               
               
               Cow position:chr20:14735661-14735459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr20:11923257-11923463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-579
               
               
               Cow position:chr20:19751293-19750967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 70

               
               
               Conread position:245-588
               
               
               Cow position:chr20:32636583-32636928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:245-589
               
               
               Cow position:chr20:41119897-41119568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 72

               
               
               Conread position:245-618
               
               
               Cow position:chr20:3035089-3034719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 173

               
               
               Conread position:245-622
               
               
               Cow position:chr20:20983982-20983638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr20:15069126-15068758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 50

               
               
               Conread position:245-624
               
               
               Cow position:chr20:9537122-9536747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:245-624
               
               
               Cow position:chr20:17733789-17734166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:246-343
               
               
               Cow position:chr20:11392680-11392583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-456
               
               
               Cow position:chr20:37200343-37200138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):56, 127

               
               
               Conread position:246-463
               
               
               Cow position:chr20:3331303-3331523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:246-614
               
               
               Cow position:chr20:29845034-29844663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:247-364
               
               
               Cow position:chr20:4892836-4892956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-384
               
               
               Cow position:chr20:41309521-41309386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-393
               
               
               Cow position:chr20:18837173-18837320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:247-404
               
               
               Cow position:chr20:3321158-3321308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:247-416
               
               
               Cow position:chr20:11864147-11864318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:247-454
               
               
               Cow position:chr20:38578776-38578976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):201, 69

               
               
               Conread position:247-458
               
               
               Cow position:chr20:14433443-14433653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:247-459
               
               
               Cow position:chr20:34918253-34918053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:247-473
               
               
               Cow position:chr20:11340815-11341044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:247-478
               
               
               Cow position:chr20:40127352-40127580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:247-521
               
               
               Cow position:chr20:25009656-25009927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:247-524
               
               
               Cow position:chr20:42469745-42469478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:247-618
               
               
               Cow position:chr20:19146858-19146484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 343

               
               
               Conread position:247-620
               
               
               Cow position:chr20:19410381-19410751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:247-624
               
               
               Cow position:chr20:6501788-6501411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:250-378
               
               
               Cow position:chr20:14917284-14917156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:250-448
               
               
               Cow position:chr20:14879767-14879572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 47

               
               
               Conread position:252-394
               
               
               Cow position:chr20:9701598-9701735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:252-623
               
               
               Cow position:chr20:13269605-13269238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 166

               
               
               Conread position:252-624
               
               
               Cow position:chr20:40423111-40423485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:254-444
               
               
               Cow position:chr20:35760646-35760461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:258-365
               
               
               Cow position:chr20:7362941-7362835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:258-380
               
               
               Cow position:chr20:40449984-40449861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:258-438
               
               
               Cow position:chr20:29754758-29754582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:258-452
               
               
               Cow position:chr20:5025332-5025520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:258-624
               
               
               Cow position:chr20:39417925-39418271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:260-379
               
               
               Cow position:chr20:30710674-30710795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:260-380
               
               
               Cow position:chr20:9730056-9729939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:260-535
               
               
               Cow position:chr20:13752210-13751945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:260-623
               
               
               Cow position:chr20:6258090-6258451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:264-617
               
               
               Cow position:chr20:25686382-25686725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):192, 158

               
               
               Conread position:264-623
               
               
               Cow position:chr20:4781532-4781172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 293

               
               
               Conread position:265-449
               
               
               Cow position:chr20:24902497-24902687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:268-620
               
               
               Cow position:chr20:5702711-5702362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:270-425
               
               
               Cow position:chr20:9923549-9923406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:215-495
               
               
               Cow position:chr21:40899378-40899096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:215-507
               
               
               Cow position:chr21:49699995-49700288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:215-624
               
               
               Cow position:chr21:1464273-1463864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 158

               
               
               Conread position:217-393
               
               
               Cow position:chr21:32830636-32830457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:217-546
               
               
               Cow position:chr21:2359928-2359601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:217-550
               
               
               Cow position:chr21:12960862-12961209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 201

               
               
               Conread position:217-584
               
               
               Cow position:chr21:20160717-20160355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:217-618
               
               
               Cow position:chr21:6764663-6765064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:217-625
               
               
               Cow position:chr21:27863477-27863890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:219-579
               
               
               Cow position:chr21:24888045-24887673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:220-380
               
               
               Cow position:chr21:949641-949794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:220-618
               
               
               Cow position:chr21:24222502-24222904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:221-624
               
               
               Cow position:chr21:33997194-33997594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:222-621
               
               
               Cow position:chr21:30231662-30232065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 256

               
               
               Conread position:223-392
               
               
               Cow position:chr21:20152987-20152810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:223-457
               
               
               Cow position:chr21:27521299-27521527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:223-551
               
               
               Cow position:chr21:26647978-26648298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:223-625
               
               
               Cow position:chr21:4281840-4282234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:223-625
               
               
               Cow position:chr21:20925473-20925875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:224-349
               
               
               Cow position:chr21:2260330-2260456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:224-437
               
               
               Cow position:chr21:46829244-46829451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):199, 16

               
               
               Conread position:224-456
               
               
               Cow position:chr21:21143933-21143680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:225-590
               
               
               Cow position:chr21:19196131-19196503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:226-454
               
               
               Cow position:chr21:13738592-13738372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:226-567
               
               
               Cow position:chr21:42024151-42023824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:226-619
               
               
               Cow position:chr21:17175178-17174783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:226-624
               
               
               Cow position:chr21:22718755-22719143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:227-393
               
               
               Cow position:chr21:11360066-11359899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:227-459
               
               
               Cow position:chr21:1059108-1058873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:227-471
               
               
               Cow position:chr21:30592278-30592514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:227-534
               
               
               Cow position:chr21:33563039-33562735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:227-569
               
               
               Cow position:chr21:13128069-13128410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:228-444
               
               
               Cow position:chr21:22353208-22353419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:228-454
               
               
               Cow position:chr21:17428525-17428305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:228-582
               
               
               Cow position:chr21:7132439-7132788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:229-358
               
               
               Cow position:chr21:10673153-10673024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:230-621
               
               
               Cow position:chr21:25764659-25764269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 193

               
               
               Conread position:235-622
               
               
               Cow position:chr21:45151604-45151998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:238-623
               
               
               Cow position:chr21:10514817-10514444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:239-398
               
               
               Cow position:chr21:7825165-7825319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:239-452
               
               
               Cow position:chr21:29002146-29002359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-537
               
               
               Cow position:chr21:39821793-39822092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:239-623
               
               
               Cow position:chr21:41957164-41957551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 120

               
               
               Conread position:239-624
               
               
               Cow position:chr21:30848936-30849306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:240-347
               
               
               Cow position:chr21:22465208-22465101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:240-444
               
               
               Cow position:chr21:14452247-14452041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):149, 105

               
               
               Conread position:240-455
               
               
               Cow position:chr21:31676510-31676298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:240-459
               
               
               Cow position:chr21:19083584-19083804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:240-468
               
               
               Cow position:chr21:13805606-13805377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:240-529
               
               
               Cow position:chr21:10967245-10966959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:240-546
               
               
               Cow position:chr21:5898388-5898684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 90

               
               
               Conread position:240-557
               
               
               Cow position:chr21:11227949-11228256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:242-343
               
               
               Cow position:chr21:45906612-45906713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr21:18041839-18041956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-362
               
               
               Cow position:chr21:35354542-35354422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr21:23980171-23980304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-377
               
               
               Cow position:chr21:22783965-22783829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-377
               
               
               Cow position:chr21:36789800-36789671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr21:27810417-27810279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-383
               
               
               Cow position:chr21:20192906-20192774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-390
               
               
               Cow position:chr21:20260312-20260456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-390
               
               
               Cow position:chr21:20418675-20418825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr21:29978751-29978899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:242-391
               
               
               Cow position:chr21:46166842-46166692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr21:12461961-12462109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr21:957681-957527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:242-395
               
               
               Cow position:chr21:11250888-11250725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr21:10561575-10561736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 133

               
               
               Conread position:242-411
               
               
               Cow position:chr21:31511295-31511137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr21:27624718-27624547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr21:28244478-28244309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr21:37345088-37345273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:242-428
               
               
               Cow position:chr21:10608443-10608629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:242-430
               
               
               Cow position:chr21:49662115-49662292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr21:2526121-2525930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-435
               
               
               Cow position:chr21:45375631-45375436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:242-437
               
               
               Cow position:chr21:13488531-13488337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr21:40664129-40663932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr21:47764106-47764301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr21:3763730-3763930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:242-449
               
               
               Cow position:chr21:1591561-1591357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 130

               
               
               Conread position:242-449
               
               
               Cow position:chr21:31253553-31253341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr21:35569372-35569580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:242-451
               
               
               Cow position:chr21:42135611-42135820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr21:18845006-18845212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):118, 145

               
               
               Conread position:242-452
               
               
               Cow position:chr21:45355845-45355639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):159, 100

               
               
               Conread position:242-452
               
               
               Cow position:chr21:46242228-46242436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:242-456
               
               
               Cow position:chr21:1558640-1558425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr21:41597830-41597614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr21:47066889-47067088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):161, 7

               
               
               Conread position:242-459
               
               
               Cow position:chr21:33730-33517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:242-479
               
               
               Cow position:chr21:28626249-28626017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-499
               
               
               Cow position:chr21:8235021-8235266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-503
               
               
               Cow position:chr21:5636709-5636969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr21:25281786-25282060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-532
               
               
               Cow position:chr21:36795609-36795323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 96

               
               
               Conread position:242-532
               
               
               Cow position:chr21:39888739-39889021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr21:30607080-30607384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 55

               
               
               Conread position:242-560
               
               
               Cow position:chr21:32237304-32236994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:242-565
               
               
               Cow position:chr21:40786687-40786361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:242-566
               
               
               Cow position:chr21:18850219-18850537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:242-570
               
               
               Cow position:chr21:6834059-6833737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:242-570
               
               
               Cow position:chr21:32395667-32395996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 262

               
               
               Conread position:242-573
               
               
               Cow position:chr21:40107975-40108303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 257

               
               
               Conread position:242-580
               
               
               Cow position:chr21:11644961-11645310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 82

               
               
               Conread position:242-583
               
               
               Cow position:chr21:38121108-38120775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 21

               
               
               Conread position:242-592
               
               
               Cow position:chr21:13048186-13048533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:242-598
               
               
               Cow position:chr21:16187800-16188152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 12

               
               
               Conread position:242-599
               
               
               Cow position:chr21:641595-641243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:242-615
               
               
               Cow position:chr21:17434309-17434680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:242-618
               
               
               Cow position:chr21:3236531-3236165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 55

               
               
               Conread position:242-619
               
               
               Cow position:chr21:29069320-29069690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr21:44515272-44514902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:242-620
               
               
               Cow position:chr21:38650912-38651286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-621
               
               
               Cow position:chr21:82088-81704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr21:19363453-19363816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:242-621
               
               
               Cow position:chr21:25383023-25382632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:242-621
               
               
               Cow position:chr21:30965599-30965978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chr21:33235812-33235432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-622
               
               
               Cow position:chr21:27607349-27607730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr21:2367343-2366973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr21:4795234-4794853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 16

               
               
               Conread position:242-623
               
               
               Cow position:chr21:16612633-16612261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr21:23683557-23683174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 111

               
               
               Conread position:242-623
               
               
               Cow position:chr21:28882144-28881781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 60

               
               
               Conread position:242-623
               
               
               Cow position:chr21:32297499-32297870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr21:724877-725257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 213

               
               
               Conread position:242-624
               
               
               Cow position:chr21:911958-912330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 103

               
               
               Conread position:242-624
               
               
               Cow position:chr21:4080368-4079985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 170

               
               
               Conread position:242-624
               
               
               Cow position:chr21:16696378-16696001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-624
               
               
               Cow position:chr21:18494978-18494611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr21:48484438-48484809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:242-625
               
               
               Cow position:chr21:4897639-4898020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 356

               
               
               Conread position:242-625
               
               
               Cow position:chr21:9209644-9209266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:242-625
               
               
               Cow position:chr21:10437183-10436800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:242-625
               
               
               Cow position:chr21:15584411-15584773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 55

               
               
               Conread position:242-625
               
               
               Cow position:chr21:21216134-21216511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr21:26629111-26628727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr21:28617598-28617232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:242-625
               
               
               Cow position:chr21:30570736-30571120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr21:34074981-34074597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-625
               
               
               Cow position:chr21:34390966-34391336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr21:34910205-34909822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-625
               
               
               Cow position:chr21:45841657-45842043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-390
               
               
               Cow position:chr21:17856550-17856408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:243-391
               
               
               Cow position:chr21:14515859-14515709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:243-437
               
               
               Cow position:chr21:40713152-40712956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-445
               
               
               Cow position:chr21:13365348-13365151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:243-451
               
               
               Cow position:chr21:21077334-21077133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):190, 139

               
               
               Conread position:243-459
               
               
               Cow position:chr21:29484987-29484780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:243-546
               
               
               Cow position:chr21:10727283-10726990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr21:33982798-33983178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 57

               
               
               Conread position:243-624
               
               
               Cow position:chr21:33210210-33209830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:244-446
               
               
               Cow position:chr21:32559354-32559545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:244-452
               
               
               Cow position:chr21:18828300-18828506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:244-454
               
               
               Cow position:chr21:22861006-22860803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:244-570
               
               
               Cow position:chr21:46264178-46263862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr21:4568291-4567920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):315, 41

               
               
               Conread position:244-625
               
               
               Cow position:chr21:23822174-23821801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:245-374
               
               
               Cow position:chr21:25628904-25629031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:245-430
               
               
               Cow position:chr21:18790553-18790731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-430
               
               
               Cow position:chr21:32339731-32339912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:245-446
               
               
               Cow position:chr21:5426947-5426755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:245-446
               
               
               Cow position:chr21:40065308-40065506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:245-447
               
               
               Cow position:chr21:33727459-33727653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 67

               
               
               Conread position:245-452
               
               
               Cow position:chr21:34835428-34835620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr21:6051513-6051302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-490
               
               
               Cow position:chr21:15445067-15445314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:245-532
               
               
               Cow position:chr21:43357252-43357538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:245-546
               
               
               Cow position:chr21:11640028-11639730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:245-565
               
               
               Cow position:chr21:395876-395568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:245-578
               
               
               Cow position:chr21:34010391-34010711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 57

               
               
               Conread position:245-623
               
               
               Cow position:chr21:9416254-9415875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 267

               
               
               Conread position:245-623
               
               
               Cow position:chr21:26829252-26829603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr21:28512535-28512173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr21:39401600-39401226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 100

               
               
               Conread position:245-623
               
               
               Cow position:chr21:40244446-40244066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr21:363656-363284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:245-624
               
               
               Cow position:chr21:4904960-4905337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 170

               
               
               Conread position:245-624
               
               
               Cow position:chr21:38867566-38867935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:245-624
               
               
               Cow position:chr21:45866938-45866570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:245-624
               
               
               Cow position:chr21:46973127-46973503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):182, 52

               
               
               Conread position:245-625
               
               
               Cow position:chr21:32535981-32535615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:246-413
               
               
               Cow position:chr21:13840330-13840164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:246-431
               
               
               Cow position:chr21:41198399-41198587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-468
               
               
               Cow position:chr21:13303824-13303606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:246-547
               
               
               Cow position:chr21:40058810-40058513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 105

               
               
               Conread position:246-565
               
               
               Cow position:chr21:41974370-41974689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-597
               
               
               Cow position:chr21:41579761-41579392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 172

               
               
               Conread position:246-624
               
               
               Cow position:chr21:7564312-7564691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:247-372
               
               
               Cow position:chr21:40168623-40168752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:247-453
               
               
               Cow position:chr21:3361009-3361212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-456
               
               
               Cow position:chr21:28443370-28443580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr21:8618281-8618070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:247-567
               
               
               Cow position:chr21:2785772-2786104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 207

               
               
               Conread position:247-605
               
               
               Cow position:chr21:5137480-5137857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:247-622
               
               
               Cow position:chr21:4189840-4189473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:247-624
               
               
               Cow position:chr21:36162956-36163331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-624
               
               
               Cow position:chr21:46912544-46912174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:248-443
               
               
               Cow position:chr21:40589481-40589671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:248-448
               
               
               Cow position:chr21:13163894-13163700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:249-427
               
               
               Cow position:chr21:27145987-27146164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:249-625
               
               
               Cow position:chr21:7716782-7717157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 222

               
               
               Conread position:250-623
               
               
               Cow position:chr21:18935762-18935404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 164

               
               
               Conread position:250-623
               
               
               Cow position:chr21:26244921-26244570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):163, 79

               
               
               Conread position:250-623
               
               
               Cow position:chr21:45473751-45474123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:251-622
               
               
               Cow position:chr21:48107862-48108220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:251-624
               
               
               Cow position:chr21:28442746-28442367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 98

               
               
               Conread position:252-435
               
               
               Cow position:chr21:17183922-17183741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:252-535
               
               
               Cow position:chr21:36793891-36793602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:252-558
               
               
               Cow position:chr21:24765289-24764964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:252-615
               
               
               Cow position:chr21:13751386-13751027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:252-615
               
               
               Cow position:chr21:35897634-35897981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 11

               
               
               Conread position:252-623
               
               
               Cow position:chr21:10151794-10151440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:252-625
               
               
               Cow position:chr21:27743746-27743371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:253-623
               
               
               Cow position:chr21:5566998-5566612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:254-625
               
               
               Cow position:chr21:25344869-25344506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:255-416
               
               
               Cow position:chr21:13713844-13714005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 132

               
               
               Conread position:255-574
               
               
               Cow position:chr21:17410660-17410977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 156

               
               
               Conread position:258-407
               
               
               Cow position:chr21:24642513-24642366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:258-412
               
               
               Cow position:chr21:18800536-18800686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:258-421
               
               
               Cow position:chr21:10001068-10000914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:258-456
               
               
               Cow position:chr21:34159956-34159759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:258-614
               
               
               Cow position:chr21:42190182-42190517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:258-623
               
               
               Cow position:chr21:17714310-17713945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:258-623
               
               
               Cow position:chr21:21968310-21967953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):344, 161

               
               
               Conread position:259-625
               
               
               Cow position:chr21:34659026-34658668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:264-477
               
               
               Cow position:chr21:24797674-24797473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:264-515
               
               
               Cow position:chr21:21223280-21223024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 159

               
               
               Conread position:264-517
               
               
               Cow position:chr21:44251848-44252090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):192, 59

               
               
               Conread position:264-617
               
               
               Cow position:chr21:30990283-30990628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:264-621
               
               
               Cow position:chr21:33263836-33263485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 81

               
               
               Conread position:264-623
               
               
               Cow position:chr21:19958213-19957863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:264-624
               
               
               Cow position:chr21:24607378-24607027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 308

               
               
               Conread position:264-624
               
               
               Cow position:chr21:31159250-31158886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 241

               
               
               Conread position:267-622
               
               
               Cow position:chr21:18932472-18932127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:270-458
               
               
               Cow position:chr21:13585088-13585261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:270-621
               
               
               Cow position:chr21:24131061-24130720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:271-565
               
               
               Cow position:chr21:43631219-43631502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:214-619
               
               
               Cow position:chr22:24734337-24734748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:216-420
               
               
               Cow position:chr22:1081476-1081273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:216-624
               
               
               Cow position:chr22:4974451-4974833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:217-621
               
               
               Cow position:chr22:4043901-4043505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:217-621
               
               
               Cow position:chr22:14882142-14882544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:221-459
               
               
               Cow position:chr22:14691002-14691248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:221-623
               
               
               Cow position:chr22:10919885-10920296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 263

               
               
               Conread position:222-620
               
               
               Cow position:chr22:41044944-41045357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:223-355
               
               
               Cow position:chr22:26969749-26969611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:223-621
               
               
               Cow position:chr22:8418433-8418039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:223-625
               
               
               Cow position:chr22:31870285-31870688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:224-329
               
               
               Cow position:chr22:40789530-40789424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:224-499
               
               
               Cow position:chr22:36560693-36560966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):17, 169

               
               
               Conread position:225-390
               
               
               Cow position:chr22:2945706-2945874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 117

               
               
               Conread position:225-624
               
               
               Cow position:chr22:7913443-7913048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:225-625
               
               
               Cow position:chr22:1326379-1325985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:225-625
               
               
               Cow position:chr22:25943439-25943048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:226-359
               
               
               Cow position:chr22:6097061-6097198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:226-423
               
               
               Cow position:chr22:10585743-10585936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:226-452
               
               
               Cow position:chr22:19775472-19775689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:226-579
               
               
               Cow position:chr22:10420993-10420618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:226-589
               
               
               Cow position:chr22:6092693-6093043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:226-590
               
               
               Cow position:chr22:23176478-23176861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:226-603
               
               
               Cow position:chr22:23806583-23806963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:226-622
               
               
               Cow position:chr22:38977804-38977414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):223, 39

               
               
               Conread position:226-624
               
               
               Cow position:chr22:36539701-36540111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:226-624
               
               
               Cow position:chr22:45513555-45513955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:226-625
               
               
               Cow position:chr22:3987480-3987075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 393

               
               
               Conread position:227-359
               
               
               Cow position:chr22:3367147-3367017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr22:10678029-10678187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:227-591
               
               
               Cow position:chr22:590299-589945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:227-621
               
               
               Cow position:chr22:6122940-6123318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:227-623
               
               
               Cow position:chr22:30954994-30954604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:227-624
               
               
               Cow position:chr22:15068388-15067976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:227-624
               
               
               Cow position:chr22:21567959-21567566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:228-441
               
               
               Cow position:chr22:6327810-6328018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:228-458
               
               
               Cow position:chr22:2216782-2216554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:228-587
               
               
               Cow position:chr22:29290180-29290535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:228-623
               
               
               Cow position:chr22:18259180-18258792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):347, 112

               
               
               Conread position:228-625
               
               
               Cow position:chr22:13735308-13735692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 95

               
               
               Conread position:228-625
               
               
               Cow position:chr22:31213537-31213135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 305

               
               
               Conread position:228-625
               
               
               Cow position:chr22:31646450-31646057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:231-621
               
               
               Cow position:chr22:31195030-31194641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 218

               
               
               Conread position:237-403
               
               
               Cow position:chr22:1727824-1727664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:238-459
               
               
               Cow position:chr22:3282987-3283203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:239-464
               
               
               Cow position:chr22:28640205-28640426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:239-617
               
               
               Cow position:chr22:30710342-30709975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:239-620
               
               
               Cow position:chr22:34597878-34597504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:239-625
               
               
               Cow position:chr22:22279263-22278876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-450
               
               
               Cow position:chr22:36761572-36761371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:240-460
               
               
               Cow position:chr22:37324489-37324275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-569
               
               
               Cow position:chr22:19787735-19788064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:240-582
               
               
               Cow position:chr22:22054362-22054023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:240-619
               
               
               Cow position:chr22:44741031-44740676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:240-621
               
               
               Cow position:chr22:28071501-28071125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:240-625
               
               
               Cow position:chr22:15538289-15537909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 155

               
               
               Conread position:241-384
               
               
               Cow position:chr22:18120422-18120566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:241-566
               
               
               Cow position:chr22:12573151-12572821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-376
               
               
               Cow position:chr22:1563310-1563442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-377
               
               
               Cow position:chr22:9283657-9283789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr22:2523904-2523766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr22:1849013-1848866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:242-389
               
               
               Cow position:chr22:7252700-7252849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:129
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr22:284742-284892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr22:3269534-3269682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr22:41898505-41898652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr22:982679-982527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr22:16647907-16647755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr22:20869779-20869626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:242-410
               
               
               Cow position:chr22:33917955-33918121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:242-412
               
               
               Cow position:chr22:5616250-5616075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:242-414
               
               
               Cow position:chr22:43119786-43119955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr22:12974447-12974621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr22:27825781-27825601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-433
               
               
               Cow position:chr22:28356981-28356790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-436
               
               
               Cow position:chr22:7851907-7851711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr22:26166678-26166865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):170, 103

               
               
               Conread position:242-438
               
               
               Cow position:chr22:27292037-27291851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):184, 103

               
               
               Conread position:242-444
               
               
               Cow position:chr22:26786296-26786097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr22:26658996-26658797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr22:23181098-23181294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr22:28665228-28665007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr22:45685083-45685294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 184

               
               
               Conread position:242-451
               
               
               Cow position:chr22:42612399-42612195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr22:44386464-44386661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr22:23854916-23854716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:242-455
               
               
               Cow position:chr22:6215617-6215821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr22:26141218-26141007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr22:4061004-4061207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr22:32895159-32894935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr22:6360547-6360758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr22:15090683-15090470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:242-458
               
               
               Cow position:chr22:28058110-28058311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:242-459
               
               
               Cow position:chr22:2623577-2623785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr22:4651123-4650910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:242-459
               
               
               Cow position:chr22:19848453-19848666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr22:40048495-40048292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:242-462
               
               
               Cow position:chr22:37201796-37201583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:242-468
               
               
               Cow position:chr22:37265781-37265554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:242-471
               
               
               Cow position:chr22:14638540-14638749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):215, 72

               
               
               Conread position:242-485
               
               
               Cow position:chr22:23575779-23575534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-485
               
               
               Cow position:chr22:23580241-23580486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-486
               
               
               Cow position:chr22:521344-521589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-493
               
               
               Cow position:chr22:8446881-8446626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 185

               
               
               Conread position:242-498
               
               
               Cow position:chr22:5290791-5290533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:242-508
               
               
               Cow position:chr22:11449281-11449548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr22:33485659-33485924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:242-511
               
               
               Cow position:chr22:14601446-14601198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:242-518
               
               
               Cow position:chr22:43397955-43397689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:242-525
               
               
               Cow position:chr22:45271524-45271241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 103

               
               
               Conread position:242-526
               
               
               Cow position:chr22:14143170-14143442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr22:28179797-28179496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:242-554
               
               
               Cow position:chr22:41982777-41983070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:242-554
               
               
               Cow position:chr22:47741362-47741052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:242-562
               
               
               Cow position:chr22:34712666-34712347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 135

               
               
               Conread position:242-570
               
               
               Cow position:chr22:12671641-12671969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:242-570
               
               
               Cow position:chr22:15532022-15531695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):64, 226

               
               
               Conread position:242-570
               
               
               Cow position:chr22:15558231-15558559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 212

               
               
               Conread position:242-572
               
               
               Cow position:chr22:25361428-25361116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-578
               
               
               Cow position:chr22:13861527-13861200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 22

               
               
               Conread position:242-579
               
               
               Cow position:chr22:9734796-9734467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 99

               
               
               Conread position:242-583
               
               
               Cow position:chr22:1975554-1975234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):332, 103

               
               
               Conread position:242-584
               
               
               Cow position:chr22:864575-864916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 115

               
               
               Conread position:242-591
               
               
               Cow position:chr22:10631326-10630972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:242-596
               
               
               Cow position:chr22:8481585-8481240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-598
               
               
               Cow position:chr22:11500723-11500371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:242-606
               
               
               Cow position:chr22:1067971-1068331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:242-610
               
               
               Cow position:chr22:4119622-4119990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:242-611
               
               
               Cow position:chr22:1907983-1907613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-612
               
               
               Cow position:chr22:34726616-34726250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:242-617
               
               
               Cow position:chr22:1342677-1342313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr22:11130810-11130447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:242-617
               
               
               Cow position:chr22:44717654-44717292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr22:20626781-20626414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 24

               
               
               Conread position:242-621
               
               
               Cow position:chr22:541306-540926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:912038-911675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:3960341-3960734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:13300353-13299996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:16044477-16044862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 174

               
               
               Conread position:242-621
               
               
               Cow position:chr22:17191725-17191345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:25743009-25743400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:242-621
               
               
               Cow position:chr22:30689575-30689200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr22:41271057-41271419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr22:41971218-41971586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 55

               
               
               Conread position:242-622
               
               
               Cow position:chr22:13011328-13011710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:242-623
               
               
               Cow position:chr22:1289574-1289941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr22:4645715-4645343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr22:10315016-10314660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr22:11613367-11612993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 155

               
               
               Conread position:242-623
               
               
               Cow position:chr22:11987272-11987648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr22:15039242-15039622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 12

               
               
               Conread position:242-623
               
               
               Cow position:chr22:21502684-21502302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:242-623
               
               
               Cow position:chr22:30515194-30514820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 103

               
               
               Conread position:242-624
               
               
               Cow position:chr22:877456-877087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:242-624
               
               
               Cow position:chr22:10532451-10532060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 187

               
               
               Conread position:242-624
               
               
               Cow position:chr22:11200978-11200620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr22:30472988-30472618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:242-624
               
               
               Cow position:chr22:33448139-33448522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:242-625
               
               
               Cow position:chr22:6622302-6622682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-625
               
               
               Cow position:chr22:8300321-8299937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr22:10685146-10685515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr22:11819760-11820139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:242-625
               
               
               Cow position:chr22:17294991-17295360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 53

               
               
               Conread position:242-625
               
               
               Cow position:chr22:17993090-17993467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr22:18031389-18031010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 168

               
               
               Conread position:242-625
               
               
               Cow position:chr22:19341149-19340763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 183

               
               
               Conread position:242-625
               
               
               Cow position:chr22:21330488-21330883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr22:22136159-22135775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr22:22160666-22160280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 181

               
               
               Conread position:242-625
               
               
               Cow position:chr22:25691078-25691454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr22:27305804-27306189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 215

               
               
               Conread position:242-625
               
               
               Cow position:chr22:30674568-30674950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 318

               
               
               Conread position:242-625
               
               
               Cow position:chr22:32487513-32487894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-625
               
               
               Cow position:chr22:34476060-34476438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:242-625
               
               
               Cow position:chr22:35933605-35933985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:242-625
               
               
               Cow position:chr22:39747662-39748051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:242-625
               
               
               Cow position:chr22:40365754-40366127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr22:42922913-42923296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:242-625
               
               
               Cow position:chr22:45366069-45365685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-390
               
               
               Cow position:chr22:10598339-10598195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:243-569
               
               
               Cow position:chr22:36569608-36569923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:243-570
               
               
               Cow position:chr22:9127347-9127012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 168

               
               
               Conread position:243-621
               
               
               Cow position:chr22:28370884-28370514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr22:26097679-26098043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr22:26151171-26151552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:243-625
               
               
               Cow position:chr22:35909319-35909699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:244-393
               
               
               Cow position:chr22:5675234-5675377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:244-474
               
               
               Cow position:chr22:33949059-33949289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 130

               
               
               Conread position:244-623
               
               
               Cow position:chr22:27171315-27171689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 111

               
               
               Conread position:244-625
               
               
               Cow position:chr22:1274217-1274599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr22:8644545-8644163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:244-625
               
               
               Cow position:chr22:14808413-14808041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:245-358
               
               
               Cow position:chr22:3945115-3945000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-359
               
               
               Cow position:chr22:32698703-32698585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-385
               
               
               Cow position:chr22:12315751-12315614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-386
               
               
               Cow position:chr22:12800605-12800465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:245-425
               
               
               Cow position:chr22:20687243-20687056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:245-429
               
               
               Cow position:chr22:4026545-4026367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:245-431
               
               
               Cow position:chr22:22146171-22145985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 175

               
               
               Conread position:245-453
               
               
               Cow position:chr22:1821934-1822138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:245-458
               
               
               Cow position:chr22:534439-534223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr22:4583497-4583300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:245-458
               
               
               Cow position:chr22:22997417-22997205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:245-498
               
               
               Cow position:chr22:8767282-8767038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:245-499
               
               
               Cow position:chr22:16251626-16251876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 85

               
               
               Conread position:245-504
               
               
               Cow position:chr22:59550-59303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:245-508
               
               
               Cow position:chr22:41245184-41244922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):178, 100

               
               
               Conread position:245-566
               
               
               Cow position:chr22:16621115-16620801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 90

               
               
               Conread position:245-622
               
               
               Cow position:chr22:46567949-46568320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:245-623
               
               
               Cow position:chr22:10339178-10339559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 5

               
               
               Conread position:245-624
               
               
               Cow position:chr22:8302913-8303285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:245-624
               
               
               Cow position:chr22:8412467-8412090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 302

               
               
               Conread position:245-625
               
               
               Cow position:chr22:3730698-3731076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:245-625
               
               
               Cow position:chr22:5282449-5282071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:245-625
               
               
               Cow position:chr22:7359663-7360044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-625
               
               
               Cow position:chr22:30483856-30483483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 220

               
               
               Conread position:245-625
               
               
               Cow position:chr22:30818787-30819161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 112

               
               
               Conread position:245-625
               
               
               Cow position:chr22:32709445-32709826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-425
               
               
               Cow position:chr22:36433031-36433207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):156, 77

               
               
               Conread position:246-450
               
               
               Cow position:chr22:6709842-6710037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:246-624
               
               
               Cow position:chr22:1279448-1279820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:247-380
               
               
               Cow position:chr22:12313361-12313227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-408
               
               
               Cow position:chr22:17339825-17339983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:247-429
               
               
               Cow position:chr22:5384588-5384414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-440
               
               
               Cow position:chr22:19376645-19376459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:247-446
               
               
               Cow position:chr22:19653048-19653239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:247-452
               
               
               Cow position:chr22:34750615-34750413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-458
               
               
               Cow position:chr22:2010738-2010528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:247-460
               
               
               Cow position:chr22:29013817-29013607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:247-479
               
               
               Cow position:chr22:38930570-38930805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-508
               
               
               Cow position:chr22:17764317-17764055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 112

               
               
               Conread position:247-516
               
               
               Cow position:chr22:22860972-22861239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:247-529
               
               
               Cow position:chr22:13670234-13670508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:247-611
               
               
               Cow position:chr22:38940011-38940369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:247-618
               
               
               Cow position:chr22:34665986-34665625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:247-621
               
               
               Cow position:chr22:11837270-11837635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 51

               
               
               Conread position:247-622
               
               
               Cow position:chr22:38549729-38549366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 56

               
               
               Conread position:247-623
               
               
               Cow position:chr22:32952413-32952026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):176, 55

               
               
               Conread position:247-624
               
               
               Cow position:chr22:14091284-14091664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 183

               
               
               Conread position:247-624
               
               
               Cow position:chr22:15919692-15920071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:247-624
               
               
               Cow position:chr22:39472439-39472812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:247-625
               
               
               Cow position:chr22:1710510-1710128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:248-443
               
               
               Cow position:chr22:21905429-21905239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:248-484
               
               
               Cow position:chr22:3950189-3949945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:248-623
               
               
               Cow position:chr22:17814163-17813802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:249-582
               
               
               Cow position:chr22:15292765-15293091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:249-592
               
               
               Cow position:chr22:32661444-32661113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:249-620
               
               
               Cow position:chr22:11370652-11371007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:249-621
               
               
               Cow position:chr22:28290019-28289652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:249-621
               
               
               Cow position:chr22:34930809-34931186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 329

               
               
               Conread position:250-459
               
               
               Cow position:chr22:26339690-26339488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 95

               
               
               Conread position:250-463
               
               
               Cow position:chr22:2105318-2105530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):56, 199

               
               
               Conread position:251-592
               
               
               Cow position:chr22:4563293-4562943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 69

               
               
               Conread position:251-625
               
               
               Cow position:chr22:15959835-15960205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:252-452
               
               
               Cow position:chr22:25341953-25341756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:252-621
               
               
               Cow position:chr22:14006084-14005724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:252-625
               
               
               Cow position:chr22:25658602-25658972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:254-429
               
               
               Cow position:chr22:7164891-7164712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:255-392
               
               
               Cow position:chr22:30998826-30998693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:257-624
               
               
               Cow position:chr22:32480552-32480900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 106

               
               
               Conread position:258-524
               
               
               Cow position:chr22:40071907-40071633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:258-602
               
               
               Cow position:chr22:1791916-1791579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 72

               
               
               Conread position:258-621
               
               
               Cow position:chr22:11489459-11489110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 79

               
               
               Conread position:258-624
               
               
               Cow position:chr22:27818928-27818564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:258-625
               
               
               Cow position:chr22:4075963-4076327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 171

               
               
               Conread position:259-620
               
               
               Cow position:chr22:1266003-1266371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 164

               
               
               Conread position:259-624
               
               
               Cow position:chr22:22022817-22022450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:260-452
               
               
               Cow position:chr22:22613035-22612847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):168, 60

               
               
               Conread position:260-456
               
               
               Cow position:chr22:29642039-29641841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:260-468
               
               
               Cow position:chr22:21408140-21407927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:260-526
               
               
               Cow position:chr22:47927682-47927425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:263-424
               
               
               Cow position:chr22:34986185-34986338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:264-407
               
               
               Cow position:chr22:6149461-6149605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:264-469
               
               
               Cow position:chr22:19714844-19714645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:264-589
               
               
               Cow position:chr22:28937978-28938309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:264-625
               
               
               Cow position:chr22:36193774-36193432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:265-448
               
               
               Cow position:chr22:41417214-41417399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:265-516
               
               
               Cow position:chr22:23249788-23250037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 152

               
               
               Conread position:266-440
               
               
               Cow position:chr22:10323821-10323654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:266-617
               
               
               Cow position:chr22:10161883-10161537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:266-621
               
               
               Cow position:chr22:8357532-8357181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:266-621
               
               
               Cow position:chr22:43743415-43743737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:268-621
               
               
               Cow position:chr22:8732641-8732994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:269-432
               
               
               Cow position:chr22:41980163-41980326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-456
               
               
               Cow position:chr22:9278813-9278635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:269-620
               
               
               Cow position:chr22:33985847-33986196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:270-435
               
               
               Cow position:chr22:47582823-47582659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:140
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:270-498
               
               
               Cow position:chr22:40387074-40386854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:270-621
               
               
               Cow position:chr22:21012304-21011960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:270-623
               
               
               Cow position:chr22:13016875-13017216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:271-493
               
               
               Cow position:chr22:41829317-41829548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):126, 58

               
               
               Conread position:207-621
               
               
               Cow position:chr23:406185-406584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:215-459
               
               
               Cow position:chr23:25358707-25358465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:216-448
               
               
               Cow position:chr23:809146-808907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:217-448
               
               
               Cow position:chr23:38854759-38854989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:217-449
               
               
               Cow position:chr23:29345784-29346015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:217-562
               
               
               Cow position:chr23:38455204-38455553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:217-625
               
               
               Cow position:chr23:40825969-40825562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:218-508
               
               
               Cow position:chr23:21446096-21445792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:221-445
               
               
               Cow position:chr23:33940187-33940408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):182, 81

               
               
               Conread position:223-459
               
               
               Cow position:chr23:29242920-29242676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:223-508
               
               
               Cow position:chr23:39309153-39309429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:224-390
               
               
               Cow position:chr23:1942699-1942524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-468
               
               
               Cow position:chr23:3262525-3262774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:224-492
               
               
               Cow position:chr23:4726758-4726503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:224-532
               
               
               Cow position:chr23:29175950-29175650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:225-563
               
               
               Cow position:chr23:14164431-14164773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:226-404
               
               
               Cow position:chr23:22399368-22399190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:226-406
               
               
               Cow position:chr23:4523010-4523192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:226-543
               
               
               Cow position:chr23:40781292-40780978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:226-570
               
               
               Cow position:chr23:14739412-14739076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:226-612
               
               
               Cow position:chr23:21336518-21336909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:227-624
               
               
               Cow position:chr23:2179680-2180083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:228-484
               
               
               Cow position:chr23:1690754-1690497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:228-616
               
               
               Cow position:chr23:3208654-3209039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:228-624
               
               
               Cow position:chr23:22530449-22530832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 199

               
               
               Conread position:229-402
               
               
               Cow position:chr23:1776668-1776840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:236-441
               
               
               Cow position:chr23:41348692-41348896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:239-455
               
               
               Cow position:chr23:21452781-21452995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:240-459
               
               
               Cow position:chr23:4562833-4562615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:241-362
               
               
               Cow position:chr23:27029879-27029757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:241-450
               
               
               Cow position:chr23:32105819-32105617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 83

               
               
               Conread position:241-602
               
               
               Cow position:chr23:5870231-5870596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:242-332
               
               
               Cow position:chr23:12363671-12363761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:79
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-332
               
               
               Cow position:chr23:24809718-24809807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-333
               
               
               Cow position:chr23:17404786-17404695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-341
               
               
               Cow position:chr23:21502692-21502789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-352
               
               
               Cow position:chr23:19774721-19774611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-357
               
               
               Cow position:chr23:7361064-7360950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr23:2488038-2488172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr23:30030988-30031133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr23:18296756-18296595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:242-412
               
               
               Cow position:chr23:1489998-1489837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr23:15743039-15742865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr23:27544776-27544595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-433
               
               
               Cow position:chr23:25378602-25378415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-442
               
               
               Cow position:chr23:3140811-3140615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr23:10999041-10999246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 129

               
               
               Conread position:242-447
               
               
               Cow position:chr23:2282227-2282428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:242-447
               
               
               Cow position:chr23:4810701-4810496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:242-448
               
               
               Cow position:chr23:16881215-16881412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr23:26632750-26632545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr23:16582961-16583166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:242-458
               
               
               Cow position:chr23:11380305-11380523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr23:11045433-11045216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 92

               
               
               Conread position:242-459
               
               
               Cow position:chr23:21343303-21343512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr23:33711709-33711505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):212, 103

               
               
               Conread position:242-471
               
               
               Cow position:chr23:1605624-1605401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr23:33232962-33233183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 60

               
               
               Conread position:242-478
               
               
               Cow position:chr23:38208673-38208428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:242-494
               
               
               Cow position:chr23:1883340-1883092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:242-499
               
               
               Cow position:chr23:3247532-3247285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-503
               
               
               Cow position:chr23:16563788-16563533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-514
               
               
               Cow position:chr23:4531622-4531899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-524
               
               
               Cow position:chr23:19947804-19948086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):64, 235

               
               
               Conread position:242-528
               
               
               Cow position:chr23:27378428-27378141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-533
               
               
               Cow position:chr23:1337353-1337654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:242-533
               
               
               Cow position:chr23:37065790-37065501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 221

               
               
               Conread position:242-543
               
               
               Cow position:chr23:11965158-11965460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:242-546
               
               
               Cow position:chr23:30334180-30334482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:242-553
               
               
               Cow position:chr23:7402649-7402346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-561
               
               
               Cow position:chr23:24509649-24509335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:242-587
               
               
               Cow position:chr23:40778214-40777869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-593
               
               
               Cow position:chr23:3322132-3321780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-607
               
               
               Cow position:chr23:2501907-2502277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 12

               
               
               Conread position:242-615
               
               
               Cow position:chr23:18322468-18322841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 182

               
               
               Conread position:242-615
               
               
               Cow position:chr23:32961418-32961805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:242-619
               
               
               Cow position:chr23:14191500-14191125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 181

               
               
               Conread position:242-620
               
               
               Cow position:chr23:344227-344602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr23:360968-361344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 84

               
               
               Conread position:242-620
               
               
               Cow position:chr23:11473561-11473932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 40

               
               
               Conread position:242-621
               
               
               Cow position:chr23:222016-221647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr23:3286910-3286529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr23:8308371-8308751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chr23:19056203-19056578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-622
               
               
               Cow position:chr23:1700855-1700494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr23:9268540-9268159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 181

               
               
               Conread position:242-623
               
               
               Cow position:chr23:13599292-13598924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr23:22804673-22804299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:242-624
               
               
               Cow position:chr23:1721036-1721433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:242-624
               
               
               Cow position:chr23:3727448-3727829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 184

               
               
               Conread position:242-624
               
               
               Cow position:chr23:6592752-6593147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:242-624
               
               
               Cow position:chr23:15710125-15710510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:242-624
               
               
               Cow position:chr23:16495119-16495500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-624
               
               
               Cow position:chr23:26986325-26986712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 14

               
               
               Conread position:242-624
               
               
               Cow position:chr23:39806814-39806433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:242-625
               
               
               Cow position:chr23:573097-573487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr23:2369933-2369561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 49

               
               
               Conread position:242-625
               
               
               Cow position:chr23:3717329-3716942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr23:4855683-4856068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr23:10852999-10852623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:242-625
               
               
               Cow position:chr23:12864851-12864468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:242-625
               
               
               Cow position:chr23:13520398-13520026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:242-625
               
               
               Cow position:chr23:14266476-14266099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr23:21771744-21772128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr23:27403292-27402914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:242-625
               
               
               Cow position:chr23:29626362-29625998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 107

               
               
               Conread position:242-625
               
               
               Cow position:chr23:32052546-32052160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 185

               
               
               Conread position:242-625
               
               
               Cow position:chr23:35284356-35284740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 223

               
               
               Conread position:242-625
               
               
               Cow position:chr23:38934073-38934453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 60

               
               
               Conread position:243-416
               
               
               Cow position:chr23:20557899-20558082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:243-453
               
               
               Cow position:chr23:29034263-29034053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-497
               
               
               Cow position:chr23:29459144-29459398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 43

               
               
               Conread position:243-590
               
               
               Cow position:chr23:24867252-24866909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:243-593
               
               
               Cow position:chr23:34416510-34416171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:243-623
               
               
               Cow position:chr23:534174-533796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 52

               
               
               Conread position:243-623
               
               
               Cow position:chr23:1290240-1289872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 20

               
               
               Conread position:243-625
               
               
               Cow position:chr23:4437769-4437388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 200

               
               
               Conread position:244-390
               
               
               Cow position:chr23:21764863-21764720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:244-391
               
               
               Cow position:chr23:5451270-5451123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr23:27735373-27734993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:245-362
               
               
               Cow position:chr23:12334151-12334037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:245-384
               
               
               Cow position:chr23:19371126-19371262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 100

               
               
               Conread position:245-440
               
               
               Cow position:chr23:13359757-13359573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:245-458
               
               
               Cow position:chr23:19538051-19538259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:245-565
               
               
               Cow position:chr23:33601583-33601892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-570
               
               
               Cow position:chr23:16700094-16700396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:245-614
               
               
               Cow position:chr23:7175563-7175202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:245-618
               
               
               Cow position:chr23:10014483-10014121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 136

               
               
               Conread position:245-621
               
               
               Cow position:chr23:15056698-15057055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 96

               
               
               Conread position:245-623
               
               
               Cow position:chr23:7596387-7596759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:245-623
               
               
               Cow position:chr23:10554064-10554441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr23:1647563-1647189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 87

               
               
               Conread position:245-624
               
               
               Cow position:chr23:36309365-36308986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 98

               
               
               Conread position:246-386
               
               
               Cow position:chr23:33570079-33569942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:246-543
               
               
               Cow position:chr23:9734358-9734069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:246-582
               
               
               Cow position:chr23:37992934-37992607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:246-623
               
               
               Cow position:chr23:7845236-7844860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 206

               
               
               Conread position:247-352
               
               
               Cow position:chr23:22350603-22350498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-395
               
               
               Cow position:chr23:30585719-30585864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-427
               
               
               Cow position:chr23:11081018-11080847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:247-463
               
               
               Cow position:chr23:187120-186901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:247-491
               
               
               Cow position:chr23:31601509-31601756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-527
               
               
               Cow position:chr23:4528940-4529226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-606
               
               
               Cow position:chr23:19758681-19759044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):190, 86

               
               
               Conread position:247-624
               
               
               Cow position:chr23:18802329-18802704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:249-623
               
               
               Cow position:chr23:1428752-1428372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 96

               
               
               Conread position:251-623
               
               
               Cow position:chr23:1536264-1535892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:252-536
               
               
               Cow position:chr23:29824124-29824407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:253-424
               
               
               Cow position:chr23:24704218-24704048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:254-411
               
               
               Cow position:chr23:1068377-1068531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:254-623
               
               
               Cow position:chr23:5151916-5151549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 39

               
               
               Conread position:257-416
               
               
               Cow position:chr23:7485010-7484856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:258-427
               
               
               Cow position:chr23:35254307-35254472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 72

               
               
               Conread position:259-459
               
               
               Cow position:chr23:9599426-9599234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):186, 91

               
               
               Conread position:260-393
               
               
               Cow position:chr23:36018078-36017942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-614
               
               
               Cow position:chr23:28118170-28118519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:264-395
               
               
               Cow position:chr23:29786422-29786555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:264-623
               
               
               Cow position:chr23:26841365-26841014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):140, 28

               
               
               Conread position:268-456
               
               
               Cow position:chr23:4338682-4338869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:274-532
               
               
               Cow position:chr23:39778321-39778077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:214-446
               
               
               Cow position:chr24:27748601-27748375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:215-619
               
               
               Cow position:chr24:16625535-16625949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:216-625
               
               
               Cow position:chr24:27906390-27905970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:218-452
               
               
               Cow position:chr24:40184576-40184338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:219-495
               
               
               Cow position:chr24:18734406-18734688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:219-602
               
               
               Cow position:chr24:40974944-40974554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):228, 111

               
               
               Conread position:220-460
               
               
               Cow position:chr24:29389190-29388957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:221-437
               
               
               Cow position:chr24:16994829-16994624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:222-546
               
               
               Cow position:chr24:18405374-18405683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:223-451
               
               
               Cow position:chr24:5152178-5151950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:223-534
               
               
               Cow position:chr24:6102770-6102442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:223-567
               
               
               Cow position:chr24:41985934-41985566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:224-456
               
               
               Cow position:chr24:17860317-17860540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:224-624
               
               
               Cow position:chr24:201699-202090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:226-410
               
               
               Cow position:chr24:24457307-24457491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:226-481
               
               
               Cow position:chr24:15861658-15861911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:226-508
               
               
               Cow position:chr24:34272751-34272461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:226-621
               
               
               Cow position:chr24:17104630-17105017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:226-623
               
               
               Cow position:chr24:24136917-24137308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:226-625
               
               
               Cow position:chr24:27290811-27290418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:227-372
               
               
               Cow position:chr24:28253644-28253501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:239-621
               
               
               Cow position:chr24:35794110-35793725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:240-469
               
               
               Cow position:chr24:10671317-10671084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 222

               
               
               Conread position:240-624
               
               
               Cow position:chr24:27149319-27148950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:241-619
               
               
               Cow position:chr24:29595888-29596258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 176

               
               
               Conread position:241-623
               
               
               Cow position:chr24:33098567-33098949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:242-339
               
               
               Cow position:chr24:37037818-37037723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr24:32070888-32070786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr24:352684-352800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-360
               
               
               Cow position:chr24:30897617-30897735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr24:28990483-28990360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:242-382
               
               
               Cow position:chr24:6131954-6132093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:242-386
               
               
               Cow position:chr24:39833591-39833735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr24:29539986-29540133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr24:40649774-40649624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr24:31388453-31388308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr24:37865156-37865003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr24:33222021-33222178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-415
               
               
               Cow position:chr24:2095969-2096137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr24:18474824-18474998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr24:20514502-20514688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr24:21860302-21860483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:242-444
               
               
               Cow position:chr24:30314108-30314313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-444
               
               
               Cow position:chr24:36404223-36404424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr24:27941088-27941291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr24:25885240-25885442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 78

               
               
               Conread position:242-452
               
               
               Cow position:chr24:18397690-18397901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-453
               
               
               Cow position:chr24:35074014-35073806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:242-455
               
               
               Cow position:chr24:18324543-18324328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 208

               
               
               Conread position:242-457
               
               
               Cow position:chr24:591835-591620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:242-459
               
               
               Cow position:chr24:18975122-18974909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-463
               
               
               Cow position:chr24:40850085-40849868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:242-480
               
               
               Cow position:chr24:6913844-6914074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:242-481
               
               
               Cow position:chr24:30178156-30177922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:242-484
               
               
               Cow position:chr24:39841928-39842166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:242-486
               
               
               Cow position:chr24:29782085-29781843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:242-487
               
               
               Cow position:chr24:27341100-27341344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-502
               
               
               Cow position:chr24:27465656-27465900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):181, 96

               
               
               Conread position:242-507
               
               
               Cow position:chr24:38347606-38347339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:242-520
               
               
               Cow position:chr24:3214677-3214404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-520
               
               
               Cow position:chr24:28332350-28332631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 150

               
               
               Conread position:242-520
               
               
               Cow position:chr24:33723925-33724218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:242-525
               
               
               Cow position:chr24:26384731-26385015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:242-528
               
               
               Cow position:chr24:6922031-6921744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-532
               
               
               Cow position:chr24:38684180-38684468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:242-535
               
               
               Cow position:chr24:25320917-25320624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 157

               
               
               Conread position:242-536
               
               
               Cow position:chr24:20874601-20874311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr24:37650592-37650310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:242-546
               
               
               Cow position:chr24:15874704-15875009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-546
               
               
               Cow position:chr24:33153697-33153409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:242-546
               
               
               Cow position:chr24:40346588-40346882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:242-547
               
               
               Cow position:chr24:27543555-27543856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-555
               
               
               Cow position:chr24:43384680-43384366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-556
               
               
               Cow position:chr24:29027965-29027663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 103

               
               
               Conread position:242-561
               
               
               Cow position:chr24:6091243-6090923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-561
               
               
               Cow position:chr24:44041090-44041400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-563
               
               
               Cow position:chr24:2402447-2402773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:242-569
               
               
               Cow position:chr24:43364280-43363961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:242-582
               
               
               Cow position:chr24:41006773-41006434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-593
               
               
               Cow position:chr24:211906-211555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-599
               
               
               Cow position:chr24:35675466-35675127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-616
               
               
               Cow position:chr24:29063733-29064092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:242-617
               
               
               Cow position:chr24:15473282-15472902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 206

               
               
               Conread position:242-617
               
               
               Cow position:chr24:28721812-28721431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 108

               
               
               Conread position:242-618
               
               
               Cow position:chr24:27052573-27052942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:242-621
               
               
               Cow position:chr24:3152659-3153039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:242-621
               
               
               Cow position:chr24:18113713-18113333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-623
               
               
               Cow position:chr24:24250649-24250268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr24:25677959-25677571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:242-623
               
               
               Cow position:chr24:32204873-32205259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 91

               
               
               Conread position:242-624
               
               
               Cow position:chr24:14125017-14124633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:242-624
               
               
               Cow position:chr24:14531281-14530907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:242-624
               
               
               Cow position:chr24:15881342-15880960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:242-624
               
               
               Cow position:chr24:27810108-27809722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr24:28062873-28062490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 243

               
               
               Conread position:242-624
               
               
               Cow position:chr24:39440633-39441014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-625
               
               
               Cow position:chr24:6436716-6436335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr24:12293950-12293566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr24:14249326-14249710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr24:17160721-17161105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr24:20368820-20368434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 235

               
               
               Conread position:242-625
               
               
               Cow position:chr24:20605006-20604622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr24:25709767-25710166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr24:29072742-29073135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 143

               
               
               Conread position:242-625
               
               
               Cow position:chr24:31066802-31067182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr24:32360600-32360985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:242-625
               
               
               Cow position:chr24:36780665-36780289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:242-625
               
               
               Cow position:chr24:39218919-39219300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:243-362
               
               
               Cow position:chr24:27202517-27202397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:243-384
               
               
               Cow position:chr24:33380077-33379938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:243-390
               
               
               Cow position:chr24:31359244-31359099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:243-447
               
               
               Cow position:chr24:21523024-21522819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:243-508
               
               
               Cow position:chr24:3430653-3430381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):205, 74

               
               
               Conread position:243-508
               
               
               Cow position:chr24:5754756-5754500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:243-598
               
               
               Cow position:chr24:29180808-29180470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:243-615
               
               
               Cow position:chr24:31812107-31811739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:243-621
               
               
               Cow position:chr24:36027258-36027638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:243-625
               
               
               Cow position:chr24:193339-192959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:244-451
               
               
               Cow position:chr24:43371166-43370963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):200, 83

               
               
               Conread position:244-612
               
               
               Cow position:chr24:17720173-17720535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr24:18374697-18374339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 188

               
               
               Conread position:244-625
               
               
               Cow position:chr24:39066608-39066990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 305

               
               
               Conread position:245-392
               
               
               Cow position:chr24:18328778-18328921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr24:10841294-10841442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:245-406
               
               
               Cow position:chr24:34008658-34008821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:245-442
               
               
               Cow position:chr24:41755781-41755591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:245-444
               
               
               Cow position:chr24:30544941-30545133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr24:17294273-17294479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:245-494
               
               
               Cow position:chr24:42007658-42007419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:245-520
               
               
               Cow position:chr24:27267552-27267285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:245-604
               
               
               Cow position:chr24:3631427-3631080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:245-609
               
               
               Cow position:chr24:7917444-7917810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 181

               
               
               Conread position:245-616
               
               
               Cow position:chr24:18485079-18485448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:245-619
               
               
               Cow position:chr24:11007138-11006761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr24:16556721-16557108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:245-623
               
               
               Cow position:chr24:17955523-17955906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 195

               
               
               Conread position:245-623
               
               
               Cow position:chr24:43432711-43432323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:246-436
               
               
               Cow position:chr24:41980744-41980931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:246-440
               
               
               Cow position:chr24:23442670-23442854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:246-441
               
               
               Cow position:chr24:18390371-18390562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:246-591
               
               
               Cow position:chr24:37246294-37246642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:246-606
               
               
               Cow position:chr24:21264591-21264945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:246-606
               
               
               Cow position:chr24:40130044-40129674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:246-621
               
               
               Cow position:chr24:27874519-27874152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:246-624
               
               
               Cow position:chr24:2730652-2731036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:247-371
               
               
               Cow position:chr24:39143527-39143400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-398
               
               
               Cow position:chr24:20249981-20250135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-403
               
               
               Cow position:chr24:18343968-18343812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-406
               
               
               Cow position:chr24:29707881-29708045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:247-420
               
               
               Cow position:chr24:27207278-27207448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:247-449
               
               
               Cow position:chr24:7913920-7913716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-472
               
               
               Cow position:chr24:42345086-42345313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):55, 199

               
               
               Conread position:247-476
               
               
               Cow position:chr24:44809165-44808936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:247-479
               
               
               Cow position:chr24:35332637-35332407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:247-494
               
               
               Cow position:chr24:40908938-40908689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:247-621
               
               
               Cow position:chr24:17309200-17309555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:247-621
               
               
               Cow position:chr24:18732205-18732567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:247-624
               
               
               Cow position:chr24:20024532-20024155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 307

               
               
               Conread position:247-624
               
               
               Cow position:chr24:39493211-39492846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:250-393
               
               
               Cow position:chr24:28327171-28327309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:250-452
               
               
               Cow position:chr24:34742667-34742464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:250-455
               
               
               Cow position:chr24:35794823-35795028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-366
               
               
               Cow position:chr24:22647426-22647545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:252-471
               
               
               Cow position:chr24:28600703-28600917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:252-474
               
               
               Cow position:chr24:31159528-31159319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):174, 81

               
               
               Conread position:252-572
               
               
               Cow position:chr24:2675233-2674927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 65

               
               
               Conread position:252-624
               
               
               Cow position:chr24:22193641-22193269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:256-621
               
               
               Cow position:chr24:43635344-43634978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 15

               
               
               Conread position:257-395
               
               
               Cow position:chr24:18771282-18771415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:258-374
               
               
               Cow position:chr24:16089141-16089025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-457
               
               
               Cow position:chr24:1269703-1269514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:258-529
               
               
               Cow position:chr24:634890-634628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:258-621
               
               
               Cow position:chr24:27719850-27720201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:260-497
               
               
               Cow position:chr24:34315257-34315029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:264-504
               
               
               Cow position:chr24:28319301-28319543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 92

               
               
               Conread position:264-621
               
               
               Cow position:chr24:17363748-17364105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:266-456
               
               
               Cow position:chr24:31816485-31816296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:266-622
               
               
               Cow position:chr24:814368-814717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:268-622
               
               
               Cow position:chr24:32124743-32125083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:270-621
               
               
               Cow position:chr24:28303460-28303804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 40

               
               
               Conread position:271-542
               
               
               Cow position:chr24:23556435-23556703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:201-459
               
               
               Cow position:chr25:17701986-17702233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:216-624
               
               
               Cow position:chr25:26654884-26654473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:217-457
               
               
               Cow position:chr25:28187973-28188216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:217-601
               
               
               Cow position:chr25:30319470-30319860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:221-393
               
               
               Cow position:chr25:17704713-17704545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:222-396
               
               
               Cow position:chr25:16714302-16714481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:223-624
               
               
               Cow position:chr25:21951090-21950692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:224-625
               
               
               Cow position:chr25:17598527-17598929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 295

               
               
               Conread position:226-417
               
               
               Cow position:chr25:36017500-36017311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:226-430
               
               
               Cow position:chr25:15377288-15377092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:226-458
               
               
               Cow position:chr25:35612346-35612570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):188, 37

               
               
               Conread position:226-486
               
               
               Cow position:chr25:21894922-21895184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:226-498
               
               
               Cow position:chr25:10365788-10366060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:226-603
               
               
               Cow position:chr25:20069687-20069313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 201

               
               
               Conread position:226-623
               
               
               Cow position:chr25:1735352-1735750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:226-625
               
               
               Cow position:chr25:13569206-13569609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:228-349
               
               
               Cow position:chr25:30064926-30065044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:239-378
               
               
               Cow position:chr25:18905832-18905692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-388
               
               
               Cow position:chr25:13672339-13672189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-419
               
               
               Cow position:chr25:2596131-2595947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:240-555
               
               
               Cow position:chr25:7386695-7386394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):66, 225

               
               
               Conread position:241-459
               
               
               Cow position:chr25:6238076-6237853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 72

               
               
               Conread position:241-622
               
               
               Cow position:chr25:40658246-40657867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:241-625
               
               
               Cow position:chr25:26757381-26756996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 40

               
               
               Conread position:242-335
               
               
               Cow position:chr25:21668189-21668096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-348
               
               
               Cow position:chr25:26679171-26679065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-350
               
               
               Cow position:chr25:41151018-41151125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-361
               
               
               Cow position:chr25:27532728-27532849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr25:3982985-3982853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr25:17342399-17342258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr25:35110182-35110321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr25:12899700-12899537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:242-415
               
               
               Cow position:chr25:25861414-25861586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr25:6961211-6961377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr25:36033381-36033209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr25:6255992-6256170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:242-428
               
               
               Cow position:chr25:7329490-7329305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr25:13303148-13302951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr25:20211138-20211335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:242-441
               
               
               Cow position:chr25:24669493-24669682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr25:8560807-8560616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:242-447
               
               
               Cow position:chr25:16001581-16001779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):181, 93

               
               
               Conread position:242-448
               
               
               Cow position:chr25:19129797-19129594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):8, 112

               
               
               Conread position:242-451
               
               
               Cow position:chr25:33550451-33550244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr25:11131524-11131322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr25:20785642-20785850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr25:35333102-35332904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 108

               
               
               Conread position:242-462
               
               
               Cow position:chr25:36535493-36535705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:242-469
               
               
               Cow position:chr25:12195384-12195605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-499
               
               
               Cow position:chr25:12817319-12817063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:242-509
               
               
               Cow position:chr25:25051437-25051704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:242-520
               
               
               Cow position:chr25:36036838-36037121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 8

               
               
               Conread position:242-524
               
               
               Cow position:chr25:9957096-9957369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:242-541
               
               
               Cow position:chr25:9847732-9847435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):64, 241

               
               
               Conread position:242-543
               
               
               Cow position:chr25:18155543-18155242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:242-543
               
               
               Cow position:chr25:23351342-23351042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:242-564
               
               
               Cow position:chr25:36554948-36554630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-580
               
               
               Cow position:chr25:21192991-21193334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:242-581
               
               
               Cow position:chr25:4547774-4548113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 5

               
               
               Conread position:242-582
               
               
               Cow position:chr25:31732790-31733125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-585
               
               
               Cow position:chr25:5341596-5341255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:242-601
               
               
               Cow position:chr25:32191612-32191254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 24

               
               
               Conread position:242-611
               
               
               Cow position:chr25:18564433-18564070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:242-618
               
               
               Cow position:chr25:7216773-7216393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:242-621
               
               
               Cow position:chr25:8120725-8120345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 183

               
               
               Conread position:242-623
               
               
               Cow position:chr25:2136297-2135931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:242-623
               
               
               Cow position:chr25:7641511-7641881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr25:35607779-35608160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 26

               
               
               Conread position:242-624
               
               
               Cow position:chr25:2046615-2046986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:242-624
               
               
               Cow position:chr25:9415076-9414693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr25:12824076-12824463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:242-625
               
               
               Cow position:chr25:3141254-3140870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr25:13966716-13967099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 322

               
               
               Conread position:242-625
               
               
               Cow position:chr25:19339760-19339377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:242-625
               
               
               Cow position:chr25:20076436-20076056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:242-625
               
               
               Cow position:chr25:20395135-20394763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 44

               
               
               Conread position:242-625
               
               
               Cow position:chr25:26618401-26618017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 304

               
               
               Conread position:243-471
               
               
               Cow position:chr25:20023447-20023681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:243-503
               
               
               Cow position:chr25:8347451-8347195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:243-623
               
               
               Cow position:chr25:26238813-26238439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 102

               
               
               Conread position:243-623
               
               
               Cow position:chr25:41384137-41384487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr25:14954079-14954460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 146

               
               
               Conread position:243-625
               
               
               Cow position:chr25:18448782-18448393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 59

               
               
               Conread position:244-404
               
               
               Cow position:chr25:12319406-12319553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:244-618
               
               
               Cow position:chr25:7801080-7800707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 34

               
               
               Conread position:244-625
               
               
               Cow position:chr25:37637712-37638087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:245-384
               
               
               Cow position:chr25:20133372-20133510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:245-442
               
               
               Cow position:chr25:4002741-4002543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:245-458
               
               
               Cow position:chr25:13642371-13642585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:245-459
               
               
               Cow position:chr25:14196800-14196585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr25:17712477-17712264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:245-463
               
               
               Cow position:chr25:36081817-36081601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:245-485
               
               
               Cow position:chr25:6474156-6474396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 52

               
               
               Conread position:245-528
               
               
               Cow position:chr25:21245663-21245945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:245-536
               
               
               Cow position:chr25:38982043-38981760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):213, 86

               
               
               Conread position:245-618
               
               
               Cow position:chr25:14791694-14791329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr25:12204410-12204037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:245-622
               
               
               Cow position:chr25:25754056-25754428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr25:27868743-27868376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:245-624
               
               
               Cow position:chr25:36779437-36779061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 151

               
               
               Conread position:245-625
               
               
               Cow position:chr25:1838178-1837797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:246-612
               
               
               Cow position:chr25:5514950-5514587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 178

               
               
               Conread position:246-621
               
               
               Cow position:chr25:14833719-14834099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 84

               
               
               Conread position:246-622
               
               
               Cow position:chr25:41354369-41354733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:247-386
               
               
               Cow position:chr25:12521022-12521158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:247-417
               
               
               Cow position:chr25:10218109-10218279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:247-435
               
               
               Cow position:chr25:24008236-24008423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-450
               
               
               Cow position:chr25:17566526-17566326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:247-462
               
               
               Cow position:chr25:14513049-14512843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:247-471
               
               
               Cow position:chr25:20348800-20348576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-515
               
               
               Cow position:chr25:6886034-6886294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 124

               
               
               Conread position:247-593
               
               
               Cow position:chr25:27622027-27621683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 156

               
               
               Conread position:247-624
               
               
               Cow position:chr25:18294376-18294750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:249-406
               
               
               Cow position:chr25:26089878-26090029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:250-406
               
               
               Cow position:chr25:9754153-9754301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:251-456
               
               
               Cow position:chr25:35344965-35344771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:252-394
               
               
               Cow position:chr25:8157577-8157715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:253-454
               
               
               Cow position:chr25:24167969-24168163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:254-474
               
               
               Cow position:chr25:18988313-18988092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 183

               
               
               Conread position:255-618
               
               
               Cow position:chr25:41363218-41363567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:256-380
               
               
               Cow position:chr25:32453465-32453589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:256-623
               
               
               Cow position:chr25:22315132-22314767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:257-618
               
               
               Cow position:chr25:22531213-22530859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 63

               
               
               Conread position:258-459
               
               
               Cow position:chr25:21266937-21266736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:258-507
               
               
               Cow position:chr25:12097769-12097525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:258-623
               
               
               Cow position:chr25:36746515-36746880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 165

               
               
               Conread position:261-508
               
               
               Cow position:chr25:17975443-17975686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:264-404
               
               
               Cow position:chr25:16389369-16389507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:264-522
               
               
               Cow position:chr25:448423-448680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:264-623
               
               
               Cow position:chr25:2110998-2110650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 81

               
               
               Conread position:265-622
               
               
               Cow position:chr25:41349483-41349842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):153, 139

               
               
               Conread position:267-390
               
               
               Cow position:chr25:22340956-22340837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:203-471
               
               
               Cow position:chr26:32058654-32058390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:215-623
               
               
               Cow position:chr26:613683-614111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:217-405
               
               
               Cow position:chr26:8310699-8310511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 48

               
               
               Conread position:224-623
               
               
               Cow position:chr26:21351674-21351282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:225-568
               
               
               Cow position:chr26:32553662-32553321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:226-404
               
               
               Cow position:chr26:20448946-20448775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:226-624
               
               
               Cow position:chr26:34108742-34108348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:227-448
               
               
               Cow position:chr26:1365984-1365762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 191

               
               
               Conread position:228-389
               
               
               Cow position:chr26:27761673-27761830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:231-327
               
               
               Cow position:chr26:10747654-10747749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:235-444
               
               
               Cow position:chr26:17204173-17204374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):168, 28

               
               
               Conread position:239-436
               
               
               Cow position:chr26:10652375-10652181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):67, 156

               
               
               Conread position:240-384
               
               
               Cow position:chr26:16179528-16179383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-393
               
               
               Cow position:chr26:12821240-12821084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-431
               
               
               Cow position:chr26:30254663-30254857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:240-442
               
               
               Cow position:chr26:6794113-6793906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:240-447
               
               
               Cow position:chr26:6793907-6793702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:240-459
               
               
               Cow position:chr26:9104315-9104532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:240-480
               
               
               Cow position:chr26:1329508-1329272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 62

               
               
               Conread position:240-615
               
               
               Cow position:chr26:8700083-8700458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 46

               
               
               Conread position:241-625
               
               
               Cow position:chr26:2389088-2389482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:242-362
               
               
               Cow position:chr26:23582984-23583104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-364
               
               
               Cow position:chr26:16721827-16721707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:242-375
               
               
               Cow position:chr26:15373075-15373209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-382
               
               
               Cow position:chr26:22249515-22249656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr26:6252814-6252662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-398
               
               
               Cow position:chr26:17148666-17148510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:132
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr26:31605368-31605199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr26:20013440-20013255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):167, 103

               
               
               Conread position:242-439
               
               
               Cow position:chr26:19774339-19774534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:242-444
               
               
               Cow position:chr26:25300605-25300808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr26:8811092-8810882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr26:10767949-10768151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):206, 100

               
               
               Conread position:242-458
               
               
               Cow position:chr26:32865927-32866141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):149, 68

               
               
               Conread position:242-467
               
               
               Cow position:chr26:32026404-32026619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 133

               
               
               Conread position:242-496
               
               
               Cow position:chr26:16549947-16549695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 229

               
               
               Conread position:242-499
               
               
               Cow position:chr26:6188256-6188005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr26:25737436-25737171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-508
               
               
               Cow position:chr26:27491539-27491802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:242-520
               
               
               Cow position:chr26:18231329-18231057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:242-528
               
               
               Cow position:chr26:6794856-6795139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:242-535
               
               
               Cow position:chr26:35078522-35078813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:242-546
               
               
               Cow position:chr26:6463720-6463419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 259

               
               
               Conread position:242-570
               
               
               Cow position:chr26:23926024-23926345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 85

               
               
               Conread position:242-595
               
               
               Cow position:chr26:32955670-32956007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:242-610
               
               
               Cow position:chr26:17170505-17170136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-614
               
               
               Cow position:chr26:2531218-2531580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:242-617
               
               
               Cow position:chr26:9491886-9491531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr26:9867155-9867543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr26:13706042-13706403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr26:3072003-3072381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 51

               
               
               Conread position:242-624
               
               
               Cow position:chr26:26216046-26215656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 261

               
               
               Conread position:242-625
               
               
               Cow position:chr26:6422078-6422462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr26:6837774-6837394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-625
               
               
               Cow position:chr26:7961594-7961219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr26:8874052-8873670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:242-625
               
               
               Cow position:chr26:11814740-11815122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr26:12584038-12584418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:242-625
               
               
               Cow position:chr26:15198733-15199117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr26:22191455-22191074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 153

               
               
               Conread position:242-625
               
               
               Cow position:chr26:29434443-29434058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-347
               
               
               Cow position:chr26:12964735-12964839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-603
               
               
               Cow position:chr26:31701783-31701425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 281

               
               
               Conread position:243-625
               
               
               Cow position:chr26:16865484-16865101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-579
               
               
               Cow position:chr26:33112422-33112751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 148

               
               
               Conread position:244-625
               
               
               Cow position:chr26:1391189-1390808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-384
               
               
               Cow position:chr26:30568698-30568832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:245-440
               
               
               Cow position:chr26:21243061-21242872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:245-460
               
               
               Cow position:chr26:32897912-32898123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-478
               
               
               Cow position:chr26:2029582-2029823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:245-490
               
               
               Cow position:chr26:32013587-32013348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:245-574
               
               
               Cow position:chr26:31890053-31889728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 175

               
               
               Conread position:246-421
               
               
               Cow position:chr26:8186610-8186437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:247-446
               
               
               Cow position:chr26:30034449-30034643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:247-452
               
               
               Cow position:chr26:17675775-17675974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:247-456
               
               
               Cow position:chr26:26294239-26294436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:247-618
               
               
               Cow position:chr26:14174261-14173890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 268

               
               
               Conread position:247-620
               
               
               Cow position:chr26:12155160-12155526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:247-623
               
               
               Cow position:chr26:6475474-6475848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 7

               
               
               Conread position:247-624
               
               
               Cow position:chr26:818508-818872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:250-425
               
               
               Cow position:chr26:33857238-33857414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:250-433
               
               
               Cow position:chr26:15200559-15200741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:250-458
               
               
               Cow position:chr26:20846581-20846371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:250-624
               
               
               Cow position:chr26:26670791-26671159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:250-624
               
               
               Cow position:chr26:27063715-27064099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:252-462
               
               
               Cow position:chr26:34314642-34314424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 181

               
               
               Conread position:252-623
               
               
               Cow position:chr26:9604511-9604121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 70

               
               
               Conread position:252-624
               
               
               Cow position:chr26:33045034-33044669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:254-612
               
               
               Cow position:chr26:22116674-22116324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:255-429
               
               
               Cow position:chr26:5307085-5306913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:255-486
               
               
               Cow position:chr26:7642625-7642855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:255-625
               
               
               Cow position:chr26:6447652-6448022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 171

               
               
               Conread position:258-380
               
               
               Cow position:chr26:25299547-25299424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:258-416
               
               
               Cow position:chr26:30128072-30128227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:258-418
               
               
               Cow position:chr26:25526193-25526036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:260-540
               
               
               Cow position:chr26:20256786-20256513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:263-445
               
               
               Cow position:chr26:14293104-14292930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:264-475
               
               
               Cow position:chr26:26466781-26466985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:264-621
               
               
               Cow position:chr26:7525528-7525886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 81

               
               
               Conread position:265-455
               
               
               Cow position:chr26:28243678-28243869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:265-570
               
               
               Cow position:chr26:32652787-32653090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 80

               
               
               Conread position:270-448
               
               
               Cow position:chr26:35704324-35704145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:215-623
               
               
               Cow position:chr27:732549-732951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:216-379
               
               
               Cow position:chr27:426950-427117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:216-442
               
               
               Cow position:chr27:25277121-25277342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:216-459
               
               
               Cow position:chr27:6058481-6058726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 210

               
               
               Conread position:216-493
               
               
               Cow position:chr27:28921917-28921641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:216-625
               
               
               Cow position:chr27:28018319-28018725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:217-492
               
               
               Cow position:chr27:26509179-26508904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 184

               
               
               Conread position:220-496
               
               
               Cow position:chr27:11273561-11273828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:222-565
               
               
               Cow position:chr27:27038851-27038511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:222-625
               
               
               Cow position:chr27:23128442-23128842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:223-384
               
               
               Cow position:chr27:7731258-7731099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:223-431
               
               
               Cow position:chr27:18434483-18434277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:223-462
               
               
               Cow position:chr27:23554343-23554096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 221

               
               
               Conread position:223-517
               
               
               Cow position:chr27:22723718-22723431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:223-584
               
               
               Cow position:chr27:24227807-24227444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:223-614
               
               
               Cow position:chr27:18558346-18558745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:224-416
               
               
               Cow position:chr27:27550754-27550566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:224-564
               
               
               Cow position:chr27:8962268-8961940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:224-570
               
               
               Cow position:chr27:12246649-12246980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:226-375
               
               
               Cow position:chr27:715493-715647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:226-457
               
               
               Cow position:chr27:18967766-18967534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):80, 208

               
               
               Conread position:226-507
               
               
               Cow position:chr27:12429394-12429684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:226-522
               
               
               Cow position:chr27:30362236-30362530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:226-551
               
               
               Cow position:chr27:29399805-29400134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:227-438
               
               
               Cow position:chr27:29250869-29251083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:227-458
               
               
               Cow position:chr27:27259602-27259831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:227-463
               
               
               Cow position:chr27:26151014-26151251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:227-492
               
               
               Cow position:chr27:18507639-18507889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-335
               
               
               Cow position:chr27:22386862-22386974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:228-621
               
               
               Cow position:chr27:22035383-22034993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 271

               
               
               Conread position:229-607
               
               
               Cow position:chr27:15454208-15454583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:229-623
               
               
               Cow position:chr27:6073918-6074303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:229-625
               
               
               Cow position:chr27:26224280-26223871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 189

               
               
               Conread position:230-528
               
               
               Cow position:chr27:21669125-21668832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:239-433
               
               
               Cow position:chr27:20591989-20592184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:239-448
               
               
               Cow position:chr27:16871905-16871706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:239-458
               
               
               Cow position:chr27:22498565-22498776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):169, 106

               
               
               Conread position:239-625
               
               
               Cow position:chr27:17763431-17763811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:240-625
               
               
               Cow position:chr27:8062345-8061975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 57

               
               
               Conread position:241-416
               
               
               Cow position:chr27:13252016-13252191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-430
               
               
               Cow position:chr27:911073-910889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:241-548
               
               
               Cow position:chr27:29831680-29831375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:241-624
               
               
               Cow position:chr27:15871170-15871550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:242-340
               
               
               Cow position:chr27:16625909-16626006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr27:4011688-4011807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-367
               
               
               Cow position:chr27:16103819-16103936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-375
               
               
               Cow position:chr27:20789365-20789239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-376
               
               
               Cow position:chr27:17331510-17331644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-390
               
               
               Cow position:chr27:23890950-23891093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:242-391
               
               
               Cow position:chr27:154376-154525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr27:15633588-15633740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr27:16780879-16781024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-401
               
               
               Cow position:chr27:26426218-26426375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr27:22268512-22268673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr27:24357269-24357438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr27:20497946-20498125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr27:30988807-30988983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:242-437
               
               
               Cow position:chr27:27003263-27003079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr27:27245342-27245149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-440
               
               
               Cow position:chr27:19685700-19685509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr27:19647928-19647738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr27:30915018-30915207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr27:28164395-28164198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr27:27640991-27640777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 188

               
               
               Conread position:242-452
               
               
               Cow position:chr27:30765047-30765249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:242-457
               
               
               Cow position:chr27:28038330-28038115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr27:2592559-2592764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:242-458
               
               
               Cow position:chr27:12596776-12596978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr27:24321197-24321413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:242-462
               
               
               Cow position:chr27:2683133-2682917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:242-471
               
               
               Cow position:chr27:6500069-6500301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr27:30890298-30890522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:242-474
               
               
               Cow position:chr27:14902641-14902410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:242-475
               
               
               Cow position:chr27:6541640-6541865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:242-477
               
               
               Cow position:chr27:22220567-22220796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-477
               
               
               Cow position:chr27:27389007-27388786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:242-486
               
               
               Cow position:chr27:23929987-23930215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-487
               
               
               Cow position:chr27:2930588-2930344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-499
               
               
               Cow position:chr27:6550468-6550715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-501
               
               
               Cow position:chr27:30744814-30744555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-532
               
               
               Cow position:chr27:23015864-23016153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:242-533
               
               
               Cow position:chr27:28931783-28931491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 231

               
               
               Conread position:242-535
               
               
               Cow position:chr27:26787353-26787064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 122

               
               
               Conread position:242-537
               
               
               Cow position:chr27:20283653-20283925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-538
               
               
               Cow position:chr27:26424575-26424286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 71

               
               
               Conread position:242-562
               
               
               Cow position:chr27:30868729-30868413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-564
               
               
               Cow position:chr27:4805894-4805581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:242-569
               
               
               Cow position:chr27:8629862-8629540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr27:4386050-4385733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 54

               
               
               Conread position:242-570
               
               
               Cow position:chr27:23070348-23070028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-583
               
               
               Cow position:chr27:31219263-31219583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:242-603
               
               
               Cow position:chr27:1675380-1675738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-612
               
               
               Cow position:chr27:5861208-5861582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 310

               
               
               Conread position:242-617
               
               
               Cow position:chr27:17397440-17397072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 176

               
               
               Conread position:242-620
               
               
               Cow position:chr27:14670377-14669996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 177

               
               
               Conread position:242-622
               
               
               Cow position:chr27:17472820-17473207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:242-623
               
               
               Cow position:chr27:1123042-1123410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 140

               
               
               Conread position:242-623
               
               
               Cow position:chr27:19388025-19388414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 204

               
               
               Conread position:242-624
               
               
               Cow position:chr27:2298418-2298802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr27:9090792-9090406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 75

               
               
               Conread position:242-625
               
               
               Cow position:chr27:10580103-10579724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 295

               
               
               Conread position:242-625
               
               
               Cow position:chr27:12097601-12097985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr27:12240305-12239926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr27:14298353-14297970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr27:15100804-15100420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr27:15315516-15315879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):317, 55

               
               
               Conread position:242-625
               
               
               Cow position:chr27:23455144-23454760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 187

               
               
               Conread position:243-438
               
               
               Cow position:chr27:27055586-27055781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-503
               
               
               Cow position:chr27:23483239-23483493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 54

               
               
               Conread position:243-604
               
               
               Cow position:chr27:22171312-22171667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 117

               
               
               Conread position:243-624
               
               
               Cow position:chr27:4673031-4673404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:244-458
               
               
               Cow position:chr27:4812867-4812654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:244-588
               
               
               Cow position:chr27:7212698-7212368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:244-622
               
               
               Cow position:chr27:26807550-26807173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):264, 102

               
               
               Conread position:244-625
               
               
               Cow position:chr27:15312214-15312588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:245-360
               
               
               Cow position:chr27:8168417-8168300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:245-380
               
               
               Cow position:chr27:29312658-29312524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-398
               
               
               Cow position:chr27:27438494-27438341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:245-416
               
               
               Cow position:chr27:29283395-29283227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:245-426
               
               
               Cow position:chr27:27554669-27554495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:245-454
               
               
               Cow position:chr27:30354329-30354126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:245-477
               
               
               Cow position:chr27:10979877-10980106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:245-488
               
               
               Cow position:chr27:12516205-12516450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:245-523
               
               
               Cow position:chr27:23882364-23882077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 148

               
               
               Conread position:245-590
               
               
               Cow position:chr27:26428119-26427773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-598
               
               
               Cow position:chr27:30551011-30551376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):214, 98

               
               
               Conread position:245-610
               
               
               Cow position:chr27:27449415-27449063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:245-624
               
               
               Cow position:chr27:20549693-20549301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:245-625
               
               
               Cow position:chr27:8430424-8430031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:245-625
               
               
               Cow position:chr27:13875745-13876116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:245-625
               
               
               Cow position:chr27:21978125-21977747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:246-621
               
               
               Cow position:chr27:27040620-27040982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:246-624
               
               
               Cow position:chr27:8291990-8291624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:247-380
               
               
               Cow position:chr27:20548462-20548331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-389
               
               
               Cow position:chr27:13376013-13375877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-427
               
               
               Cow position:chr27:18739400-18739580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:247-446
               
               
               Cow position:chr27:30359421-30359606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-451
               
               
               Cow position:chr27:21453063-21452854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 181

               
               
               Conread position:247-485
               
               
               Cow position:chr27:24014723-24014491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:247-500
               
               
               Cow position:chr27:11081210-11081464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-623
               
               
               Cow position:chr27:1353603-1353985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:247-623
               
               
               Cow position:chr27:21408545-21408163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 278

               
               
               Conread position:247-624
               
               
               Cow position:chr27:27020086-27019714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:247-625
               
               
               Cow position:chr27:11435306-11434941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:247-625
               
               
               Cow position:chr27:13410158-13409776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 306

               
               
               Conread position:247-625
               
               
               Cow position:chr27:30177558-30177185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 53

               
               
               Conread position:248-412
               
               
               Cow position:chr27:18031046-18030879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:249-486
               
               
               Cow position:chr27:26436863-26436623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:249-603
               
               
               Cow position:chr27:26433792-26433446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 52

               
               
               Conread position:249-615
               
               
               Cow position:chr27:22426814-22426449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:249-621
               
               
               Cow position:chr27:8353492-8353854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 25

               
               
               Conread position:249-621
               
               
               Cow position:chr27:22179776-22179402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:250-454
               
               
               Cow position:chr27:18593286-18593488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):198, 165

               
               
               Conread position:250-455
               
               
               Cow position:chr27:26218725-26218915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:250-515
               
               
               Cow position:chr27:2957419-2957685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:252-438
               
               
               Cow position:chr27:20354605-20354783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:254-377
               
               
               Cow position:chr27:16589692-16589570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:257-576
               
               
               Cow position:chr27:15859063-15858753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:258-384
               
               
               Cow position:chr27:28009034-28008907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:258-420
               
               
               Cow position:chr27:30989818-30989658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:258-590
               
               
               Cow position:chr27:16237932-16238251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:258-594
               
               
               Cow position:chr27:24477440-24477763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 142

               
               
               Conread position:258-622
               
               
               Cow position:chr27:15925368-15925722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:259-623
               
               
               Cow position:chr27:26413225-26412886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:260-543
               
               
               Cow position:chr27:18544023-18544306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:266-460
               
               
               Cow position:chr27:20037091-20036903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):161, 74

               
               
               Conread position:266-492
               
               
               Cow position:chr27:16263370-16263590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:214-372
               
               
               Cow position:chr28:17235748-17235904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:215-423
               
               
               Cow position:chr28:11817983-11818186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:215-459
               
               
               Cow position:chr28:8408718-8408473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 136

               
               
               Conread position:215-519
               
               
               Cow position:chr28:15008143-15007842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:215-543
               
               
               Cow position:chr28:8347715-8347376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:215-624
               
               
               Cow position:chr28:21363727-21363333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:216-459
               
               
               Cow position:chr28:2862848-2862599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:216-516
               
               
               Cow position:chr28:2124410-2124120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:217-395
               
               
               Cow position:chr28:25459508-25459327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:217-455
               
               
               Cow position:chr28:21502374-21502137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:217-592
               
               
               Cow position:chr28:24605833-24606207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 173

               
               
               Conread position:222-606
               
               
               Cow position:chr28:5817814-5817439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:223-519
               
               
               Cow position:chr28:4880293-4880586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:223-592
               
               
               Cow position:chr28:12946921-12946549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 198

               
               
               Conread position:223-624
               
               
               Cow position:chr28:10529515-10529892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:224-459
               
               
               Cow position:chr28:23460122-23459876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:224-569
               
               
               Cow position:chr28:19079873-19080242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:224-621
               
               
               Cow position:chr28:24966358-24965961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 30

               
               
               Conread position:226-623
               
               
               Cow position:chr28:20409362-20408957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 185

               
               
               Conread position:227-384
               
               
               Cow position:chr28:23724489-23724643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:227-623
               
               
               Cow position:chr28:21672765-21672388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:228-619
               
               
               Cow position:chr28:5684675-5684282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 98

               
               
               Conread position:229-624
               
               
               Cow position:chr28:17316836-17316438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:230-450
               
               
               Cow position:chr28:31841377-31841590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:237-624
               
               
               Cow position:chr28:34082062-34082442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 5

               
               
               Conread position:239-617
               
               
               Cow position:chr28:12430561-12430186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 96

               
               
               Conread position:240-480
               
               
               Cow position:chr28:7144742-7144507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:240-508
               
               
               Cow position:chr28:16770536-16770281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:240-623
               
               
               Cow position:chr28:11752190-11752573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 28

               
               
               Conread position:241-623
               
               
               Cow position:chr28:18790966-18790589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:242-343
               
               
               Cow position:chr28:30746777-30746878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-375
               
               
               Cow position:chr28:7608029-7608161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr28:13290182-13290318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr28:3169244-3169389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):149, 70

               
               
               Conread position:242-394
               
               
               Cow position:chr28:4090097-4090242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr28:5437137-5437301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-415
               
               
               Cow position:chr28:2737857-2738030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr28:5074559-5074724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:242-417
               
               
               Cow position:chr28:9108397-9108221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr28:10053382-10053566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):70, 126

               
               
               Conread position:242-430
               
               
               Cow position:chr28:5658502-5658321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr28:34430471-34430660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr28:26220206-26220021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:242-440
               
               
               Cow position:chr28:11422865-11423047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr28:2898949-2898746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-448
               
               
               Cow position:chr28:22345969-22345768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr28:3078732-3078930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-449
               
               
               Cow position:chr28:13607836-13607633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):174, 60

               
               
               Conread position:242-452
               
               
               Cow position:chr28:13865793-13865590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr28:4888800-4889015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr28:19026061-19026264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr28:24996638-24996851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:242-479
               
               
               Cow position:chr28:26784514-26784750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-506
               
               
               Cow position:chr28:34007991-34008262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr28:9277099-9276833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):187, 168

               
               
               Conread position:242-529
               
               
               Cow position:chr28:22040072-22040361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr28:2960883-2961157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-554
               
               
               Cow position:chr28:34878019-34878325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:242-565
               
               
               Cow position:chr28:16364017-16364339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:242-567
               
               
               Cow position:chr28:23480307-23480630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:242-569
               
               
               Cow position:chr28:10745163-10744833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-581
               
               
               Cow position:chr28:4588049-4587712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-582
               
               
               Cow position:chr28:5904682-5904350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 30

               
               
               Conread position:242-591
               
               
               Cow position:chr28:19515437-19515786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-607
               
               
               Cow position:chr28:11280746-11281112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-609
               
               
               Cow position:chr28:5335304-5335671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 235

               
               
               Conread position:242-616
               
               
               Cow position:chr28:3746154-3745785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr28:20966451-20966827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr28:28356575-28356951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:242-618
               
               
               Cow position:chr28:10533983-10534355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 50

               
               
               Conread position:242-618
               
               
               Cow position:chr28:23530820-23530443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:242-619
               
               
               Cow position:chr28:4188480-4188130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 49

               
               
               Conread position:242-619
               
               
               Cow position:chr28:30327140-30327505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 116

               
               
               Conread position:242-620
               
               
               Cow position:chr28:4070920-4070542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 108

               
               
               Conread position:242-620
               
               
               Cow position:chr28:4536407-4536058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr28:11687078-11687457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 199

               
               
               Conread position:242-621
               
               
               Cow position:chr28:3914662-3914286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:242-621
               
               
               Cow position:chr28:8022159-8022535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr28:9285423-9285787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr28:13474251-13473888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 81

               
               
               Conread position:242-621
               
               
               Cow position:chr28:21868406-21868027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 181

               
               
               Conread position:242-621
               
               
               Cow position:chr28:26103659-26103303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:242-621
               
               
               Cow position:chr28:28472211-28471848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 241

               
               
               Conread position:242-623
               
               
               Cow position:chr28:8787490-8787134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr28:11585254-11585633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr28:25249304-25248942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):330, 50

               
               
               Conread position:242-623
               
               
               Cow position:chr28:26922416-26922802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:242-623
               
               
               Cow position:chr28:28164037-28163671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr28:32300409-32300798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:242-624
               
               
               Cow position:chr28:3256748-3256376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr28:21103885-21104271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:242-624
               
               
               Cow position:chr28:21355174-21354797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr28:21844906-21844529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:1957574-1957190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:5638262-5637878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:6775677-6776061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-625
               
               
               Cow position:chr28:6960452-6960069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr28:7208920-7209298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:242-625
               
               
               Cow position:chr28:10563602-10563221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:11426591-11426964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:11451512-11451902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:242-625
               
               
               Cow position:chr28:12048752-12049129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 58

               
               
               Conread position:242-625
               
               
               Cow position:chr28:12117028-12117413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:15605734-15605350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:17370255-17369876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 217

               
               
               Conread position:242-625
               
               
               Cow position:chr28:20124734-20124361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:22170765-22171158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:242-625
               
               
               Cow position:chr28:23686249-23685865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:26782039-26781655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr28:34243918-34243534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-406
               
               
               Cow position:chr28:4884314-4884476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:243-442
               
               
               Cow position:chr28:14649298-14649102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 113

               
               
               Conread position:243-454
               
               
               Cow position:chr28:27428693-27428495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:243-456
               
               
               Cow position:chr28:3492835-3493043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):139, 114

               
               
               Conread position:243-520
               
               
               Cow position:chr28:12619518-12619242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 223

               
               
               Conread position:243-532
               
               
               Cow position:chr28:5204142-5203870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:243-535
               
               
               Cow position:chr28:7549110-7549400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:243-601
               
               
               Cow position:chr28:14998014-14997660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:243-624
               
               
               Cow position:chr28:25411828-25411446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr28:18096930-18096549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:244-416
               
               
               Cow position:chr28:5188455-5188621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:244-450
               
               
               Cow position:chr28:27218273-27218067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-568
               
               
               Cow position:chr28:33163515-33163828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr28:34731940-34731558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-380
               
               
               Cow position:chr28:26982789-26982930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-386
               
               
               Cow position:chr28:118104-118245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:245-427
               
               
               Cow position:chr28:12951377-12951202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:245-431
               
               
               Cow position:chr28:28076462-28076642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:245-452
               
               
               Cow position:chr28:26719298-26719105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:245-452
               
               
               Cow position:chr28:33051976-33051765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr28:16204381-16204596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 191

               
               
               Conread position:245-459
               
               
               Cow position:chr28:16252912-16253117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:245-460
               
               
               Cow position:chr28:3408259-3408480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:245-471
               
               
               Cow position:chr28:15263769-15263998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 209

               
               
               Conread position:245-474
               
               
               Cow position:chr28:23410377-23410601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:245-493
               
               
               Cow position:chr28:10035347-10035119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:245-493
               
               
               Cow position:chr28:15043914-15044152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):196, 65

               
               
               Conread position:245-505
               
               
               Cow position:chr28:10669523-10669266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:245-520
               
               
               Cow position:chr28:19222648-19222917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:245-529
               
               
               Cow position:chr28:7590233-7590515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:245-560
               
               
               Cow position:chr28:17738126-17738441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 269

               
               
               Conread position:245-583
               
               
               Cow position:chr28:19295412-19295749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:245-619
               
               
               Cow position:chr28:7865272-7864909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr28:20313222-20312847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:245-623
               
               
               Cow position:chr28:21598306-21598679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:245-625
               
               
               Cow position:chr28:16085271-16084899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:245-625
               
               
               Cow position:chr28:21380826-21380456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 166

               
               
               Conread position:245-625
               
               
               Cow position:chr28:34208654-34208285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:246-621
               
               
               Cow position:chr28:30293639-30294011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:247-372
               
               
               Cow position:chr28:26264752-26264628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-403
               
               
               Cow position:chr28:8935883-8935727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-416
               
               
               Cow position:chr28:18625175-18625003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-437
               
               
               Cow position:chr28:4914149-4914342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-450
               
               
               Cow position:chr28:24367986-24368204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:247-451
               
               
               Cow position:chr28:4057927-4057732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-520
               
               
               Cow position:chr28:7512641-7512913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 224

               
               
               Conread position:247-543
               
               
               Cow position:chr28:13267732-13267435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 234

               
               
               Conread position:247-568
               
               
               Cow position:chr28:34442810-34443134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 268

               
               
               Conread position:248-395
               
               
               Cow position:chr28:27313797-27313947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:250-564
               
               
               Cow position:chr28:6051678-6051348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):187, 124

               
               
               Conread position:250-601
               
               
               Cow position:chr28:7267994-7268343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 8

               
               
               Conread position:251-362
               
               
               Cow position:chr28:657507-657618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 98

               
               
               Conread position:251-389
               
               
               Cow position:chr28:4834900-4835038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:251-406
               
               
               Cow position:chr28:25283147-25282995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:251-454
               
               
               Cow position:chr28:16370134-16370332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 87

               
               
               Conread position:252-455
               
               
               Cow position:chr28:6861895-6861695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):152, 93

               
               
               Conread position:252-589
               
               
               Cow position:chr28:8681901-8682241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:252-623
               
               
               Cow position:chr28:16441324-16440973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:255-432
               
               
               Cow position:chr28:2131985-2132158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:255-459
               
               
               Cow position:chr28:16243821-16244021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:255-528
               
               
               Cow position:chr28:12758564-12758838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 170

               
               
               Conread position:256-397
               
               
               Cow position:chr28:4158895-4158751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:257-623
               
               
               Cow position:chr28:18717185-18717551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:258-416
               
               
               Cow position:chr28:2888366-2888210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:258-454
               
               
               Cow position:chr28:22485183-22484991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:258-534
               
               
               Cow position:chr28:22371742-22372012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:258-619
               
               
               Cow position:chr28:20759985-20760345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:258-621
               
               
               Cow position:chr28:5805452-5805094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 87

               
               
               Conread position:259-620
               
               
               Cow position:chr28:26269261-26268912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 38

               
               
               Conread position:260-449
               
               
               Cow position:chr28:16354672-16354872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:260-511
               
               
               Cow position:chr28:6059532-6059782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 202

               
               
               Conread position:260-621
               
               
               Cow position:chr28:18591206-18590839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 143

               
               
               Conread position:263-456
               
               
               Cow position:chr28:14494768-14494573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:264-383
               
               
               Cow position:chr28:11829009-11829129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:264-430
               
               
               Cow position:chr28:33036538-33036699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:264-619
               
               
               Cow position:chr28:11827422-11827074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:264-621
               
               
               Cow position:chr28:29199655-29199304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 66

               
               
               Conread position:266-543
               
               
               Cow position:chr28:33884335-33884064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):225, 66

               
               
               Conread position:268-580
               
               
               Cow position:chr28:3751242-3750928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 83

               
               
               Conread position:270-446
               
               
               Cow position:chr28:24646467-24646291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-624
               
               
               Cow position:chr28:5054099-5054442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 238

               
               
               Conread position:215-384
               
               
               Cow position:chr29:11053882-11054048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:215-450
               
               
               Cow position:chr29:2522543-2522318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:217-609
               
               
               Cow position:chr29:18963704-18963318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):358, 64

               
               
               Conread position:217-623
               
               
               Cow position:chr29:43496023-43495637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:217-624
               
               
               Cow position:chr29:13639397-13639787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:220-458
               
               
               Cow position:chr29:356290-356058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:223-468
               
               
               Cow position:chr29:34359839-34360072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:223-624
               
               
               Cow position:chr29:28775492-28775888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:224-583
               
               
               Cow position:chr29:28868602-28868237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:225-430
               
               
               Cow position:chr29:16309708-16309510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:226-390
               
               
               Cow position:chr29:44988824-44988982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:226-393
               
               
               Cow position:chr29:41365077-41364906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:226-416
               
               
               Cow position:chr29:39643140-39642950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:226-428
               
               
               Cow position:chr29:1395559-1395368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:226-453
               
               
               Cow position:chr29:26330172-26329955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:226-564
               
               
               Cow position:chr29:28195548-28195893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:226-623
               
               
               Cow position:chr29:27858757-27858376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:227-409
               
               
               Cow position:chr29:26654076-26654261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-386
               
               
               Cow position:chr29:26275570-26275417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr29:25092073-25091910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:228-412
               
               
               Cow position:chr29:26986891-26986720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:228-470
               
               
               Cow position:chr29:42364055-42364294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:229-459
               
               
               Cow position:chr29:40166202-40165973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:230-623
               
               
               Cow position:chr29:24624207-24623810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:231-621
               
               
               Cow position:chr29:45005671-45006047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:234-624
               
               
               Cow position:chr29:32290560-32290168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:239-416
               
               
               Cow position:chr29:868722-868546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:239-459
               
               
               Cow position:chr29:25333517-25333722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:239-623
               
               
               Cow position:chr29:19428606-19428234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:239-624
               
               
               Cow position:chr29:17409282-17408898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:239-625
               
               
               Cow position:chr29:16065901-16065507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:240-341
               
               
               Cow position:chr29:29314709-29314810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-370
               
               
               Cow position:chr29:10235187-10235310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:240-446
               
               
               Cow position:chr29:23113629-23113423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:240-447
               
               
               Cow position:chr29:18021736-18021932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:240-471
               
               
               Cow position:chr29:14097181-14097413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-547
               
               
               Cow position:chr29:12798865-12798575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:240-558
               
               
               Cow position:chr29:38581922-38581601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 174

               
               
               Conread position:240-584
               
               
               Cow position:chr29:16175325-16175664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:240-604
               
               
               Cow position:chr29:8125645-8126008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 178

               
               
               Conread position:240-614
               
               
               Cow position:chr29:26017556-26017934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 164

               
               
               Conread position:240-617
               
               
               Cow position:chr29:36217063-36216692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:240-624
               
               
               Cow position:chr29:1933608-1933994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:241-486
               
               
               Cow position:chr29:21000588-21000346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr29:31674572-31674473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-362
               
               
               Cow position:chr29:44682155-44682273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr29:30188395-30188531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-389
               
               
               Cow position:chr29:3100313-3100461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr29:10818491-10818636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr29:15809759-15809609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr29:26501452-26501302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-404
               
               
               Cow position:chr29:30440875-30440711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:242-412
               
               
               Cow position:chr29:6286214-6286380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:242-415
               
               
               Cow position:chr29:3711334-3711161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr29:19253876-19254054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-424
               
               
               Cow position:chr29:42886331-42886146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr29:24103601-24103784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr29:34773790-34773964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr29:22714780-22714965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr29:22778233-22778422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr29:44378471-44378665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:242-439
               
               
               Cow position:chr29:20903343-20903537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-439
               
               
               Cow position:chr29:23984014-23984213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-440
               
               
               Cow position:chr29:25737474-25737667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):186, 103

               
               
               Conread position:242-441
               
               
               Cow position:chr29:11787740-11787541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):162, 143

               
               
               Conread position:242-442
               
               
               Cow position:chr29:26726113-26725912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr29:9139357-9139147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:242-454
               
               
               Cow position:chr29:4691734-4691950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 59

               
               
               Conread position:242-458
               
               
               Cow position:chr29:12680102-12679888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr29:22175631-22175425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:242-459
               
               
               Cow position:chr29:2984832-2984618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-459
               
               
               Cow position:chr29:19338931-19338710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:242-460
               
               
               Cow position:chr29:4066030-4065818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):202, 113

               
               
               Conread position:242-463
               
               
               Cow position:chr29:9195176-9195398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:242-470
               
               
               Cow position:chr29:5063091-5062852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:242-471
               
               
               Cow position:chr29:4043356-4043126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-484
               
               
               Cow position:chr29:1709862-1709625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:242-490
               
               
               Cow position:chr29:28595999-28596247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-495
               
               
               Cow position:chr29:2644359-2644613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):58, 134

               
               
               Conread position:242-499
               
               
               Cow position:chr29:10456615-10456861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-507
               
               
               Cow position:chr29:13372609-13372349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr29:43195938-43195675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):64, 114

               
               
               Conread position:242-516
               
               
               Cow position:chr29:43311850-43312121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-534
               
               
               Cow position:chr29:29974987-29974700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-535
               
               
               Cow position:chr29:40583737-40583452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-568
               
               
               Cow position:chr29:26615778-26616114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 103

               
               
               Conread position:242-569
               
               
               Cow position:chr29:43328584-43328259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 107

               
               
               Conread position:242-570
               
               
               Cow position:chr29:24304523-24304194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-579
               
               
               Cow position:chr29:12451320-12450996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:242-583
               
               
               Cow position:chr29:19125287-19124967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:242-588
               
               
               Cow position:chr29:11397980-11398324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):161, 60

               
               
               Conread position:242-589
               
               
               Cow position:chr29:35501708-35502045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 12

               
               
               Conread position:242-604
               
               
               Cow position:chr29:17041594-17041236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:242-618
               
               
               Cow position:chr29:26778822-26778463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr29:38349183-38349557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:242-620
               
               
               Cow position:chr29:17109912-17109542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 102

               
               
               Conread position:242-621
               
               
               Cow position:chr29:40117514-40117123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:242-622
               
               
               Cow position:chr29:24952632-24952249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 165

               
               
               Conread position:242-622
               
               
               Cow position:chr29:40013757-40014129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:242-623
               
               
               Cow position:chr29:26980343-26979969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):334, 221

               
               
               Conread position:242-624
               
               
               Cow position:chr29:18212049-18212427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:242-624
               
               
               Cow position:chr29:32963500-32963102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 55

               
               
               Conread position:242-624
               
               
               Cow position:chr29:34745717-34746088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:242-624
               
               
               Cow position:chr29:35292032-35291664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 30

               
               
               Conread position:242-625
               
               
               Cow position:chr29:1479632-1479248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:2521531-2521144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:6878752-6879132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 207

               
               
               Conread position:242-625
               
               
               Cow position:chr29:13127966-13128352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:16382802-16382419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:242-625
               
               
               Cow position:chr29:17117876-17117497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr29:20213742-20213358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:20593912-20593529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr29:31185556-31185173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 245

               
               
               Conread position:242-625
               
               
               Cow position:chr29:32318039-32317660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-625
               
               
               Cow position:chr29:36530809-36530429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:38261307-38261693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:38671910-38672295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr29:42808152-42807778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:242-625
               
               
               Cow position:chr29:45582869-45583240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr29:45650399-45650763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 115

               
               
               Conread position:243-367
               
               
               Cow position:chr29:27588864-27588743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:243-370
               
               
               Cow position:chr29:23243937-23244064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-451
               
               
               Cow position:chr29:22613369-22613174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:243-468
               
               
               Cow position:chr29:39111372-39111586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:243-528
               
               
               Cow position:chr29:9709638-9709361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:244-528
               
               
               Cow position:chr29:17773888-17773603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 231

               
               
               Conread position:244-625
               
               
               Cow position:chr29:14611425-14611043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 231

               
               
               Conread position:244-625
               
               
               Cow position:chr29:38410376-38409994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-402
               
               
               Cow position:chr29:6337602-6337450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:245-406
               
               
               Cow position:chr29:31489262-31489103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:245-410
               
               
               Cow position:chr29:14034384-14034547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:245-427
               
               
               Cow position:chr29:4520276-4520098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-430
               
               
               Cow position:chr29:10659397-10659588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:245-430
               
               
               Cow position:chr29:25474861-25474667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:245-431
               
               
               Cow position:chr29:32767582-32767762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:245-443
               
               
               Cow position:chr29:23697920-23697723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:245-446
               
               
               Cow position:chr29:44135519-44135717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:245-448
               
               
               Cow position:chr29:4194176-4194379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:245-450
               
               
               Cow position:chr29:4805173-4804973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:245-455
               
               
               Cow position:chr29:41530788-41530585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:245-456
               
               
               Cow position:chr29:22068805-22069013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:245-457
               
               
               Cow position:chr29:29769410-29769613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-471
               
               
               Cow position:chr29:3502993-3502778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):201, 57

               
               
               Conread position:245-481
               
               
               Cow position:chr29:3396047-3395822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:245-486
               
               
               Cow position:chr29:45589650-45589881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:245-565
               
               
               Cow position:chr29:35485189-35484870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:245-591
               
               
               Cow position:chr29:20673858-20674209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:245-616
               
               
               Cow position:chr29:35281438-35281077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:245-617
               
               
               Cow position:chr29:39567628-39567261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 100

               
               
               Conread position:245-623
               
               
               Cow position:chr29:6925953-6925585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 88

               
               
               Conread position:245-623
               
               
               Cow position:chr29:21933173-21933566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:245-624
               
               
               Cow position:chr29:4120789-4120419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:245-624
               
               
               Cow position:chr29:16609683-16609306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 147

               
               
               Conread position:246-429
               
               
               Cow position:chr29:26985168-26984989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:246-488
               
               
               Cow position:chr29:603377-603608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:246-508
               
               
               Cow position:chr29:16657630-16657373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:246-620
               
               
               Cow position:chr29:26334448-26334815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:246-625
               
               
               Cow position:chr29:12004821-12005200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:247-405
               
               
               Cow position:chr29:14484605-14484761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:247-410
               
               
               Cow position:chr29:5109265-5109431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-426
               
               
               Cow position:chr29:36183220-36183039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:247-437
               
               
               Cow position:chr29:3502506-3502309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:247-450
               
               
               Cow position:chr29:19389426-19389226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:247-455
               
               
               Cow position:chr29:41747383-41747179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:247-487
               
               
               Cow position:chr29:699677-699907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:247-517
               
               
               Cow position:chr29:36037641-36037385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-552
               
               
               Cow position:chr29:37785230-37785548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-586
               
               
               Cow position:chr29:26519522-26519856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:247-623
               
               
               Cow position:chr29:11696469-11696101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 82

               
               
               Conread position:247-624
               
               
               Cow position:chr29:2744333-2744705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-624
               
               
               Cow position:chr29:9638378-9638746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:247-624
               
               
               Cow position:chr29:13615698-13616088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:248-502
               
               
               Cow position:chr29:44310088-44310340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:249-380
               
               
               Cow position:chr29:32211119-32211250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:249-407
               
               
               Cow position:chr29:28446319-28446477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:249-412
               
               
               Cow position:chr29:14615320-14615482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:250-378
               
               
               Cow position:chr29:4334664-4334539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:250-378
               
               
               Cow position:chr29:39329658-39329786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-384
               
               
               Cow position:chr29:28979545-28979674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:250-405
               
               
               Cow position:chr29:28166277-28166433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:250-624
               
               
               Cow position:chr29:15944509-15944138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:253-623
               
               
               Cow position:chr29:24345517-24345898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:254-441
               
               
               Cow position:chr29:11562547-11562363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:254-467
               
               
               Cow position:chr29:35636362-35636147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:254-625
               
               
               Cow position:chr29:4480240-4480609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 163

               
               
               Conread position:255-472
               
               
               Cow position:chr29:17135777-17135569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:258-415
               
               
               Cow position:chr29:38580905-38580752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:258-451
               
               
               Cow position:chr29:29475325-29475508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:258-625
               
               
               Cow position:chr29:44901776-44902137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:259-624
               
               
               Cow position:chr29:36632914-36633268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:260-358
               
               
               Cow position:chr29:24252164-24252066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:260-450
               
               
               Cow position:chr29:5098834-5099022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:260-623
               
               
               Cow position:chr29:26285109-26285461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:260-624
               
               
               Cow position:chr29:20933638-20933272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 246

               
               
               Conread position:263-623
               
               
               Cow position:chr29:4874970-4875338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:263-623
               
               
               Cow position:chr29:18748658-18749014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:264-429
               
               
               Cow position:chr29:34744694-34744855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:264-623
               
               
               Cow position:chr29:17182-17525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:264-623
               
               
               Cow position:chr29:19762198-19761842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:267-623
               
               
               Cow position:chr29:19756366-19756014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 64

               
               
               Conread position:270-451
               
               
               Cow position:chr29:27009338-27009157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-380
               
               
               Cow position:chr3:25060032-25059861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:215-405
               
               
               Cow position:chr3:29334560-29334751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:215-508
               
               
               Cow position:chr3:59366510-59366210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 266

               
               
               Conread position:215-624
               
               
               Cow position:chr3:1830621-1831021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:216-455
               
               
               Cow position:chr3:17895796-17895567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:216-462
               
               
               Cow position:chr3:79148320-79148570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:216-518
               
               
               Cow position:chr3:75570497-75570782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:216-564
               
               
               Cow position:chr3:15661746-15662094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:216-623
               
               
               Cow position:chr3:71231351-71230951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:217-458
               
               
               Cow position:chr3:76387652-76387902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 208

               
               
               Conread position:217-623
               
               
               Cow position:chr3:80581616-80581224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:217-625
               
               
               Cow position:chr3:42452463-42452053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:220-624
               
               
               Cow position:chr3:64875185-64875589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 251

               
               
               Conread position:223-363
               
               
               Cow position:chr3:70631958-70631819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:223-384
               
               
               Cow position:chr3:15859723-15859887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:223-447
               
               
               Cow position:chr3:49731695-49731916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:223-448
               
               
               Cow position:chr3:5416281-5416511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:223-624
               
               
               Cow position:chr3:30180027-30179627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:223-624
               
               
               Cow position:chr3:59515049-59514667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:224-430
               
               
               Cow position:chr3:28692489-28692691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:224-452
               
               
               Cow position:chr3:5097151-5096919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:224-471
               
               
               Cow position:chr3:18763838-18763591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 126

               
               
               Conread position:225-370
               
               
               Cow position:chr3:3638131-3637980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:226-416
               
               
               Cow position:chr3:15752692-15752876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:226-426
               
               
               Cow position:chr3:8061068-8060874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:226-452
               
               
               Cow position:chr3:74699453-74699679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:226-455
               
               
               Cow position:chr3:75057191-75057400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:226-593
               
               
               Cow position:chr3:26904053-26903692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:226-607
               
               
               Cow position:chr3:27286172-27285790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 252

               
               
               Conread position:226-623
               
               
               Cow position:chr3:69961773-69962172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:227-459
               
               
               Cow position:chr3:495301-495538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-477
               
               
               Cow position:chr3:65800531-65800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:227-520
               
               
               Cow position:chr3:67543926-67544226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 212

               
               
               Conread position:227-520
               
               
               Cow position:chr3:83441941-83442231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:227-554
               
               
               Cow position:chr3:58158529-58158838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-621
               
               
               Cow position:chr3:48363018-48362631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:228-343
               
               
               Cow position:chr3:75107729-75107615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:228-395
               
               
               Cow position:chr3:15192506-15192337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:228-435
               
               
               Cow position:chr3:59701947-59701746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:228-441
               
               
               Cow position:chr3:525285-525081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:228-446
               
               
               Cow position:chr3:68627746-68627953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:228-459
               
               
               Cow position:chr3:73443149-73443378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:228-516
               
               
               Cow position:chr3:72019054-72018775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:228-623
               
               
               Cow position:chr3:53046722-53047096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:229-389
               
               
               Cow position:chr3:11063316-11063157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:229-516
               
               
               Cow position:chr3:70895986-70895699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 269

               
               
               Conread position:229-616
               
               
               Cow position:chr3:75479940-75479571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:233-461
               
               
               Cow position:chr3:27274460-27274247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:235-459
               
               
               Cow position:chr3:73759588-73759810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 7

               
               
               Conread position:235-595
               
               
               Cow position:chr3:8147740-8148090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:239-417
               
               
               Cow position:chr3:44932437-44932259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-458
               
               
               Cow position:chr3:64281007-64281226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-618
               
               
               Cow position:chr3:17100065-17100435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:239-622
               
               
               Cow position:chr3:15687595-15687976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:239-623
               
               
               Cow position:chr3:26894586-26894216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:239-624
               
               
               Cow position:chr3:61539728-61539341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 237

               
               
               Conread position:240-349
               
               
               Cow position:chr3:75687514-75687624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:240-393
               
               
               Cow position:chr3:19796538-19796691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 142

               
               
               Conread position:240-425
               
               
               Cow position:chr3:22820492-22820312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):142, 118

               
               
               Conread position:240-433
               
               
               Cow position:chr3:43233432-43233238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-449
               
               
               Cow position:chr3:77467860-77467651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:240-450
               
               
               Cow position:chr3:68708080-68708283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 146

               
               
               Conread position:240-451
               
               
               Cow position:chr3:12669009-12668796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:240-459
               
               
               Cow position:chr3:68881188-68881400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):185, 146

               
               
               Conread position:240-471
               
               
               Cow position:chr3:2518608-2518840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-508
               
               
               Cow position:chr3:16547602-16547336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:240-543
               
               
               Cow position:chr3:31206799-31206498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:240-546
               
               
               Cow position:chr3:49230941-49230637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 186

               
               
               Conread position:240-586
               
               
               Cow position:chr3:20663609-20663955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 333

               
               
               Conread position:240-621
               
               
               Cow position:chr3:77227246-77226863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 237

               
               
               Conread position:240-625
               
               
               Cow position:chr3:68695880-68696263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 156

               
               
               Conread position:241-422
               
               
               Cow position:chr3:35074606-35074426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):171, 128

               
               
               Conread position:241-459
               
               
               Cow position:chr3:33252954-33253169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:242-332
               
               
               Cow position:chr3:34294363-34294453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-342
               
               
               Cow position:chr3:36418545-36418644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:242-343
               
               
               Cow position:chr3:16891220-16891119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:242-345
               
               
               Cow position:chr3:76922741-76922844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr3:20677913-20678020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr3:66884018-66884135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr3:74079717-74079834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-373
               
               
               Cow position:chr3:7940634-7940761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-378
               
               
               Cow position:chr3:10896752-10896618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-383
               
               
               Cow position:chr3:70609546-70609407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr3:35005700-35005561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-392
               
               
               Cow position:chr3:76713402-76713546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:242-393
               
               
               Cow position:chr3:7302852-7303005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr3:23215650-23215811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr3:188785-188624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:242-410
               
               
               Cow position:chr3:60265319-60265479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:242-412
               
               
               Cow position:chr3:7331191-7331361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr3:25754946-25754788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-420
               
               
               Cow position:chr3:34937765-34937589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-421
               
               
               Cow position:chr3:26970749-26970572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr3:61144022-61143835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr3:71238078-71237899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr3:53509763-53509945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr3:57624386-57624208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:242-430
               
               
               Cow position:chr3:26960668-26960855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 155

               
               
               Conread position:242-431
               
               
               Cow position:chr3:73395043-73394853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr3:75080689-75080497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr3:54946050-54945851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr3:26065925-26065721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr3:38864037-38863833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 103

               
               
               Conread position:242-449
               
               
               Cow position:chr3:43307609-43307817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 19

               
               
               Conread position:242-449
               
               
               Cow position:chr3:81277777-81277985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr3:39171561-39171766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr3:49140120-49140329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 178

               
               
               Conread position:242-450
               
               
               Cow position:chr3:59208736-59208532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr3:56455-56653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:242-452
               
               
               Cow position:chr3:17957387-17957183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-452
               
               
               Cow position:chr3:56102358-56102154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:242-453
               
               
               Cow position:chr3:50258938-50259154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 186

               
               
               Conread position:242-458
               
               
               Cow position:chr3:4031892-4031678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr3:3985249-3985039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr3:71430285-71430502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 207

               
               
               Conread position:242-482
               
               
               Cow position:chr3:53790615-53790858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:242-490
               
               
               Cow position:chr3:28898300-28898550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:242-490
               
               
               Cow position:chr3:42359237-42358992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-491
               
               
               Cow position:chr3:81033849-81034100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:242-495
               
               
               Cow position:chr3:74601033-74600792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):244, 84

               
               
               Conread position:242-497
               
               
               Cow position:chr3:55970428-55970178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-498
               
               
               Cow position:chr3:58968978-58969223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:242-502
               
               
               Cow position:chr3:31781201-31780944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-502
               
               
               Cow position:chr3:78077111-78076858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-504
               
               
               Cow position:chr3:22924488-22924738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:242-508
               
               
               Cow position:chr3:80072048-80071777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 187

               
               
               Conread position:242-516
               
               
               Cow position:chr3:31903192-31903456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-521
               
               
               Cow position:chr3:12323996-12323715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:242-521
               
               
               Cow position:chr3:15080824-15081092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:242-524
               
               
               Cow position:chr3:53150250-53149970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 76

               
               
               Conread position:242-528
               
               
               Cow position:chr3:54495990-54495703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-532
               
               
               Cow position:chr3:55189835-55190109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 48

               
               
               Conread position:242-536
               
               
               Cow position:chr3:16380651-16380945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr3:56697866-56697571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-545
               
               
               Cow position:chr3:53221935-53221651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-546
               
               
               Cow position:chr3:18067057-18066756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:242-547
               
               
               Cow position:chr3:28908282-28908582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 30

               
               
               Conread position:242-552
               
               
               Cow position:chr3:68145920-68146208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-553
               
               
               Cow position:chr3:54782095-54782395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 100

               
               
               Conread position:242-558
               
               
               Cow position:chr3:73393359-73393669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:242-569
               
               
               Cow position:chr3:7959689-7960013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:242-570
               
               
               Cow position:chr3:13517237-13517558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-570
               
               
               Cow position:chr3:16004068-16004386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr3:46901119-46900784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:242-579
               
               
               Cow position:chr3:4461570-4461898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:242-582
               
               
               Cow position:chr3:21341040-21341377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:242-591
               
               
               Cow position:chr3:72676014-72675665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 270

               
               
               Conread position:242-591
               
               
               Cow position:chr3:75727662-75728012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-598
               
               
               Cow position:chr3:48241538-48241191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 84

               
               
               Conread position:242-602
               
               
               Cow position:chr3:57553929-57554277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:242-603
               
               
               Cow position:chr3:31047029-31047375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-605
               
               
               Cow position:chr3:59000830-59001178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 46

               
               
               Conread position:242-612
               
               
               Cow position:chr3:46128043-46128414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-612
               
               
               Cow position:chr3:68259816-68259442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-614
               
               
               Cow position:chr3:50768604-50768229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 181

               
               
               Conread position:242-617
               
               
               Cow position:chr3:2506554-2506928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 192

               
               
               Conread position:242-620
               
               
               Cow position:chr3:61278837-61278463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:242-621
               
               
               Cow position:chr3:55272125-55272485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr3:66887097-66887477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr3:69750780-69751154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 55

               
               
               Conread position:242-621
               
               
               Cow position:chr3:80564885-80564501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 128

               
               
               Conread position:242-623
               
               
               Cow position:chr3:6689923-6689540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 228

               
               
               Conread position:242-623
               
               
               Cow position:chr3:49327863-49327492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr3:58383888-58383507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 22

               
               
               Conread position:242-623
               
               
               Cow position:chr3:66609921-66610294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 114

               
               
               Conread position:242-623
               
               
               Cow position:chr3:79208076-79208443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:242-624
               
               
               Cow position:chr3:15954165-15954532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr3:36122270-36121887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr3:43463364-43463745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr3:44622963-44623367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 133

               
               
               Conread position:242-624
               
               
               Cow position:chr3:64010901-64011276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 56

               
               
               Conread position:242-624
               
               
               Cow position:chr3:65236947-65236557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 127

               
               
               Conread position:242-624
               
               
               Cow position:chr3:67929339-67929727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:242-625
               
               
               Cow position:chr3:1035183-1034799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:3164573-3164949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:242-625
               
               
               Cow position:chr3:14889395-14889011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:15052030-15052384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:19884548-19884165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 153

               
               
               Conread position:242-625
               
               
               Cow position:chr3:26741778-26742165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 296

               
               
               Conread position:242-625
               
               
               Cow position:chr3:30614860-30615236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:242-625
               
               
               Cow position:chr3:31147569-31147185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:44335480-44335098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:45312971-45312595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:242-625
               
               
               Cow position:chr3:49906937-49907323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:53879170-53879554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:242-625
               
               
               Cow position:chr3:65413358-65413748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 91

               
               
               Conread position:242-625
               
               
               Cow position:chr3:66284086-66283700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 238

               
               
               Conread position:242-625
               
               
               Cow position:chr3:69344895-69345282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr3:69486632-69486248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:72173920-72174304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr3:72391007-72390626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:242-625
               
               
               Cow position:chr3:75771044-75771423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:243-385
               
               
               Cow position:chr3:23105445-23105583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:243-410
               
               
               Cow position:chr3:12705625-12705801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:243-420
               
               
               Cow position:chr3:13507385-13507209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:243-425
               
               
               Cow position:chr3:55835904-55836086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-452
               
               
               Cow position:chr3:15158963-15158757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:243-458
               
               
               Cow position:chr3:39969945-39970162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:243-543
               
               
               Cow position:chr3:40689032-40689328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 169

               
               
               Conread position:243-546
               
               
               Cow position:chr3:49461009-49461315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:243-619
               
               
               Cow position:chr3:56059728-56059335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:243-621
               
               
               Cow position:chr3:75711232-75710860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 125

               
               
               Conread position:243-622
               
               
               Cow position:chr3:62826698-62827066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:243-624
               
               
               Cow position:chr3:52225514-52225132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr3:2483367-2483001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:243-625
               
               
               Cow position:chr3:7245013-7245397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-446
               
               
               Cow position:chr3:32585072-32584880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:244-547
               
               
               Cow position:chr3:83815870-83816179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 58

               
               
               Conread position:244-570
               
               
               Cow position:chr3:64198405-64198079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 207

               
               
               Conread position:244-621
               
               
               Cow position:chr3:45647597-45647203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 22

               
               
               Conread position:244-623
               
               
               Cow position:chr3:9641485-9641093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 115

               
               
               Conread position:244-623
               
               
               Cow position:chr3:70565818-70566193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:244-624
               
               
               Cow position:chr3:73708967-73708598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:244-625
               
               
               Cow position:chr3:26219132-26219517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:244-625
               
               
               Cow position:chr3:40194964-40194582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-349
               
               
               Cow position:chr3:22232733-22232837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-349
               
               
               Cow position:chr3:67930264-67930367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-367
               
               
               Cow position:chr3:38828687-38828563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:245-371
               
               
               Cow position:chr3:27697058-27697186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-414
               
               
               Cow position:chr3:74878670-74878835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:245-417
               
               
               Cow position:chr3:11711880-11711704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:245-426
               
               
               Cow position:chr3:8604095-8604272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:245-447
               
               
               Cow position:chr3:42588276-42588070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:245-448
               
               
               Cow position:chr3:75158278-75158085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:245-449
               
               
               Cow position:chr3:77365379-77365575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:245-452
               
               
               Cow position:chr3:52863265-52863467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:245-452
               
               
               Cow position:chr3:78945916-78946123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):175, 43

               
               
               Conread position:245-454
               
               
               Cow position:chr3:8393270-8393060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:245-455
               
               
               Cow position:chr3:73467542-73467332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:245-458
               
               
               Cow position:chr3:56704625-56704827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr3:14601793-14602004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:245-459
               
               
               Cow position:chr3:51609740-51609525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-468
               
               
               Cow position:chr3:45648051-45647835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:245-512
               
               
               Cow position:chr3:61857422-61857152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-579
               
               
               Cow position:chr3:29891493-29891821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 143

               
               
               Conread position:245-619
               
               
               Cow position:chr3:18393469-18393833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 105

               
               
               Conread position:245-619
               
               
               Cow position:chr3:34270834-34270484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:245-619
               
               
               Cow position:chr3:59630583-59630957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:245-621
               
               
               Cow position:chr3:2903379-2903750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 48

               
               
               Conread position:245-621
               
               
               Cow position:chr3:82461097-82460713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:245-623
               
               
               Cow position:chr3:7678587-7678207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:245-623
               
               
               Cow position:chr3:65969080-65968700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:245-623
               
               
               Cow position:chr3:80081904-80082272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr3:14552795-14552424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 21

               
               
               Conread position:245-624
               
               
               Cow position:chr3:41367069-41367438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 19

               
               
               Conread position:245-624
               
               
               Cow position:chr3:73764276-73764635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:245-625
               
               
               Cow position:chr3:13721758-13722140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 258

               
               
               Conread position:245-625
               
               
               Cow position:chr3:48296628-48296248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 96

               
               
               Conread position:245-625
               
               
               Cow position:chr3:55085258-55085646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:246-399
               
               
               Cow position:chr3:56301426-56301579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-433
               
               
               Cow position:chr3:23270016-23269837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:246-459
               
               
               Cow position:chr3:18855013-18854802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:246-471
               
               
               Cow position:chr3:19198592-19198378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:246-561
               
               
               Cow position:chr3:8717170-8716854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:246-624
               
               
               Cow position:chr3:79902424-79902047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:247-384
               
               
               Cow position:chr3:25945001-25944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-407
               
               
               Cow position:chr3:83201607-83201767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:136
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-418
               
               
               Cow position:chr3:55947499-55947325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-438
               
               
               Cow position:chr3:13301931-13302126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:247-452
               
               
               Cow position:chr3:13329862-13330056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:247-462
               
               
               Cow position:chr3:53739269-53739487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:247-470
               
               
               Cow position:chr3:2216282-2216058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:247-485
               
               
               Cow position:chr3:53113090-53112851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:247-488
               
               
               Cow position:chr3:57754560-57754800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:247-498
               
               
               Cow position:chr3:54903492-54903244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 172

               
               
               Conread position:247-521
               
               
               Cow position:chr3:61361323-61361064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-533
               
               
               Cow position:chr3:5100850-5101125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:247-536
               
               
               Cow position:chr3:10347272-10346979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 98

               
               
               Conread position:247-562
               
               
               Cow position:chr3:74500155-74499846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 209

               
               
               Conread position:247-618
               
               
               Cow position:chr3:53384367-53384733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:247-623
               
               
               Cow position:chr3:24351041-24350675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:247-623
               
               
               Cow position:chr3:79220771-79220393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:247-624
               
               
               Cow position:chr3:20129862-20129492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-624
               
               
               Cow position:chr3:31419619-31419240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:247-624
               
               
               Cow position:chr3:33698646-33698269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 224

               
               
               Conread position:247-624
               
               
               Cow position:chr3:42423416-42423790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:247-624
               
               
               Cow position:chr3:49650303-49649925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 179

               
               
               Conread position:247-624
               
               
               Cow position:chr3:51012615-51012994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:247-624
               
               
               Cow position:chr3:52017685-52017304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:247-624
               
               
               Cow position:chr3:79591965-79592344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 224

               
               
               Conread position:247-625
               
               
               Cow position:chr3:11254242-11254603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 50

               
               
               Conread position:248-403
               
               
               Cow position:chr3:17447693-17447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:248-523
               
               
               Cow position:chr3:65020252-65019977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:248-624
               
               
               Cow position:chr3:36656855-36657229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:249-446
               
               
               Cow position:chr3:5374249-5374057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:249-625
               
               
               Cow position:chr3:2036214-2035842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 99

               
               
               Conread position:250-385
               
               
               Cow position:chr3:20841941-20842079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:250-421
               
               
               Cow position:chr3:48578748-48578588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:250-508
               
               
               Cow position:chr3:13577273-13577537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:250-546
               
               
               Cow position:chr3:35283180-35283463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:250-621
               
               
               Cow position:chr3:59474035-59473662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 194

               
               
               Conread position:250-623
               
               
               Cow position:chr3:9843501-9843119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 173

               
               
               Conread position:250-623
               
               
               Cow position:chr3:26920823-26920438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 173

               
               
               Conread position:251-459
               
               
               Cow position:chr3:19006576-19006376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:252-403
               
               
               Cow position:chr3:78067221-78067373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:252-448
               
               
               Cow position:chr3:34392185-34392376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):108, 72

               
               
               Conread position:252-457
               
               
               Cow position:chr3:23876907-23876709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:252-621
               
               
               Cow position:chr3:16656564-16656920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:253-389
               
               
               Cow position:chr3:5082727-5082864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:254-590
               
               
               Cow position:chr3:5851012-5851349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 113

               
               
               Conread position:254-621
               
               
               Cow position:chr3:48530557-48530185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:255-372
               
               
               Cow position:chr3:55712340-55712221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:258-396
               
               
               Cow position:chr3:15506357-15506219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-415
               
               
               Cow position:chr3:12563384-12563231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:259-404
               
               
               Cow position:chr3:79196475-79196614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:260-621
               
               
               Cow position:chr3:61678598-61678236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:260-623
               
               
               Cow position:chr3:8556881-8557236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:262-623
               
               
               Cow position:chr3:77496723-77496362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 216

               
               
               Conread position:263-540
               
               
               Cow position:chr3:53428994-53429259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:264-393
               
               
               Cow position:chr3:22734375-22734500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:265-427
               
               
               Cow position:chr3:52608086-52607924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:140
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-622
               
               
               Cow position:chr3:37485879-37486244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 129

               
               
               Conread position:266-427
               
               
               Cow position:chr3:56523605-56523760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:268-369
               
               
               Cow position:chr3:14800934-14801035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-382
               
               
               Cow position:chr3:6182305-6182417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:270-392
               
               
               Cow position:chr3:53084064-53084176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:270-607
               
               
               Cow position:chr3:80818622-80818290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 69

               
               
               Conread position:215-393
               
               
               Cow position:chr4:11218728-11218545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-459
               
               
               Cow position:chr4:51866963-51866717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:216-460
               
               
               Cow position:chr4:8801476-8801227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:217-623
               
               
               Cow position:chr4:7249610-7250006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:217-623
               
               
               Cow position:chr4:25879367-25878959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:218-623
               
               
               Cow position:chr4:57931880-57931462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:220-480
               
               
               Cow position:chr4:51830803-51830541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:222-393
               
               
               Cow position:chr4:36929280-36929104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:222-447
               
               
               Cow position:chr4:23445086-23445314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:222-625
               
               
               Cow position:chr4:27276582-27276984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:223-435
               
               
               Cow position:chr4:48321983-48321780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:223-565
               
               
               Cow position:chr4:11901600-11901941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:223-582
               
               
               Cow position:chr4:54501487-54501847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:223-619
               
               
               Cow position:chr4:53833008-53832616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 157

               
               
               Conread position:224-434
               
               
               Cow position:chr4:65538456-65538656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:224-532
               
               
               Cow position:chr4:52166892-52167213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:224-565
               
               
               Cow position:chr4:19238196-19237862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:224-598
               
               
               Cow position:chr4:39009926-39009549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:224-625
               
               
               Cow position:chr4:27546722-27546319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:225-624
               
               
               Cow position:chr4:56233639-56233252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:226-384
               
               
               Cow position:chr4:28543647-28543801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:226-438
               
               
               Cow position:chr4:49089747-49089540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:226-486
               
               
               Cow position:chr4:49158831-49159075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:226-593
               
               
               Cow position:chr4:12591255-12591618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:226-615
               
               
               Cow position:chr4:27540573-27540190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:226-623
               
               
               Cow position:chr4:22744278-22743900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:226-623
               
               
               Cow position:chr4:36893315-36892917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 248

               
               
               Conread position:226-623
               
               
               Cow position:chr4:49794626-49794237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:226-624
               
               
               Cow position:chr4:19584676-19584264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:226-624
               
               
               Cow position:chr4:34166018-34166406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:226-624
               
               
               Cow position:chr4:57555930-57555519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:227-346
               
               
               Cow position:chr4:34224071-34223953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:227-456
               
               
               Cow position:chr4:27530071-27529841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-582
               
               
               Cow position:chr4:53209195-53208841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:227-611
               
               
               Cow position:chr4:4084492-4084881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:227-622
               
               
               Cow position:chr4:59871439-59871061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:227-623
               
               
               Cow position:chr4:65891950-65891577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:228-429
               
               
               Cow position:chr4:26659254-26659060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:228-578
               
               
               Cow position:chr4:45589644-45589981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:228-623
               
               
               Cow position:chr4:11871954-11872352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:230-439
               
               
               Cow position:chr4:40410172-40410375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:230-445
               
               
               Cow position:chr4:63096122-63096336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:239-577
               
               
               Cow position:chr4:38952493-38952167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:239-621
               
               
               Cow position:chr4:33433323-33433692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:240-383
               
               
               Cow position:chr4:11496694-11496830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:240-395
               
               
               Cow position:chr4:29384281-29384430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:240-452
               
               
               Cow position:chr4:45114665-45114874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:240-471
               
               
               Cow position:chr4:39128474-39128244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:240-617
               
               
               Cow position:chr4:15871779-15872154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:240-623
               
               
               Cow position:chr4:45644368-45644750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 323

               
               
               Conread position:240-623
               
               
               Cow position:chr4:53545968-53545603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:240-624
               
               
               Cow position:chr4:22051533-22051908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 50

               
               
               Conread position:240-625
               
               
               Cow position:chr4:3687863-3687485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 88

               
               
               Conread position:240-625
               
               
               Cow position:chr4:22138291-22138675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 236

               
               
               Conread position:240-625
               
               
               Cow position:chr4:46526937-46526559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:241-620
               
               
               Cow position:chr4:51903543-51903165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:242-330
               
               
               Cow position:chr4:47047831-47047743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-354
               
               
               Cow position:chr4:54478969-54479078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:242-362
               
               
               Cow position:chr4:31506094-31506214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-366
               
               
               Cow position:chr4:32249311-32249438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-370
               
               
               Cow position:chr4:22713552-22713681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-374
               
               
               Cow position:chr4:42347343-42347478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr4:19408062-19408196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:242-383
               
               
               Cow position:chr4:11332030-11331890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 122

               
               
               Conread position:242-383
               
               
               Cow position:chr4:38944320-38944464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr4:20842861-20842720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr4:24810503-24810653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:242-398
               
               
               Cow position:chr4:60889526-60889685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-408
               
               
               Cow position:chr4:27687862-27687699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:242-412
               
               
               Cow position:chr4:36290566-36290379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr4:10379046-10378853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-423
               
               
               Cow position:chr4:23911645-23911828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:242-429
               
               
               Cow position:chr4:46370753-46370565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr4:54455405-54455589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr4:11897360-11897546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:242-436
               
               
               Cow position:chr4:18576836-18577029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:242-438
               
               
               Cow position:chr4:12676743-12676559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-440
               
               
               Cow position:chr4:42921915-42922102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:242-440
               
               
               Cow position:chr4:63965051-63965247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:242-441
               
               
               Cow position:chr4:33357872-33357674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:242-441
               
               
               Cow position:chr4:45367674-45367479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-443
               
               
               Cow position:chr4:19463433-19463229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr4:47290015-47289808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-447
               
               
               Cow position:chr4:31004469-31004667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-448
               
               
               Cow position:chr4:55395699-55395504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-449
               
               
               Cow position:chr4:33612421-33612628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr4:6793144-6792935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr4:19700044-19699833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr4:54667750-54667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:242-451
               
               
               Cow position:chr4:23847110-23847318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr4:34630831-34630635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr4:36547464-36547674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr4:1405469-1405272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:242-452
               
               
               Cow position:chr4:41185972-41186170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 8

               
               
               Conread position:242-452
               
               
               Cow position:chr4:44072828-44073038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr4:54930482-54930684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:242-452
               
               
               Cow position:chr4:63349537-63349744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:242-454
               
               
               Cow position:chr4:2141683-2141476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr4:26908521-26908736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-456
               
               
               Cow position:chr4:47348765-47348560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr4:19744823-19744615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr4:5999254-5999469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 8

               
               
               Conread position:242-459
               
               
               Cow position:chr4:25359548-25359330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:242-460
               
               
               Cow position:chr4:203204-203424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr4:20299211-20298993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 70

               
               
               Conread position:242-460
               
               
               Cow position:chr4:35981931-35981713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr4:56570745-56570529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:242-462
               
               
               Cow position:chr4:17052663-17052876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:242-463
               
               
               Cow position:chr4:4321062-4321285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-474
               
               
               Cow position:chr4:51728014-51727793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):181, 139

               
               
               Conread position:242-476
               
               
               Cow position:chr4:1925207-1925443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:242-492
               
               
               Cow position:chr4:23451157-23451404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:242-494
               
               
               Cow position:chr4:33421421-33421671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:242-495
               
               
               Cow position:chr4:55651846-55652101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-497
               
               
               Cow position:chr4:60370890-60371145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:242-499
               
               
               Cow position:chr4:23600115-23599858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:242-504
               
               
               Cow position:chr4:19597378-19597634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 103

               
               
               Conread position:242-507
               
               
               Cow position:chr4:19561622-19561372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:242-507
               
               
               Cow position:chr4:23060058-23060330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr4:12049183-12048924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):116, 130

               
               
               Conread position:242-508
               
               
               Cow position:chr4:21064067-21064325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr4:37180961-37181228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr4:37915400-37915653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-510
               
               
               Cow position:chr4:18105835-18106103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-520
               
               
               Cow position:chr4:10412313-10412045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 24

               
               
               Conread position:242-523
               
               
               Cow position:chr4:1823014-1822732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr4:45858-45577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr4:37470489-37470210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):227, 55

               
               
               Conread position:242-533
               
               
               Cow position:chr4:4277216-4277508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:242-533
               
               
               Cow position:chr4:10905527-10905805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr4:22215714-22216008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 166

               
               
               Conread position:242-546
               
               
               Cow position:chr4:17111938-17112240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:242-552
               
               
               Cow position:chr4:480067-480375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-553
               
               
               Cow position:chr4:43909681-43909402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:242-555
               
               
               Cow position:chr4:29568873-29569187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-557
               
               
               Cow position:chr4:11671392-11671081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-558
               
               
               Cow position:chr4:24744471-24744789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 141

               
               
               Conread position:242-563
               
               
               Cow position:chr4:21391875-21392175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-566
               
               
               Cow position:chr4:7552-7880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:242-567
               
               
               Cow position:chr4:36841222-36840897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 231

               
               
               Conread position:242-567
               
               
               Cow position:chr4:46058814-46059123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 92

               
               
               Conread position:242-568
               
               
               Cow position:chr4:44782311-44781991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 118

               
               
               Conread position:242-574
               
               
               Cow position:chr4:18095732-18096049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 178

               
               
               Conread position:242-580
               
               
               Cow position:chr4:21064973-21064643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 29

               
               
               Conread position:242-587
               
               
               Cow position:chr4:6466046-6465701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 207

               
               
               Conread position:242-587
               
               
               Cow position:chr4:68387729-68387392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-590
               
               
               Cow position:chr4:69305588-69305264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):344, 17

               
               
               Conread position:242-592
               
               
               Cow position:chr4:63459273-63459623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 182

               
               
               Conread position:242-600
               
               
               Cow position:chr4:15500559-15500918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-604
               
               
               Cow position:chr4:21531708-21532049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 12

               
               
               Conread position:242-610
               
               
               Cow position:chr4:40218715-40218351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:242-619
               
               
               Cow position:chr4:18335047-18335424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:242-620
               
               
               Cow position:chr4:13693736-13694104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr4:534183-533809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 242

               
               
               Conread position:242-621
               
               
               Cow position:chr4:14153030-14152636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr4:17818858-17819236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 322

               
               
               Conread position:242-621
               
               
               Cow position:chr4:23646908-23647271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:242-621
               
               
               Cow position:chr4:33097038-33097391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr4:54191026-54190671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr4:65919551-65919186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr4:3388485-3388124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-623
               
               
               Cow position:chr4:17474377-17473983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:242-623
               
               
               Cow position:chr4:31136689-31136315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 102

               
               
               Conread position:242-623
               
               
               Cow position:chr4:34209969-34209596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:242-623
               
               
               Cow position:chr4:38935294-38934947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr4:43369914-43370294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:242-623
               
               
               Cow position:chr4:51898945-51898564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 311

               
               
               Conread position:242-623
               
               
               Cow position:chr4:53999571-53999959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:242-623
               
               
               Cow position:chr4:61897597-61897971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:242-623
               
               
               Cow position:chr4:66112135-66112512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr4:22101322-22101704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 176

               
               
               Conread position:242-624
               
               
               Cow position:chr4:41301052-41301455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr4:61972523-61972915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 217

               
               
               Conread position:242-625
               
               
               Cow position:chr4:1237178-1237550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr4:6862301-6862688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr4:17091063-17091443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:242-625
               
               
               Cow position:chr4:22073377-22073744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:242-625
               
               
               Cow position:chr4:22086037-22086421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr4:25972835-25972452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:242-625
               
               
               Cow position:chr4:36489753-36490128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr4:38584780-38584394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr4:38864951-38864568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:242-625
               
               
               Cow position:chr4:41602785-41602423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:242-625
               
               
               Cow position:chr4:53316137-53316520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:242-625
               
               
               Cow position:chr4:59383562-59383948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr4:61816499-61816887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 76

               
               
               Conread position:243-380
               
               
               Cow position:chr4:17774416-17774546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:243-429
               
               
               Cow position:chr4:58881026-58881211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:243-459
               
               
               Cow position:chr4:41867377-41867169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:243-581
               
               
               Cow position:chr4:17124357-17124687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:243-614
               
               
               Cow position:chr4:49212777-49213148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:243-623
               
               
               Cow position:chr4:20327774-20328152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:243-623
               
               
               Cow position:chr4:27292019-27292399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 134

               
               
               Conread position:243-623
               
               
               Cow position:chr4:66918847-66918454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:243-624
               
               
               Cow position:chr4:20139580-20139967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:243-625
               
               
               Cow position:chr4:3171209-3170835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:243-625
               
               
               Cow position:chr4:14470634-14471009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:244-359
               
               
               Cow position:chr4:34022651-34022766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-372
               
               
               Cow position:chr4:46552384-46552508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr4:28839562-28839418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:244-474
               
               
               Cow position:chr4:12030783-12030549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 153

               
               
               Conread position:244-525
               
               
               Cow position:chr4:62951142-62950861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 205

               
               
               Conread position:244-594
               
               
               Cow position:chr4:12903754-12903407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:244-621
               
               
               Cow position:chr4:18547623-18547253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 152

               
               
               Conread position:244-621
               
               
               Cow position:chr4:61391268-61391636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 133

               
               
               Conread position:244-625
               
               
               Cow position:chr4:11640679-11641059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:244-625
               
               
               Cow position:chr4:37704202-37703825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:245-384
               
               
               Cow position:chr4:13974034-13974172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:245-390
               
               
               Cow position:chr4:51769046-51768906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:245-394
               
               
               Cow position:chr4:36724973-36724832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-405
               
               
               Cow position:chr4:43749873-43750033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-422
               
               
               Cow position:chr4:30791906-30791725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:245-430
               
               
               Cow position:chr4:21232939-21233117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:245-448
               
               
               Cow position:chr4:32726161-32725960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:245-450
               
               
               Cow position:chr4:43495837-43495636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:245-450
               
               
               Cow position:chr4:46591600-46591396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 172

               
               
               Conread position:245-451
               
               
               Cow position:chr4:43894876-43895070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:245-456
               
               
               Cow position:chr4:11021719-11021923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:245-467
               
               
               Cow position:chr4:2893962-2893741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:245-475
               
               
               Cow position:chr4:19582682-19582907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):184, 96

               
               
               Conread position:245-507
               
               
               Cow position:chr4:37935349-37935604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:245-516
               
               
               Cow position:chr4:22010130-22010390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-529
               
               
               Cow position:chr4:48137846-48137569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:245-612
               
               
               Cow position:chr4:15283302-15282929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:245-613
               
               
               Cow position:chr4:10732158-10731790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:245-616
               
               
               Cow position:chr4:62771990-62772369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:245-619
               
               
               Cow position:chr4:66256622-66256252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:245-620
               
               
               Cow position:chr4:52748523-52748891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 111

               
               
               Conread position:245-623
               
               
               Cow position:chr4:19316067-19316428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):327, 65

               
               
               Conread position:245-623
               
               
               Cow position:chr4:19558654-19558282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:245-623
               
               
               Cow position:chr4:21588665-21589045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:245-624
               
               
               Cow position:chr4:22236545-22236915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:245-624
               
               
               Cow position:chr4:67445082-67444705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:246-348
               
               
               Cow position:chr4:16881429-16881531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-384
               
               
               Cow position:chr4:29106840-29106699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:246-426
               
               
               Cow position:chr4:43740458-43740280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:246-570
               
               
               Cow position:chr4:14513304-14513622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:246-570
               
               
               Cow position:chr4:58248335-58248026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-621
               
               
               Cow position:chr4:4319213-4319578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:246-623
               
               
               Cow position:chr4:42673108-42672732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:246-624
               
               
               Cow position:chr4:285583-285230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:247-383
               
               
               Cow position:chr4:29238103-29238242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-414
               
               
               Cow position:chr4:25356374-25356536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:247-417
               
               
               Cow position:chr4:8704919-8704751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:247-430
               
               
               Cow position:chr4:19322149-19322325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:247-437
               
               
               Cow position:chr4:43762984-43762788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:247-442
               
               
               Cow position:chr4:27664945-27664747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-452
               
               
               Cow position:chr4:62570751-62570547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:247-497
               
               
               Cow position:chr4:17660258-17660516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 221

               
               
               Conread position:247-499
               
               
               Cow position:chr4:38330271-38330523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:247-528
               
               
               Cow position:chr4:60897343-60897617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:247-579
               
               
               Cow position:chr4:41599256-41598921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-594
               
               
               Cow position:chr4:23555190-23554844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:247-621
               
               
               Cow position:chr4:15905031-15904671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:247-622
               
               
               Cow position:chr4:11201752-11201382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:247-623
               
               
               Cow position:chr4:3475560-3475173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 39

               
               
               Conread position:247-623
               
               
               Cow position:chr4:5610138-5610508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:247-623
               
               
               Cow position:chr4:51851139-51850760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 256

               
               
               Conread position:247-624
               
               
               Cow position:chr4:26163040-26163411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:247-625
               
               
               Cow position:chr4:15635516-15635884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 55

               
               
               Conread position:248-380
               
               
               Cow position:chr4:43515659-43515526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:248-412
               
               
               Cow position:chr4:44902368-44902215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:248-418
               
               
               Cow position:chr4:56435740-56435571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:248-623
               
               
               Cow position:chr4:16799256-16799626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:248-624
               
               
               Cow position:chr4:561333-560963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:249-416
               
               
               Cow position:chr4:41907861-41908024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:249-433
               
               
               Cow position:chr4:12127705-12127893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:250-406
               
               
               Cow position:chr4:34924759-34924915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:250-621
               
               
               Cow position:chr4:64040031-64039682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:251-404
               
               
               Cow position:chr4:59277547-59277700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:252-366
               
               
               Cow position:chr4:38887208-38887323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-459
               
               
               Cow position:chr4:50203682-50203472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-468
               
               
               Cow position:chr4:620222-620436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:252-542
               
               
               Cow position:chr4:4085193-4085487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:252-623
               
               
               Cow position:chr4:37619959-37620332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:253-452
               
               
               Cow position:chr4:51739782-51739971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:254-443
               
               
               Cow position:chr4:2536757-2536574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:254-624
               
               
               Cow position:chr4:64072423-64072794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 170

               
               
               Conread position:254-624
               
               
               Cow position:chr4:67599811-67600162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:255-621
               
               
               Cow position:chr4:52016921-52017283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:256-367
               
               
               Cow position:chr4:45574930-45574818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:256-444
               
               
               Cow position:chr4:13141284-13141472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 169

               
               
               Conread position:258-359
               
               
               Cow position:chr4:3421550-3421448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:258-458
               
               
               Cow position:chr4:33395773-33395962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:258-458
               
               
               Cow position:chr4:67408453-67408267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:258-573
               
               
               Cow position:chr4:3990701-3991010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:258-620
               
               
               Cow position:chr4:12004147-12003788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:260-452
               
               
               Cow position:chr4:58947990-58948184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:260-570
               
               
               Cow position:chr4:69406291-69405985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-623
               
               
               Cow position:chr4:7430243-7429881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 156

               
               
               Conread position:260-625
               
               
               Cow position:chr4:28836455-28836089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:264-447
               
               
               Cow position:chr4:10472139-10471960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:264-452
               
               
               Cow position:chr4:3251616-3251804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:264-461
               
               
               Cow position:chr4:3340867-3340674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:264-497
               
               
               Cow position:chr4:56514020-56514248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:264-619
               
               
               Cow position:chr4:19497336-19497682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:264-619
               
               
               Cow position:chr4:25197578-25197932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:264-624
               
               
               Cow position:chr4:18974349-18974002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:265-394
               
               
               Cow position:chr4:13608159-13608029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:266-391
               
               
               Cow position:chr4:1026311-1026436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:266-453
               
               
               Cow position:chr4:46550302-46550115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:266-520
               
               
               Cow position:chr4:48485918-48485657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:267-619
               
               
               Cow position:chr4:22842260-22841915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:270-438
               
               
               Cow position:chr4:41292066-41292234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-488
               
               
               Cow position:chr4:49424742-49424540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:270-546
               
               
               Cow position:chr4:26469556-26469283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 47

               
               
               Conread position:270-623
               
               
               Cow position:chr4:19438370-19438006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 74

               
               
               Conread position:270-623
               
               
               Cow position:chr4:23854106-23853760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:214-624
               
               
               Cow position:chr5:67932460-67932877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:215-367
               
               
               Cow position:chr5:39875124-39874972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:215-623
               
               
               Cow position:chr5:35145352-35144937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:215-625
               
               
               Cow position:chr5:37646075-37645657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:216-624
               
               
               Cow position:chr5:39094556-39094146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:217-373
               
               
               Cow position:chr5:47696445-47696599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:217-386
               
               
               Cow position:chr5:31222915-31223086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:221-415
               
               
               Cow position:chr5:57575766-57575567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:221-448
               
               
               Cow position:chr5:40387877-40388097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:221-570
               
               
               Cow position:chr5:57987504-57987150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:221-625
               
               
               Cow position:chr5:6575594-6575970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:223-447
               
               
               Cow position:chr5:3771843-3771616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:223-606
               
               
               Cow position:chr5:32696828-32697182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:223-625
               
               
               Cow position:chr5:55756430-55756847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 268

               
               
               Conread position:224-566
               
               
               Cow position:chr5:28927595-28927946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:224-580
               
               
               Cow position:chr5:44994047-44994408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:224-624
               
               
               Cow position:chr5:24349102-24348714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:224-625
               
               
               Cow position:chr5:58321706-58322119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:226-429
               
               
               Cow position:chr5:57271273-57271478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:226-431
               
               
               Cow position:chr5:26262684-26262888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 63

               
               
               Conread position:226-452
               
               
               Cow position:chr5:42744776-42744562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:226-503
               
               
               Cow position:chr5:50950546-50950267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 142

               
               
               Conread position:226-536
               
               
               Cow position:chr5:60715371-60715674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 97

               
               
               Conread position:226-596
               
               
               Cow position:chr5:40356873-40357269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 162

               
               
               Conread position:226-624
               
               
               Cow position:chr5:58856096-58855697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:227-377
               
               
               Cow position:chr5:46425865-46426011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:227-380
               
               
               Cow position:chr5:65967743-65967895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:227-524
               
               
               Cow position:chr5:50482873-50483169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:227-619
               
               
               Cow position:chr5:23140588-23140979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:227-624
               
               
               Cow position:chr5:32378839-32378462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):344, 36

               
               
               Conread position:228-445
               
               
               Cow position:chr5:71454613-71454824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:228-546
               
               
               Cow position:chr5:67913769-67913451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 220

               
               
               Conread position:228-621
               
               
               Cow position:chr5:15598248-15598637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 99

               
               
               Conread position:229-460
               
               
               Cow position:chr5:64176133-64176362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:230-565
               
               
               Cow position:chr5:75828752-75829077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:231-442
               
               
               Cow position:chr5:5257311-5257522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:235-621
               
               
               Cow position:chr5:45845717-45846095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:238-623
               
               
               Cow position:chr5:12672055-12672431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 92

               
               
               Conread position:239-386
               
               
               Cow position:chr5:71579149-71579005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:239-450
               
               
               Cow position:chr5:6683381-6683581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:239-459
               
               
               Cow position:chr5:55966905-55967125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-520
               
               
               Cow position:chr5:50533413-50533683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:239-623
               
               
               Cow position:chr5:24485463-24485815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:240-391
               
               
               Cow position:chr5:52668004-52667853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:240-406
               
               
               Cow position:chr5:57591666-57591501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:240-412
               
               
               Cow position:chr5:34561985-34561813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:146
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-438
               
               
               Cow position:chr5:740967-741170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:240-447
               
               
               Cow position:chr5:27353261-27353466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:240-459
               
               
               Cow position:chr5:458464-458230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:240-504
               
               
               Cow position:chr5:2288577-2288847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:240-504
               
               
               Cow position:chr5:62173646-62173386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 81

               
               
               Conread position:240-607
               
               
               Cow position:chr5:31020163-31020504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-622
               
               
               Cow position:chr5:21040000-21040379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:241-438
               
               
               Cow position:chr5:54111894-54111697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:241-448
               
               
               Cow position:chr5:48027492-48027288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 169

               
               
               Conread position:241-579
               
               
               Cow position:chr5:69099504-69099164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:241-624
               
               
               Cow position:chr5:3280899-3281274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-347
               
               
               Cow position:chr5:991437-991332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr5:7921429-7921536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr5:19294518-19294622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr5:72951812-72951703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-364
               
               
               Cow position:chr5:63865766-63865644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr5:42050521-42050392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-381
               
               
               Cow position:chr5:46512792-46512931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:122
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-383
               
               
               Cow position:chr5:30629188-30629324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr5:29980016-29980160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-392
               
               
               Cow position:chr5:62638878-62638730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr5:35231516-35231363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr5:48937376-48937528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr5:48009877-48010036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:242-422
               
               
               Cow position:chr5:50943176-50943360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-425
               
               
               Cow position:chr5:44446897-44447097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:242-430
               
               
               Cow position:chr5:60126342-60126160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr5:71158290-71158478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:242-439
               
               
               Cow position:chr5:56028557-56028752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-440
               
               
               Cow position:chr5:5848218-5848410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:242-440
               
               
               Cow position:chr5:49426355-49426554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr5:25495378-25495563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:242-443
               
               
               Cow position:chr5:18090695-18090501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:242-446
               
               
               Cow position:chr5:56070827-56070624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr5:32338995-32339208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:242-450
               
               
               Cow position:chr5:36855176-36854979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:242-451
               
               
               Cow position:chr5:24996252-24996458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr5:32963660-32963864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:242-452
               
               
               Cow position:chr5:45036992-45036785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:242-454
               
               
               Cow position:chr5:4032021-4032226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:242-454
               
               
               Cow position:chr5:20128025-20127817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:242-456
               
               
               Cow position:chr5:56433775-56433562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 181

               
               
               Conread position:242-458
               
               
               Cow position:chr5:11668213-11668419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:242-458
               
               
               Cow position:chr5:53835684-53835474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr5:48178706-48178918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr5:52000193-51999977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr5:58144630-58144848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:242-462
               
               
               Cow position:chr5:32956125-32956335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-462
               
               
               Cow position:chr5:59325864-59326073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:242-474
               
               
               Cow position:chr5:19278729-19278950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):207, 116

               
               
               Conread position:242-477
               
               
               Cow position:chr5:37366872-37366630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:242-482
               
               
               Cow position:chr5:51903275-51903032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-485
               
               
               Cow position:chr5:42064174-42063935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:242-496
               
               
               Cow position:chr5:12351819-12352061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-500
               
               
               Cow position:chr5:17999521-17999779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:242-507
               
               
               Cow position:chr5:31640391-31640139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr5:59443281-59443542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:242-517
               
               
               Cow position:chr5:72150218-72149951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 103

               
               
               Conread position:242-525
               
               
               Cow position:chr5:65941281-65941560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr5:18716161-18716442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 143

               
               
               Conread position:242-530
               
               
               Cow position:chr5:4797345-4797626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 87

               
               
               Conread position:242-541
               
               
               Cow position:chr5:42748128-42747838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:242-546
               
               
               Cow position:chr5:34916110-34915812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 98

               
               
               Conread position:242-552
               
               
               Cow position:chr5:27102823-27103127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:242-553
               
               
               Cow position:chr5:12727028-12726717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):64, 243

               
               
               Conread position:242-570
               
               
               Cow position:chr5:34288500-34288821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 70

               
               
               Conread position:242-582
               
               
               Cow position:chr5:46122379-46122694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 124

               
               
               Conread position:242-599
               
               
               Cow position:chr5:37190124-37190475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:242-602
               
               
               Cow position:chr5:53855669-53855317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:242-603
               
               
               Cow position:chr5:33792592-33792246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-607
               
               
               Cow position:chr5:44583157-44583504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 90

               
               
               Conread position:242-614
               
               
               Cow position:chr5:21617428-21617068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr5:49559140-49558761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:242-620
               
               
               Cow position:chr5:16509067-16508689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:242-621
               
               
               Cow position:chr5:7140137-7140488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:242-621
               
               
               Cow position:chr5:14314496-14314119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr5:21828837-21828452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 98

               
               
               Conread position:242-621
               
               
               Cow position:chr5:26377698-26378071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 60

               
               
               Conread position:242-621
               
               
               Cow position:chr5:27154994-27154619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:242-621
               
               
               Cow position:chr5:29828020-29827649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr5:30276668-30276298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 190

               
               
               Conread position:242-621
               
               
               Cow position:chr5:55176861-55176482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 181

               
               
               Conread position:242-621
               
               
               Cow position:chr5:55821345-55820977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 98

               
               
               Conread position:242-621
               
               
               Cow position:chr5:74643700-74644064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr5:6086587-6086971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 333

               
               
               Conread position:242-623
               
               
               Cow position:chr5:26467594-26467216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr5:31144818-31145182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 8

               
               
               Conread position:242-623
               
               
               Cow position:chr5:35826574-35826195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 231

               
               
               Conread position:242-623
               
               
               Cow position:chr5:47871071-47871451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 213

               
               
               Conread position:242-623
               
               
               Cow position:chr5:55942425-55942803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 107

               
               
               Conread position:242-623
               
               
               Cow position:chr5:57935138-57935511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 220

               
               
               Conread position:242-623
               
               
               Cow position:chr5:65776411-65776803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 240

               
               
               Conread position:242-624
               
               
               Cow position:chr5:16185058-16184685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr5:16206184-16206549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 126

               
               
               Conread position:242-624
               
               
               Cow position:chr5:21944368-21943970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr5:27015653-27015286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr5:29255213-29255596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr5:30816690-30816308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:242-624
               
               
               Cow position:chr5:31469611-31469981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-624
               
               
               Cow position:chr5:52165207-52165586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 182

               
               
               Conread position:242-624
               
               
               Cow position:chr5:65887035-65887421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 186

               
               
               Conread position:242-624
               
               
               Cow position:chr5:65932957-65933340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:242-624
               
               
               Cow position:chr5:66257609-66257241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr5:8179154-8178774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 189

               
               
               Conread position:242-625
               
               
               Cow position:chr5:10771832-10772213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr5:14542477-14542859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 206

               
               
               Conread position:242-625
               
               
               Cow position:chr5:18117975-18118358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:242-625
               
               
               Cow position:chr5:20270756-20270372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr5:37289177-37288801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:242-625
               
               
               Cow position:chr5:41067997-41067616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-625
               
               
               Cow position:chr5:41532194-41532583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 290

               
               
               Conread position:242-625
               
               
               Cow position:chr5:41547033-41547413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-625
               
               
               Cow position:chr5:50622247-50622629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 87

               
               
               Conread position:242-625
               
               
               Cow position:chr5:51309943-51309559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr5:54869390-54869009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-625
               
               
               Cow position:chr5:55685538-55685154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr5:55723529-55723146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 209

               
               
               Conread position:242-625
               
               
               Cow position:chr5:66815599-66815988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:242-625
               
               
               Cow position:chr5:72314481-72314862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 153

               
               
               Conread position:242-625
               
               
               Cow position:chr5:75754122-75754506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-353
               
               
               Cow position:chr5:7755592-7755702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-380
               
               
               Cow position:chr5:14629843-14629979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:243-424
               
               
               Cow position:chr5:7044737-7044918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):171, 164

               
               
               Conread position:243-499
               
               
               Cow position:chr5:53201145-53201402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-507
               
               
               Cow position:chr5:72035116-72035375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:243-528
               
               
               Cow position:chr5:5111105-5111388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:243-534
               
               
               Cow position:chr5:68718839-68718573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:243-536
               
               
               Cow position:chr5:25035273-25035582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):114, 95

               
               
               Conread position:243-564
               
               
               Cow position:chr5:51357530-51357849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:243-622
               
               
               Cow position:chr5:46668065-46667689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:243-623
               
               
               Cow position:chr5:29903548-29903928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:243-623
               
               
               Cow position:chr5:47601789-47601405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 121

               
               
               Conread position:243-624
               
               
               Cow position:chr5:45999050-45999428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:244-398
               
               
               Cow position:chr5:57576185-57576032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:244-458
               
               
               Cow position:chr5:30253710-30253502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 101

               
               
               Conread position:244-462
               
               
               Cow position:chr5:14746916-14746701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:244-520
               
               
               Cow position:chr5:35174330-35174607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr5:50821751-50821384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:245-403
               
               
               Cow position:chr5:17644687-17644842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:245-424
               
               
               Cow position:chr5:51053682-51053855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:245-427
               
               
               Cow position:chr5:40039802-40039981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr5:56518242-56518421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-430
               
               
               Cow position:chr5:35235741-35235922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:245-444
               
               
               Cow position:chr5:56820294-56820487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-448
               
               
               Cow position:chr5:8994599-8994797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:245-476
               
               
               Cow position:chr5:41165054-41164831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:245-504
               
               
               Cow position:chr5:21964255-21963992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:245-506
               
               
               Cow position:chr5:43474815-43474565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-541
               
               
               Cow position:chr5:60520130-60519851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-546
               
               
               Cow position:chr5:26990360-26990069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 86

               
               
               Conread position:245-591
               
               
               Cow position:chr5:23856194-23856537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:245-591
               
               
               Cow position:chr5:47317003-47317342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:245-612
               
               
               Cow position:chr5:14550613-14550982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 305

               
               
               Conread position:245-621
               
               
               Cow position:chr5:6045259-6044882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr5:8024227-8024596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):217, 95

               
               
               Conread position:245-623
               
               
               Cow position:chr5:34463616-34463990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-623
               
               
               Cow position:chr5:44848052-44848420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:245-624
               
               
               Cow position:chr5:54713763-54714149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:245-625
               
               
               Cow position:chr5:12873711-12873339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 62

               
               
               Conread position:245-625
               
               
               Cow position:chr5:56467668-56467297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:246-450
               
               
               Cow position:chr5:72006887-72007086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:246-494
               
               
               Cow position:chr5:28017115-28016882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:246-519
               
               
               Cow position:chr5:63964199-63964483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-623
               
               
               Cow position:chr5:61840159-61839782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:246-624
               
               
               Cow position:chr5:33414442-33414812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:247-367
               
               
               Cow position:chr5:35459330-35459445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-380
               
               
               Cow position:chr5:54060243-54060110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:247-383
               
               
               Cow position:chr5:24616149-24616289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-390
               
               
               Cow position:chr5:33937186-33937046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:247-450
               
               
               Cow position:chr5:15426495-15426295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:247-450
               
               
               Cow position:chr5:28324320-28324112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:247-452
               
               
               Cow position:chr5:37814588-37814388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:247-456
               
               
               Cow position:chr5:32975585-32975790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:247-462
               
               
               Cow position:chr5:46322844-46323057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:247-467
               
               
               Cow position:chr5:61600385-61600162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-479
               
               
               Cow position:chr5:58229671-58229441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:247-506
               
               
               Cow position:chr5:63917444-63917696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-557
               
               
               Cow position:chr5:47313442-47313133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:247-569
               
               
               Cow position:chr5:32140743-32141051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 21

               
               
               Conread position:247-570
               
               
               Cow position:chr5:9894163-9894477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 78

               
               
               Conread position:247-616
               
               
               Cow position:chr5:3204803-3204440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:247-621
               
               
               Cow position:chr5:64321718-64321347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:247-623
               
               
               Cow position:chr5:52040349-52040716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:247-624
               
               
               Cow position:chr5:46103974-46104354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 77

               
               
               Conread position:247-625
               
               
               Cow position:chr5:27403270-27403648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 227

               
               
               Conread position:247-625
               
               
               Cow position:chr5:28330367-28330731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:248-362
               
               
               Cow position:chr5:54750800-54750687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:248-448
               
               
               Cow position:chr5:16938041-16938239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):5, 98

               
               
               Conread position:248-448
               
               
               Cow position:chr5:64137219-64137020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:249-490
               
               
               Cow position:chr5:4506990-4507234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:249-621
               
               
               Cow position:chr5:14415743-14415368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:250-371
               
               
               Cow position:chr5:35247147-35247265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:250-447
               
               
               Cow position:chr5:22242811-22243015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 167

               
               
               Conread position:251-428
               
               
               Cow position:chr5:6572718-6572540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:251-457
               
               
               Cow position:chr5:30638896-30639090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:252-368
               
               
               Cow position:chr5:61049325-61049204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:252-426
               
               
               Cow position:chr5:29212905-29212739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:252-448
               
               
               Cow position:chr5:12709849-12709655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:252-456
               
               
               Cow position:chr5:59873443-59873645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:252-526
               
               
               Cow position:chr5:68604819-68604542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):196, 93

               
               
               Conread position:252-623
               
               
               Cow position:chr5:47888748-47889121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-625
               
               
               Cow position:chr5:50600015-50599663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:258-377
               
               
               Cow position:chr5:45397533-45397418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:258-452
               
               
               Cow position:chr5:24642771-24642957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:258-486
               
               
               Cow position:chr5:65601418-65601194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:258-536
               
               
               Cow position:chr5:15462670-15462406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:258-560
               
               
               Cow position:chr5:20783579-20783284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 92

               
               
               Conread position:258-623
               
               
               Cow position:chr5:54404936-54405301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:258-624
               
               
               Cow position:chr5:49821102-49820734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:260-624
               
               
               Cow position:chr5:56443239-56442875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 172

               
               
               Conread position:263-338
               
               
               Cow position:chr5:22667043-22666968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:76
               
               
               Alignm identity:70
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:263-452
               
               
               Cow position:chr5:24836996-24837175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:264-384
               
               
               Cow position:chr5:56014682-56014567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:264-623
               
               
               Cow position:chr5:19813266-19813626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 79

               
               
               Conread position:265-446
               
               
               Cow position:chr5:66297186-66297009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:266-508
               
               
               Cow position:chr5:23666311-23666549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):137, 133

               
               
               Conread position:266-619
               
               
               Cow position:chr5:15363841-15363491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:266-624
               
               
               Cow position:chr5:54875732-54876071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:270-590
               
               
               Cow position:chr5:73222633-73222329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:270-619
               
               
               Cow position:chr5:25231061-25231410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 206

               
               
               Conread position:270-623
               
               
               Cow position:chr5:39447587-39447940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:194-625
               
               
               Cow position:chr6:58074086-58073643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:215-450
               
               
               Cow position:chr6:7190102-7190338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:215-623
               
               
               Cow position:chr6:14839009-14839417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 201

               
               
               Conread position:216-381
               
               
               Cow position:chr6:9219291-9219123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:216-468
               
               
               Cow position:chr6:34251277-34251512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:216-579
               
               
               Cow position:chr6:47305356-47304980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:217-427
               
               
               Cow position:chr6:16191682-16191471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:217-452
               
               
               Cow position:chr6:14949464-14949702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:217-624
               
               
               Cow position:chr6:42565704-42565292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:217-625
               
               
               Cow position:chr6:5095532-5095944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:217-625
               
               
               Cow position:chr6:43789208-43789614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 236

               
               
               Conread position:222-437
               
               
               Cow position:chr6:38641504-38641292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:222-454
               
               
               Cow position:chr6:49685594-49685362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:223-394
               
               
               Cow position:chr6:11246772-11246601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:223-430
               
               
               Cow position:chr6:8788030-8788236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:223-622
               
               
               Cow position:chr6:11169707-11169317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:224-365
               
               
               Cow position:chr6:45388339-45388192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:224-430
               
               
               Cow position:chr6:66131315-66131109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:224-434
               
               
               Cow position:chr6:67456729-67456500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:224-441
               
               
               Cow position:chr6:54701546-54701330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:226-379
               
               
               Cow position:chr6:17313739-17313582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:226-438
               
               
               Cow position:chr6:7989412-7989620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:226-542
               
               
               Cow position:chr6:46558059-46557747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:226-623
               
               
               Cow position:chr6:9751048-9751443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 21

               
               
               Conread position:227-391
               
               
               Cow position:chr6:31847221-31847380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:227-413
               
               
               Cow position:chr6:5114042-5114228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:227-443
               
               
               Cow position:chr6:24515192-24515405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:227-446
               
               
               Cow position:chr6:17997311-17997530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:227-536
               
               
               Cow position:chr6:12500863-12500552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:227-623
               
               
               Cow position:chr6:6067690-6068080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:228-519
               
               
               Cow position:chr6:54368896-54369184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:228-570
               
               
               Cow position:chr6:15305579-15305250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:228-625
               
               
               Cow position:chr6:64721292-64720903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:230-471
               
               
               Cow position:chr6:9736648-9736879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:231-448
               
               
               Cow position:chr6:21110961-21110752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:237-448
               
               
               Cow position:chr6:47574895-47574689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:239-347
               
               
               Cow position:chr6:25615116-25615222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:239-430
               
               
               Cow position:chr6:48425333-48425520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:239-451
               
               
               Cow position:chr6:34031650-34031448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:239-508
               
               
               Cow position:chr6:40713512-40713775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:239-514
               
               
               Cow position:chr6:6264629-6264363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:239-623
               
               
               Cow position:chr6:2013007-2012631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 102

               
               
               Conread position:239-625
               
               
               Cow position:chr6:1783789-1784159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:239-625
               
               
               Cow position:chr6:28477167-28476773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:240-462
               
               
               Cow position:chr6:34475564-34475774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:240-618
               
               
               Cow position:chr6:40450751-40450388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:240-619
               
               
               Cow position:chr6:67214732-67214354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 131

               
               
               Conread position:240-622
               
               
               Cow position:chr6:8637262-8636885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:240-624
               
               
               Cow position:chr6:36470579-36470960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:240-625
               
               
               Cow position:chr6:21004659-21004260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:241-349
               
               
               Cow position:chr6:10225653-10225761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-379
               
               
               Cow position:chr6:54036153-54036283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:242-361
               
               
               Cow position:chr6:4559319-4559438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:242-372
               
               
               Cow position:chr6:38609954-38609827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:242-386
               
               
               Cow position:chr6:61608496-61608352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-390
               
               
               Cow position:chr6:48112183-48112045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr6:64389026-64388876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:242-394
               
               
               Cow position:chr6:32987013-32987161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:242-404
               
               
               Cow position:chr6:65264553-65264708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:242-405
               
               
               Cow position:chr6:18904356-18904517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):153, 85

               
               
               Conread position:242-405
               
               
               Cow position:chr6:60819501-60819341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:242-407
               
               
               Cow position:chr6:1499626-1499462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:242-415
               
               
               Cow position:chr6:25008695-25008530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr6:53519638-53519808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:242-426
               
               
               Cow position:chr6:21456703-21456885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr6:63720180-63720004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr6:53731507-53731325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:242-442
               
               
               Cow position:chr6:53138936-53139140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-442
               
               
               Cow position:chr6:61137359-61137157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):166, 60

               
               
               Conread position:242-448
               
               
               Cow position:chr6:8966076-8965873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr6:48344317-48344111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr6:60442404-60442202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:242-449
               
               
               Cow position:chr6:15923014-15923215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr6:899305-899504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr6:10254224-10254022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:242-452
               
               
               Cow position:chr6:31564354-31564554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):173, 60

               
               
               Conread position:242-453
               
               
               Cow position:chr6:4383471-4383271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-453
               
               
               Cow position:chr6:38207506-38207717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 182

               
               
               Conread position:242-454
               
               
               Cow position:chr6:37149173-37148974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:242-456
               
               
               Cow position:chr6:51581270-51581484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:242-459
               
               
               Cow position:chr6:24657788-24658007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 156

               
               
               Conread position:242-459
               
               
               Cow position:chr6:32421125-32420907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr6:48572898-48573110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:242-459
               
               
               Cow position:chr6:63299047-63299258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):195, 55

               
               
               Conread position:242-460
               
               
               Cow position:chr6:38614801-38614595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-471
               
               
               Cow position:chr6:26915315-26915090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 95

               
               
               Conread position:242-474
               
               
               Cow position:chr6:50984210-50983965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:242-481
               
               
               Cow position:chr6:53711100-53710866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 60

               
               
               Conread position:242-485
               
               
               Cow position:chr6:30015877-30016121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-485
               
               
               Cow position:chr6:46627985-46628232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-490
               
               
               Cow position:chr6:64449377-64449133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:242-501
               
               
               Cow position:chr6:61515206-61515467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 104

               
               
               Conread position:242-507
               
               
               Cow position:chr6:2832889-2833151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:242-513
               
               
               Cow position:chr6:47150776-47150498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:242-517
               
               
               Cow position:chr6:57164412-57164141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:242-524
               
               
               Cow position:chr6:38218654-38218372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 21

               
               
               Conread position:242-543
               
               
               Cow position:chr6:43014191-43014493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr6:36196197-36195875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr6:54867499-54867180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:242-571
               
               
               Cow position:chr6:31526028-31525713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-582
               
               
               Cow position:chr6:62592569-62592911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-590
               
               
               Cow position:chr6:2547230-2546885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:242-593
               
               
               Cow position:chr6:31535586-31535920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:242-612
               
               
               Cow position:chr6:8195282-8194909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr6:51674898-51674524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 87

               
               
               Conread position:242-619
               
               
               Cow position:chr6:29210482-29210114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr6:42482018-42481641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-621
               
               
               Cow position:chr6:56079779-56080157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:242-621
               
               
               Cow position:chr6:65871015-65870636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 285

               
               
               Conread position:242-621
               
               
               Cow position:chr6:68339810-68340189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:242-623
               
               
               Cow position:chr6:11192482-11192842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr6:16411176-16410806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:242-623
               
               
               Cow position:chr6:17414464-17414845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:242-623
               
               
               Cow position:chr6:32287623-32287228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 177

               
               
               Conread position:242-623
               
               
               Cow position:chr6:44099072-44098696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:242-623
               
               
               Cow position:chr6:46465808-46465436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr6:49398629-49399009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 116

               
               
               Conread position:242-623
               
               
               Cow position:chr6:52478429-52478834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 191

               
               
               Conread position:242-624
               
               
               Cow position:chr6:2607600-2607221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr6:16700250-16699878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 120

               
               
               Conread position:242-624
               
               
               Cow position:chr6:17090584-17090194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 170

               
               
               Conread position:242-624
               
               
               Cow position:chr6:18961531-18961913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 133

               
               
               Conread position:242-624
               
               
               Cow position:chr6:29485071-29484719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr6:33302396-33302018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:242-624
               
               
               Cow position:chr6:56843139-56842767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:7137203-7137586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-625
               
               
               Cow position:chr6:9008626-9008993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:10332105-10332502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:242-625
               
               
               Cow position:chr6:10599103-10598735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:11868797-11869181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:12630010-12629624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:242-625
               
               
               Cow position:chr6:12662190-12662574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:19569797-19570175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:242-625
               
               
               Cow position:chr6:21712846-21712462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:23878915-23879303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 237

               
               
               Conread position:242-625
               
               
               Cow position:chr6:28066132-28065743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:31082027-31081656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:242-625
               
               
               Cow position:chr6:36652404-36652030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 101

               
               
               Conread position:242-625
               
               
               Cow position:chr6:46224547-46224929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):344, 60

               
               
               Conread position:242-625
               
               
               Cow position:chr6:46948952-46948568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr6:53542330-53542713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:243-384
               
               
               Cow position:chr6:45968731-45968873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-389
               
               
               Cow position:chr6:19264512-19264658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:243-427
               
               
               Cow position:chr6:16423683-16423503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:243-448
               
               
               Cow position:chr6:6460527-6460325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:243-591
               
               
               Cow position:chr6:10106006-10106360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:243-624
               
               
               Cow position:chr6:36928640-36928258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:243-625
               
               
               Cow position:chr6:50119802-50120180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:244-434
               
               
               Cow position:chr6:6400934-6400745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 76

               
               
               Conread position:244-470
               
               
               Cow position:chr6:20097981-20098203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:244-529
               
               
               Cow position:chr6:47520033-47519753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:244-533
               
               
               Cow position:chr6:56927185-56926895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr6:23695977-23695608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:244-622
               
               
               Cow position:chr6:46571100-46570735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr6:327218-327607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 213

               
               
               Conread position:245-393
               
               
               Cow position:chr6:12542951-12543095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-407
               
               
               Cow position:chr6:49604658-49604507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:245-425
               
               
               Cow position:chr6:14850732-14850908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:245-430
               
               
               Cow position:chr6:33277025-33276840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:245-435
               
               
               Cow position:chr6:416081-415891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 175

               
               
               Conread position:245-438
               
               
               Cow position:chr6:54864688-54864873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:245-450
               
               
               Cow position:chr6:7694366-7694572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 143

               
               
               Conread position:245-452
               
               
               Cow position:chr6:38441158-38440961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-456
               
               
               Cow position:chr6:46865607-46865824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:245-459
               
               
               Cow position:chr6:67950934-67950731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:245-460
               
               
               Cow position:chr6:130181-130393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:245-462
               
               
               Cow position:chr6:29239922-29239712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:245-463
               
               
               Cow position:chr6:54884928-54885145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:245-499
               
               
               Cow position:chr6:35471537-35471794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:245-606
               
               
               Cow position:chr6:8804548-8804918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 108

               
               
               Conread position:245-614
               
               
               Cow position:chr6:21311766-21312139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 231

               
               
               Conread position:245-615
               
               
               Cow position:chr6:61631628-61631997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:245-621
               
               
               Cow position:chr6:56849994-56849606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 85

               
               
               Conread position:245-623
               
               
               Cow position:chr6:16738002-16737629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:245-623
               
               
               Cow position:chr6:32210646-32211017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 115

               
               
               Conread position:245-623
               
               
               Cow position:chr6:62925015-62925392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:245-624
               
               
               Cow position:chr6:8562702-8562323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 332

               
               
               Conread position:245-624
               
               
               Cow position:chr6:46205998-46205625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 106

               
               
               Conread position:246-392
               
               
               Cow position:chr6:50020518-50020369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-415
               
               
               Cow position:chr6:1703799-1703630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-443
               
               
               Cow position:chr6:57405142-57405336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:246-446
               
               
               Cow position:chr6:55366335-55366538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:246-582
               
               
               Cow position:chr6:35842636-35842310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:246-624
               
               
               Cow position:chr6:40032174-40031800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 126

               
               
               Conread position:247-380
               
               
               Cow position:chr6:22254004-22254136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-393
               
               
               Cow position:chr6:58364031-58364174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:247-410
               
               
               Cow position:chr6:18968800-18968952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-411
               
               
               Cow position:chr6:9839150-9838982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:247-415
               
               
               Cow position:chr6:62855042-62854874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-436
               
               
               Cow position:chr6:20157311-20157120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 178

               
               
               Conread position:247-437
               
               
               Cow position:chr6:12092013-12092191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):186, 64

               
               
               Conread position:247-437
               
               
               Cow position:chr6:58732326-58732520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-457
               
               
               Cow position:chr6:20605916-20605708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr6:16746323-16746112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:247-459
               
               
               Cow position:chr6:60350315-60350527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-471
               
               
               Cow position:chr6:7103249-7103475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 197

               
               
               Conread position:247-471
               
               
               Cow position:chr6:61113737-61113510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-504
               
               
               Cow position:chr6:54365350-54365596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:247-506
               
               
               Cow position:chr6:50746967-50746702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 144

               
               
               Conread position:247-604
               
               
               Cow position:chr6:4864568-4864911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 84

               
               
               Conread position:247-623
               
               
               Cow position:chr6:445301-444936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 197

               
               
               Conread position:247-623
               
               
               Cow position:chr6:4468748-4468368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:247-623
               
               
               Cow position:chr6:24781576-24781961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 181

               
               
               Conread position:247-624
               
               
               Cow position:chr6:3978682-3979054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:247-624
               
               
               Cow position:chr6:43345463-43345847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 206

               
               
               Conread position:247-624
               
               
               Cow position:chr6:53178619-53178246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:248-427
               
               
               Cow position:chr6:52412840-52412659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 177

               
               
               Conread position:248-459
               
               
               Cow position:chr6:44194563-44194773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:250-395
               
               
               Cow position:chr6:35993563-35993413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:250-457
               
               
               Cow position:chr6:60239411-60239614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:250-579
               
               
               Cow position:chr6:35990256-35990574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 66

               
               
               Conread position:250-625
               
               
               Cow position:chr6:32121889-32121504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:251-452
               
               
               Cow position:chr6:15300842-15301038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:252-403
               
               
               Cow position:chr6:47355799-47355652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:252-430
               
               
               Cow position:chr6:46245342-46245522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:252-454
               
               
               Cow position:chr6:27110569-27110368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:253-529
               
               
               Cow position:chr6:19508466-19508729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):209, 55

               
               
               Conread position:253-623
               
               
               Cow position:chr6:13687839-13688209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 71

               
               
               Conread position:254-460
               
               
               Cow position:chr6:49002760-49002953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:257-343
               
               
               Cow position:chr6:58597534-58597620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:257-491
               
               
               Cow position:chr6:64436357-64436602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:258-377
               
               
               Cow position:chr6:16316277-16316160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:258-391
               
               
               Cow position:chr6:40834500-40834633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:258-407
               
               
               Cow position:chr6:37783389-37783238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:258-438
               
               
               Cow position:chr6:19695776-19695600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:258-445
               
               
               Cow position:chr6:59015589-59015776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:258-452
               
               
               Cow position:chr6:9452800-9452990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr6:68049406-68049208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:258-503
               
               
               Cow position:chr6:48281967-48281723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:258-511
               
               
               Cow position:chr6:34235467-34235714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):116, 12

               
               
               Conread position:258-624
               
               
               Cow position:chr6:18988182-18987827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:258-625
               
               
               Cow position:chr6:5302447-5302792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:260-622
               
               
               Cow position:chr6:35181291-35181637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:260-623
               
               
               Cow position:chr6:49410725-49411071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 13

               
               
               Conread position:260-625
               
               
               Cow position:chr6:58076197-58075828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:263-566
               
               
               Cow position:chr6:54140774-54140484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:264-415
               
               
               Cow position:chr6:47989148-47989002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:264-458
               
               
               Cow position:chr6:59301857-59302051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:264-621
               
               
               Cow position:chr6:24031342-24030985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 272

               
               
               Conread position:264-621
               
               
               Cow position:chr6:45690626-45690999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 160

               
               
               Conread position:265-625
               
               
               Cow position:chr6:28559386-28559043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 163

               
               
               Conread position:266-454
               
               
               Cow position:chr6:5445587-5445406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:266-479
               
               
               Cow position:chr6:54132778-54132571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:270-479
               
               
               Cow position:chr6:20329982-20329773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:271-447
               
               
               Cow position:chr6:31928221-31928060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:272-430
               
               
               Cow position:chr6:37603478-37603324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr7:29088478-29088319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:215-452
               
               
               Cow position:chr7:41445372-41445143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:216-427
               
               
               Cow position:chr7:32079469-32079265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:216-430
               
               
               Cow position:chr7:37372022-37371817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:216-460
               
               
               Cow position:chr7:63112758-63112998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:216-468
               
               
               Cow position:chr7:40008839-40008583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:217-624
               
               
               Cow position:chr7:19267351-19267760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:217-625
               
               
               Cow position:chr7:39164399-39164003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:220-534
               
               
               Cow position:chr7:35062154-35061838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:220-624
               
               
               Cow position:chr7:45158134-45157743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:221-407
               
               
               Cow position:chr7:32372872-32372685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:222-623
               
               
               Cow position:chr7:48020433-48020035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:223-349
               
               
               Cow position:chr7:58923409-58923276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:223-425
               
               
               Cow position:chr7:37697808-37697612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:223-452
               
               
               Cow position:chr7:24718519-24718753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 185

               
               
               Conread position:223-485
               
               
               Cow position:chr7:15755440-15755701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:223-497
               
               
               Cow position:chr7:47931786-47932060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:223-621
               
               
               Cow position:chr7:13928144-13928531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:223-624
               
               
               Cow position:chr7:52718625-52719029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:224-543
               
               
               Cow position:chr7:40189564-40189242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:224-624
               
               
               Cow position:chr7:18388391-18388787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:224-625
               
               
               Cow position:chr7:67816912-67816499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:226-403
               
               
               Cow position:chr7:31497729-31497548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:226-438
               
               
               Cow position:chr7:14712194-14712398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:226-451
               
               
               Cow position:chr7:255805-256026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:226-476
               
               
               Cow position:chr7:48721894-48722148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:226-495
               
               
               Cow position:chr7:47503667-47503396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):16, 128

               
               
               Conread position:226-546
               
               
               Cow position:chr7:58614795-58614482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:226-614
               
               
               Cow position:chr7:12408227-12408636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 277

               
               
               Conread position:226-621
               
               
               Cow position:chr7:6058131-6057741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:226-621
               
               
               Cow position:chr7:40952853-40953250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:226-622
               
               
               Cow position:chr7:4418453-4418852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 239

               
               
               Conread position:226-623
               
               
               Cow position:chr7:28563380-28563770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:226-623
               
               
               Cow position:chr7:49648369-49647973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:226-624
               
               
               Cow position:chr7:35893424-35893026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 250

               
               
               Conread position:227-623
               
               
               Cow position:chr7:45927157-45927540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-440
               
               
               Cow position:chr7:50066113-50066319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:228-582
               
               
               Cow position:chr7:20968437-20968083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:229-623
               
               
               Cow position:chr7:46856960-46857344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:238-401
               
               
               Cow position:chr7:33989951-33989793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:238-403
               
               
               Cow position:chr7:20219847-20220009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:239-421
               
               
               Cow position:chr7:67873181-67872994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:239-623
               
               
               Cow position:chr7:64364538-64364915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:240-382
               
               
               Cow position:chr7:40671630-40671486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-438
               
               
               Cow position:chr7:68173163-68173358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:240-442
               
               
               Cow position:chr7:63946594-63946780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:240-448
               
               
               Cow position:chr7:48406506-48406715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:240-452
               
               
               Cow position:chr7:8777192-8776980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 131

               
               
               Conread position:240-525
               
               
               Cow position:chr7:20918364-20918618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:240-533
               
               
               Cow position:chr7:9075045-9074756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 88

               
               
               Conread position:240-569
               
               
               Cow position:chr7:31094360-31094677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-579
               
               
               Cow position:chr7:31204531-31204866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 133

               
               
               Conread position:240-603
               
               
               Cow position:chr7:25083684-25083323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:240-621
               
               
               Cow position:chr7:30155964-30156323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 184

               
               
               Conread position:240-625
               
               
               Cow position:chr7:12212612-12213007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 265

               
               
               Conread position:240-625
               
               
               Cow position:chr7:40571262-40570878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 330

               
               
               Conread position:240-625
               
               
               Cow position:chr7:48859520-48859900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:241-625
               
               
               Cow position:chr7:1262012-1261630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 183

               
               
               Conread position:242-337
               
               
               Cow position:chr7:42636968-42636873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-339
               
               
               Cow position:chr7:5199563-5199660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-340
               
               
               Cow position:chr7:8809773-8809674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-342
               
               
               Cow position:chr7:14353802-14353902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr7:13296031-13296138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-353
               
               
               Cow position:chr7:23636694-23636584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-362
               
               
               Cow position:chr7:8272647-8272526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-376
               
               
               Cow position:chr7:48205111-48205242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-379
               
               
               Cow position:chr7:11960404-11960269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:242-386
               
               
               Cow position:chr7:30816301-30816439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr7:42593292-42593431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr7:52320923-52321075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr7:6820886-6820727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:242-397
               
               
               Cow position:chr7:46105897-46106050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:242-398
               
               
               Cow position:chr7:8977831-8977987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-402
               
               
               Cow position:chr7:20168535-20168385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:242-411
               
               
               Cow position:chr7:3773281-3773448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-412
               
               
               Cow position:chr7:32905974-32906149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:242-422
               
               
               Cow position:chr7:6800564-6800744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-424
               
               
               Cow position:chr7:48714839-48714657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-426
               
               
               Cow position:chr7:13963191-13963010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:242-427
               
               
               Cow position:chr7:12201935-12202110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-433
               
               
               Cow position:chr7:3311831-3311641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-435
               
               
               Cow position:chr7:23131585-23131395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr7:3026729-3026933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:242-445
               
               
               Cow position:chr7:5914190-5913991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:242-446
               
               
               Cow position:chr7:16574346-16574149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:242-446
               
               
               Cow position:chr7:57162139-57161936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-450
               
               
               Cow position:chr7:25263362-25263150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:242-451
               
               
               Cow position:chr7:10132-9926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 88

               
               
               Conread position:242-451
               
               
               Cow position:chr7:66266600-66266804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:242-452
               
               
               Cow position:chr7:20394-20182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr7:147399-147192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 85

               
               
               Conread position:242-452
               
               
               Cow position:chr7:23936096-23935897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr7:3283351-3283141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr7:3256366-3256569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr7:24213871-24213655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:242-460
               
               
               Cow position:chr7:600322-600115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):208, 60

               
               
               Conread position:242-461
               
               
               Cow position:chr7:54513422-54513649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:242-465
               
               
               Cow position:chr7:31315300-31315089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-469
               
               
               Cow position:chr7:39988392-39988173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:242-471
               
               
               Cow position:chr7:29010409-29010629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:242-478
               
               
               Cow position:chr7:2931688-2931451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:242-489
               
               
               Cow position:chr7:20537350-20537107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-493
               
               
               Cow position:chr7:32915097-32914855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-498
               
               
               Cow position:chr7:4112145-4112403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:242-504
               
               
               Cow position:chr7:32791691-32791419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 242

               
               
               Conread position:242-508
               
               
               Cow position:chr7:23657819-23657557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:242-516
               
               
               Cow position:chr7:21650090-21649820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 103

               
               
               Conread position:242-521
               
               
               Cow position:chr7:23679604-23679880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 0

               
               
               Conread position:242-524
               
               
               Cow position:chr7:32819803-32819521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-528
               
               
               Cow position:chr7:11607531-11607246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 140

               
               
               Conread position:242-528
               
               
               Cow position:chr7:45095762-45096049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr7:48069135-48068842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:242-541
               
               
               Cow position:chr7:51072230-51071932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-550
               
               
               Cow position:chr7:47513700-47514006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-553
               
               
               Cow position:chr7:17757026-17756725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:242-570
               
               
               Cow position:chr7:28090220-28089904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr7:51780709-51780377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:242-570
               
               
               Cow position:chr7:64013623-64013293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-571
               
               
               Cow position:chr7:35275093-35275406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:242-579
               
               
               Cow position:chr7:28584234-28583904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 74

               
               
               Conread position:242-582
               
               
               Cow position:chr7:2923633-2923293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-584
               
               
               Cow position:chr7:61129209-61128868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 120

               
               
               Conread position:242-591
               
               
               Cow position:chr7:14520053-14520395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-592
               
               
               Cow position:chr7:34979371-34979010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:242-593
               
               
               Cow position:chr7:19981857-19982193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:242-607
               
               
               Cow position:chr7:548976-548616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 303

               
               
               Conread position:242-607
               
               
               Cow position:chr7:13805416-13805780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-613
               
               
               Cow position:chr7:37361868-37361512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:242-616
               
               
               Cow position:chr7:60483439-60483806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:242-617
               
               
               Cow position:chr7:27079614-27079256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr7:57259040-57259413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:242-618
               
               
               Cow position:chr7:14542071-14542436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-618
               
               
               Cow position:chr7:40121451-40121065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 74

               
               
               Conread position:242-619
               
               
               Cow position:chr7:4138742-4139106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr7:13593754-13593404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:242-619
               
               
               Cow position:chr7:23099056-23099426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 108

               
               
               Conread position:242-619
               
               
               Cow position:chr7:26771855-26771484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 60

               
               
               Conread position:242-619
               
               
               Cow position:chr7:62793773-62793398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 103

               
               
               Conread position:242-620
               
               
               Cow position:chr7:30276724-30276348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 0

               
               
               Conread position:242-620
               
               
               Cow position:chr7:36665319-36664943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 103

               
               
               Conread position:242-621
               
               
               Cow position:chr7:6041963-6041618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr7:6624947-6625327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chr7:26631826-26632198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:242-621
               
               
               Cow position:chr7:32894262-32894640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 47

               
               
               Conread position:242-621
               
               
               Cow position:chr7:39930279-39929886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 89

               
               
               Conread position:242-621
               
               
               Cow position:chr7:40324381-40324001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr7:46148843-46148490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr7:56886797-56887159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 86

               
               
               Conread position:242-621
               
               
               Cow position:chr7:62193554-62193181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr7:23619098-23619474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr7:26838644-26838264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-623
               
               
               Cow position:chr7:31170964-31171337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr7:39149929-39149551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 256

               
               
               Conread position:242-623
               
               
               Cow position:chr7:39325722-39325371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr7:44596712-44597089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 109

               
               
               Conread position:242-623
               
               
               Cow position:chr7:45593027-45592644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 60

               
               
               Conread position:242-623
               
               
               Cow position:chr7:54580895-54580523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:242-623
               
               
               Cow position:chr7:58362938-58362542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 237

               
               
               Conread position:242-624
               
               
               Cow position:chr7:1720980-1721357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:242-624
               
               
               Cow position:chr7:12385130-12384755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 44

               
               
               Conread position:242-624
               
               
               Cow position:chr7:24778128-24778501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:242-624
               
               
               Cow position:chr7:39401947-39401562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 206

               
               
               Conread position:242-624
               
               
               Cow position:chr7:41328053-41328411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 93

               
               
               Conread position:242-624
               
               
               Cow position:chr7:54712406-54712031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr7:9080366-9079983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:242-625
               
               
               Cow position:chr7:11439599-11439983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr7:22772078-22772462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr7:23646594-23646216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr7:26993605-26993218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 232

               
               
               Conread position:242-625
               
               
               Cow position:chr7:33336111-33335730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 168

               
               
               Conread position:242-625
               
               
               Cow position:chr7:34716235-34715846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 130

               
               
               Conread position:242-625
               
               
               Cow position:chr7:58138953-58138569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:242-625
               
               
               Cow position:chr7:59695350-59694970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 229

               
               
               Conread position:242-625
               
               
               Cow position:chr7:63085546-63085173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:243-357
               
               
               Cow position:chr7:38263658-38263542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:243-450
               
               
               Cow position:chr7:51319785-51319583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:243-452
               
               
               Cow position:chr7:25867522-25867724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:243-456
               
               
               Cow position:chr7:66748538-66748747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 117

               
               
               Conread position:243-459
               
               
               Cow position:chr7:11714440-11714653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:243-565
               
               
               Cow position:chr7:61601391-61601701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 195

               
               
               Conread position:243-570
               
               
               Cow position:chr7:21846061-21846389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-608
               
               
               Cow position:chr7:23568752-23569115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:243-619
               
               
               Cow position:chr7:65122329-65121972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:243-620
               
               
               Cow position:chr7:28917074-28916693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 315

               
               
               Conread position:243-621
               
               
               Cow position:chr7:32240615-32240247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:243-623
               
               
               Cow position:chr7:49751113-49750749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 100

               
               
               Conread position:243-624
               
               
               Cow position:chr7:42429862-42429478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr7:3633518-3633909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-625
               
               
               Cow position:chr7:19925452-19925834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 87

               
               
               Conread position:244-405
               
               
               Cow position:chr7:5399058-5399219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:244-430
               
               
               Cow position:chr7:59168257-59168081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:244-438
               
               
               Cow position:chr7:32426169-32425974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-462
               
               
               Cow position:chr7:36278279-36278066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:244-600
               
               
               Cow position:chr7:56820586-56820947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 101

               
               
               Conread position:244-619
               
               
               Cow position:chr7:53772345-53772693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr7:23456838-23457186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr7:34548817-34548442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 197

               
               
               Conread position:244-624
               
               
               Cow position:chr7:38082141-38081769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:245-347
               
               
               Cow position:chr7:33810667-33810565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:245-366
               
               
               Cow position:chr7:34214579-34214462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:245-451
               
               
               Cow position:chr7:60547683-60547882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 52

               
               
               Conread position:245-452
               
               
               Cow position:chr7:45747860-45748051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-456
               
               
               Cow position:chr7:31881661-31881465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-459
               
               
               Cow position:chr7:58862902-58863105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:245-495
               
               
               Cow position:chr7:14536296-14536530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:245-508
               
               
               Cow position:chr7:40067644-40067375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:245-543
               
               
               Cow position:chr7:7476466-7476755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:245-559
               
               
               Cow position:chr7:60121499-60121196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:245-565
               
               
               Cow position:chr7:4582743-4583067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-568
               
               
               Cow position:chr7:2896749-2896427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:245-579
               
               
               Cow position:chr7:27136486-27136146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 309

               
               
               Conread position:245-591
               
               
               Cow position:chr7:35286653-35286972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:245-602
               
               
               Cow position:chr7:10069728-10070071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:245-607
               
               
               Cow position:chr7:44454294-44454639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:245-620
               
               
               Cow position:chr7:35652090-35652463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:245-620
               
               
               Cow position:chr7:36569834-36569476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr7:61817954-61818323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 115

               
               
               Conread position:245-623
               
               
               Cow position:chr7:3336567-3336929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:245-624
               
               
               Cow position:chr7:11869854-11870223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:245-624
               
               
               Cow position:chr7:24932431-24932785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:245-625
               
               
               Cow position:chr7:61790371-61790747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:246-372
               
               
               Cow position:chr7:9781741-9781870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:246-383
               
               
               Cow position:chr7:9800337-9800205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:246-431
               
               
               Cow position:chr7:1489862-1489673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:246-623
               
               
               Cow position:chr7:25415381-25415009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:246-624
               
               
               Cow position:chr7:20780136-20779748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-369
               
               
               Cow position:chr7:21166262-21166387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-383
               
               
               Cow position:chr7:27359493-27359624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:247-383
               
               
               Cow position:chr7:43055718-43055849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:247-394
               
               
               Cow position:chr7:53763602-53763746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:247-430
               
               
               Cow position:chr7:43882063-43881881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-435
               
               
               Cow position:chr7:59075831-59075651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 54

               
               
               Conread position:247-452
               
               
               Cow position:chr7:65818473-65818674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:247-459
               
               
               Cow position:chr7:43184784-43184578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:247-489
               
               
               Cow position:chr7:63378375-63378138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:247-494
               
               
               Cow position:chr7:53097570-53097338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:247-559
               
               
               Cow position:chr7:39169890-39169576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:247-623
               
               
               Cow position:chr7:24796709-24797079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:247-624
               
               
               Cow position:chr7:8877861-8877494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:247-624
               
               
               Cow position:chr7:22624120-22624487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:247-624
               
               
               Cow position:chr7:47547389-47547004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 177

               
               
               Conread position:247-624
               
               
               Cow position:chr7:64228911-64229291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:247-624
               
               
               Cow position:chr7:69054530-69054175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:247-625
               
               
               Cow position:chr7:19466268-19466653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 168

               
               
               Conread position:247-625
               
               
               Cow position:chr7:66894558-66894931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:248-389
               
               
               Cow position:chr7:40336021-40335883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:248-452
               
               
               Cow position:chr7:56838512-56838716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 168

               
               
               Conread position:248-482
               
               
               Cow position:chr7:25496716-25496496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:249-452
               
               
               Cow position:chr7:40263667-40263872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:249-456
               
               
               Cow position:chr7:6706279-6706074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:250-373
               
               
               Cow position:chr7:54109179-54109303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:250-511
               
               
               Cow position:chr7:57537546-57537806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):212, 41

               
               
               Conread position:250-528
               
               
               Cow position:chr7:45658406-45658676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:250-537
               
               
               Cow position:chr7:10512730-10513016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:250-565
               
               
               Cow position:chr7:42244714-42245044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 95

               
               
               Conread position:250-621
               
               
               Cow position:chr7:26737356-26737705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 109

               
               
               Conread position:251-606
               
               
               Cow position:chr7:29280035-29280391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:251-618
               
               
               Cow position:chr7:52382997-52383370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 94

               
               
               Conread position:252-457
               
               
               Cow position:chr7:44049394-44049588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:252-460
               
               
               Cow position:chr7:42460408-42460208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:252-587
               
               
               Cow position:chr7:64269006-64269335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:252-622
               
               
               Cow position:chr7:23664113-23664483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 221

               
               
               Conread position:253-433
               
               
               Cow position:chr7:14029309-14029136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:253-614
               
               
               Cow position:chr7:18247829-18248189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:254-424
               
               
               Cow position:chr7:11715684-11715513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:254-443
               
               
               Cow position:chr7:55694070-55694262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):152, 14

               
               
               Conread position:255-624
               
               
               Cow position:chr7:29300783-29301142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:257-395
               
               
               Cow position:chr7:43894803-43894662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:257-592
               
               
               Cow position:chr7:53806843-53807169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:257-625
               
               
               Cow position:chr7:41872118-41872468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 42

               
               
               Conread position:258-452
               
               
               Cow position:chr7:29345962-29346155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:258-459
               
               
               Cow position:chr7:36996346-36996152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:258-623
               
               
               Cow position:chr7:20534847-20534486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 64

               
               
               Conread position:258-625
               
               
               Cow position:chr7:25195514-25195122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 220

               
               
               Conread position:259-618
               
               
               Cow position:chr7:40710083-40709724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:259-621
               
               
               Cow position:chr7:29509921-29509585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:260-526
               
               
               Cow position:chr7:17269391-17269649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:260-619
               
               
               Cow position:chr7:39939710-39939354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:260-623
               
               
               Cow position:chr7:18306870-18307232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:260-625
               
               
               Cow position:chr7:23477355-23477693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:263-391
               
               
               Cow position:chr7:2897129-2897003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:263-625
               
               
               Cow position:chr7:59558192-59558546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:264-415
               
               
               Cow position:chr7:35793081-35792935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:264-459
               
               
               Cow position:chr7:20827655-20827841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:264-459
               
               
               Cow position:chr7:53785993-53786184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:264-560
               
               
               Cow position:chr7:29474661-29474366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:264-622
               
               
               Cow position:chr7:10122675-10122323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 80

               
               
               Conread position:264-623
               
               
               Cow position:chr7:26012393-26012024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 235

               
               
               Conread position:264-624
               
               
               Cow position:chr7:54583640-54583291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:265-622
               
               
               Cow position:chr7:15654109-15654463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:266-624
               
               
               Cow position:chr7:15259052-15258721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:268-447
               
               
               Cow position:chr7:40406620-40406448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):169, 99

               
               
               Conread position:270-427
               
               
               Cow position:chr7:54700042-54699885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:270-506
               
               
               Cow position:chr7:11176747-11176978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:270-528
               
               
               Cow position:chr7:36533991-36533738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 86

               
               
               Conread position:270-584
               
               
               Cow position:chr7:16667544-16667243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:270-621
               
               
               Cow position:chr7:40567031-40566692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:213-565
               
               
               Cow position:chr8:20107794-20108166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:214-438
               
               
               Cow position:chr8:1596180-1596408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:215-395
               
               
               Cow position:chr8:23018525-23018707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):152, 39

               
               
               Conread position:215-623
               
               
               Cow position:chr8:11606314-11605906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:216-393
               
               
               Cow position:chr8:633942-634122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:216-450
               
               
               Cow position:chr8:31762836-31763065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 129

               
               
               Conread position:216-519
               
               
               Cow position:chr8:20384766-20384472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:217-429
               
               
               Cow position:chr8:20926654-20926864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:217-446
               
               
               Cow position:chr8:28412629-28412856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:217-617
               
               
               Cow position:chr8:40888213-40888608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:217-624
               
               
               Cow position:chr8:12058709-12058291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 217

               
               
               Conread position:217-625
               
               
               Cow position:chr8:36375530-36375922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 39

               
               
               Conread position:220-493
               
               
               Cow position:chr8:42145795-42146056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:222-347
               
               
               Cow position:chr8:39807571-39807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:223-471
               
               
               Cow position:chr8:48437427-48437670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:223-477
               
               
               Cow position:chr8:47664926-47665182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:223-570
               
               
               Cow position:chr8:6232918-6233266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:223-592
               
               
               Cow position:chr8:10400276-10399923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:223-622
               
               
               Cow position:chr8:49721117-49720715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 192

               
               
               Conread position:223-623
               
               
               Cow position:chr8:32621012-32621416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 332

               
               
               Conread position:224-415
               
               
               Cow position:chr8:39426138-39425947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:224-622
               
               
               Cow position:chr8:36397937-36398335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:224-624
               
               
               Cow position:chr8:43168052-43168453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 84

               
               
               Conread position:226-395
               
               
               Cow position:chr8:27138819-27138982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:226-420
               
               
               Cow position:chr8:1327408-1327216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:226-426
               
               
               Cow position:chr8:20102800-20102996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:226-427
               
               
               Cow position:chr8:35504261-35504461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:226-447
               
               
               Cow position:chr8:1023942-1023715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:226-623
               
               
               Cow position:chr8:18081513-18081098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:226-625
               
               
               Cow position:chr8:16030238-16030634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:227-506
               
               
               Cow position:chr8:2163927-2164211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:227-620
               
               
               Cow position:chr8:1303881-1303493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:227-622
               
               
               Cow position:chr8:53964772-53965165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:228-353
               
               
               Cow position:chr8:19717126-19717250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:228-450
               
               
               Cow position:chr8:57045522-57045747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:228-454
               
               
               Cow position:chr8:39630747-39630518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:228-523
               
               
               Cow position:chr8:10176170-10176470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 196

               
               
               Conread position:228-553
               
               
               Cow position:chr8:32133242-32132901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 94

               
               
               Conread position:230-359
               
               
               Cow position:chr8:55884941-55884810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:230-459
               
               
               Cow position:chr8:23026671-23026443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:230-460
               
               
               Cow position:chr8:18207164-18207405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:230-550
               
               
               Cow position:chr8:9705572-9705261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 95

               
               
               Conread position:230-550
               
               
               Cow position:chr8:59766571-59766262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:232-377
               
               
               Cow position:chr8:11135289-11135437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:236-358
               
               
               Cow position:chr8:38137383-38137260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:237-624
               
               
               Cow position:chr8:18730406-18730016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 191

               
               
               Conread position:238-425
               
               
               Cow position:chr8:4205884-4205702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:238-525
               
               
               Cow position:chr8:26386258-26386542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:239-438
               
               
               Cow position:chr8:23030385-23030200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:240-421
               
               
               Cow position:chr8:4591115-4591292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:240-452
               
               
               Cow position:chr8:25249743-25249530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-456
               
               
               Cow position:chr8:6184513-6184723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:240-494
               
               
               Cow position:chr8:60774771-60775020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:240-625
               
               
               Cow position:chr8:28321932-28321552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:240-625
               
               
               Cow position:chr8:49879892-49879528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:241-463
               
               
               Cow position:chr8:20339245-20339024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:242-343
               
               
               Cow position:chr8:6073862-6073960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:242-357
               
               
               Cow position:chr8:44882902-44882786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr8:35563287-35563169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:242-370
               
               
               Cow position:chr8:54061230-54061100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr8:21222595-21222454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr8:12213969-12213829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:242-395
               
               
               Cow position:chr8:26304433-26304595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:242-405
               
               
               Cow position:chr8:4500448-4500286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:242-405
               
               
               Cow position:chr8:28221608-28221771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-407
               
               
               Cow position:chr8:32093834-32093677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-415
               
               
               Cow position:chr8:3976185-3976005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr8:5979897-5979729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr8:36465163-36464980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:242-428
               
               
               Cow position:chr8:47679373-47679188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:242-429
               
               
               Cow position:chr8:54302984-54302808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):177, 85

               
               
               Conread position:242-430
               
               
               Cow position:chr8:35991005-35990818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:242-432
               
               
               Cow position:chr8:54031830-54031647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:242-436
               
               
               Cow position:chr8:20683926-20683738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:242-436
               
               
               Cow position:chr8:32295774-32295973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-438
               
               
               Cow position:chr8:28509529-28509728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:242-439
               
               
               Cow position:chr8:29625014-29625201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:242-442
               
               
               Cow position:chr8:2897662-2897861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr8:20157809-20158001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:242-446
               
               
               Cow position:chr8:17669783-17669985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:242-447
               
               
               Cow position:chr8:2953588-2953389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr8:55958247-55958454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-450
               
               
               Cow position:chr8:48775775-48775567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-451
               
               
               Cow position:chr8:20080112-20080315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:242-451
               
               
               Cow position:chr8:34478075-34477865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-451
               
               
               Cow position:chr8:40743395-40743600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:242-454
               
               
               Cow position:chr8:45664730-45664522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-456
               
               
               Cow position:chr8:16053489-16053287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 55

               
               
               Conread position:242-457
               
               
               Cow position:chr8:53485654-53485451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr8:225410-225623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:242-459
               
               
               Cow position:chr8:10263210-10263420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 40

               
               
               Conread position:242-459
               
               
               Cow position:chr8:10434764-10434551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr8:16023686-16023893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:242-459
               
               
               Cow position:chr8:18831691-18831482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:242-459
               
               
               Cow position:chr8:45830845-45830630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:242-459
               
               
               Cow position:chr8:49265350-49265566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:242-463
               
               
               Cow position:chr8:10702734-10702512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-473
               
               
               Cow position:chr8:23609172-23608948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:242-473
               
               
               Cow position:chr8:39721621-39721394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:242-485
               
               
               Cow position:chr8:35971807-35971564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:242-486
               
               
               Cow position:chr8:24201862-24201619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 113

               
               
               Conread position:242-495
               
               
               Cow position:chr8:19642427-19642177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:242-496
               
               
               Cow position:chr8:8721910-8721656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 248

               
               
               Conread position:242-496
               
               
               Cow position:chr8:35966073-35966326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:242-498
               
               
               Cow position:chr8:55926154-55925889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 46

               
               
               Conread position:242-506
               
               
               Cow position:chr8:9517222-9517484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:242-507
               
               
               Cow position:chr8:22273819-22273554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 177

               
               
               Conread position:242-523
               
               
               Cow position:chr8:38572315-38572598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 227

               
               
               Conread position:242-524
               
               
               Cow position:chr8:55208562-55208282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-529
               
               
               Cow position:chr8:10456421-10456128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):200, 103

               
               
               Conread position:242-533
               
               
               Cow position:chr8:24513189-24513468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:242-534
               
               
               Cow position:chr8:32622025-32622318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-543
               
               
               Cow position:chr8:33974513-33974233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:242-553
               
               
               Cow position:chr8:61567419-61567717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-555
               
               
               Cow position:chr8:23121556-23121245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:242-558
               
               
               Cow position:chr8:9130974-9131291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):209, 47

               
               
               Conread position:242-562
               
               
               Cow position:chr8:44000533-44000843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-570
               
               
               Cow position:chr8:23108660-23108989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-580
               
               
               Cow position:chr8:17046805-17047138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:242-589
               
               
               Cow position:chr8:9229925-9230267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 177

               
               
               Conread position:242-591
               
               
               Cow position:chr8:53822513-53822162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-602
               
               
               Cow position:chr8:42607322-42607677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 103

               
               
               Conread position:242-617
               
               
               Cow position:chr8:1252910-1252541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:242-619
               
               
               Cow position:chr8:23179588-23179960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr8:43027700-43028077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 135

               
               
               Conread position:242-620
               
               
               Cow position:chr8:3704576-3704204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:242-621
               
               
               Cow position:chr8:6463739-6464113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-621
               
               
               Cow position:chr8:16938501-16938869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 76

               
               
               Conread position:242-621
               
               
               Cow position:chr8:19995776-19996141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 8

               
               
               Conread position:242-621
               
               
               Cow position:chr8:24371761-24372129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:242-621
               
               
               Cow position:chr8:33432208-33431841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:242-621
               
               
               Cow position:chr8:36055445-36055826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:242-621
               
               
               Cow position:chr8:51445746-51446126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:242-621
               
               
               Cow position:chr8:52925761-52926141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 96

               
               
               Conread position:242-621
               
               
               Cow position:chr8:54052265-54051892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 207

               
               
               Conread position:242-622
               
               
               Cow position:chr8:4924524-4924142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-622
               
               
               Cow position:chr8:9689267-9688897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:242-623
               
               
               Cow position:chr8:5484917-5485298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 185

               
               
               Conread position:242-623
               
               
               Cow position:chr8:10970786-10970424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 26

               
               
               Conread position:242-623
               
               
               Cow position:chr8:15391206-15391573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:242-623
               
               
               Cow position:chr8:24390242-24390620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:242-623
               
               
               Cow position:chr8:29262731-29262348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 49

               
               
               Conread position:242-623
               
               
               Cow position:chr8:37122930-37122533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 125

               
               
               Conread position:242-623
               
               
               Cow position:chr8:50949732-50949345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 181

               
               
               Conread position:242-624
               
               
               Cow position:chr8:1834878-1834480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr8:18017474-18017102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 203

               
               
               Conread position:242-624
               
               
               Cow position:chr8:21077543-21077182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 54

               
               
               Conread position:242-624
               
               
               Cow position:chr8:31253768-31253379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr8:33693467-33693070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr8:43858097-43858474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:242-625
               
               
               Cow position:chr8:2946775-2947159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr8:8872788-8873171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chr8:13930527-13930910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr8:25628304-25627925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 32

               
               
               Conread position:242-625
               
               
               Cow position:chr8:28880804-28880430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 191

               
               
               Conread position:242-625
               
               
               Cow position:chr8:32626665-32627050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr8:36648499-36648871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 179

               
               
               Conread position:242-625
               
               
               Cow position:chr8:43248392-43248008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr8:47463949-47463566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:242-625
               
               
               Cow position:chr8:50325224-50324849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 168

               
               
               Conread position:242-625
               
               
               Cow position:chr8:51606557-51606940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 73

               
               
               Conread position:242-625
               
               
               Cow position:chr8:55444035-55444419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chr8:60091067-60091451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr8:60115535-60115151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-348
               
               
               Cow position:chr8:37192324-37192219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-386
               
               
               Cow position:chr8:28313767-28313909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:243-391
               
               
               Cow position:chr8:19284457-19284310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:243-446
               
               
               Cow position:chr8:32988698-32988501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:243-454
               
               
               Cow position:chr8:39039985-39039777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:243-456
               
               
               Cow position:chr8:25349667-25349454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:243-458
               
               
               Cow position:chr8:35580682-35580885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:243-485
               
               
               Cow position:chr8:2882019-2881778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):222, 91

               
               
               Conread position:243-546
               
               
               Cow position:chr8:4563469-4563780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:243-558
               
               
               Cow position:chr8:18648129-18648443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:243-614
               
               
               Cow position:chr8:11078825-11078450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:243-621
               
               
               Cow position:chr8:17103465-17103820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 102

               
               
               Conread position:243-623
               
               
               Cow position:chr8:50709007-50708627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 321

               
               
               Conread position:243-624
               
               
               Cow position:chr8:554231-554595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 115

               
               
               Conread position:244-357
               
               
               Cow position:chr8:46616367-46616254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-391
               
               
               Cow position:chr8:8190112-8190257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:244-458
               
               
               Cow position:chr8:42794364-42794566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:244-463
               
               
               Cow position:chr8:42762477-42762687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-621
               
               
               Cow position:chr8:12444987-12445362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 152

               
               
               Conread position:244-623
               
               
               Cow position:chr8:33994116-33993748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:244-625
               
               
               Cow position:chr8:8513666-8514046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:245-359
               
               
               Cow position:chr8:53929629-53929743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:245-383
               
               
               Cow position:chr8:35519982-35519846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:245-384
               
               
               Cow position:chr8:29029326-29029469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-435
               
               
               Cow position:chr8:11278154-11278345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:245-458
               
               
               Cow position:chr8:36858152-36858356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):178, 99

               
               
               Conread position:245-458
               
               
               Cow position:chr8:37571750-37571964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:245-462
               
               
               Cow position:chr8:16487353-16487563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:245-507
               
               
               Cow position:chr8:24363987-24364240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:245-595
               
               
               Cow position:chr8:12303403-12303061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 130

               
               
               Conread position:245-621
               
               
               Cow position:chr8:35555601-35555968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 217

               
               
               Conread position:245-622
               
               
               Cow position:chr8:798065-797693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):350, 94

               
               
               Conread position:245-623
               
               
               Cow position:chr8:37882299-37881905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:245-624
               
               
               Cow position:chr8:54572598-54572225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:245-625
               
               
               Cow position:chr8:14947343-14947730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 191

               
               
               Conread position:245-625
               
               
               Cow position:chr8:16144081-16143702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:245-625
               
               
               Cow position:chr8:25083230-25082842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:246-377
               
               
               Cow position:chr8:3655549-3655418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:246-452
               
               
               Cow position:chr8:8986991-8987187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:246-552
               
               
               Cow position:chr8:7076434-7076133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):216, 99

               
               
               Conread position:246-619
               
               
               Cow position:chr8:59250684-59250316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 92

               
               
               Conread position:247-374
               
               
               Cow position:chr8:14919236-14919113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:247-380
               
               
               Cow position:chr8:20150604-20150739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:247-412
               
               
               Cow position:chr8:39181815-39181983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:247-447
               
               
               Cow position:chr8:39985790-39985979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr8:20563811-20564020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 100

               
               
               Conread position:247-459
               
               
               Cow position:chr8:20783313-20783538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr8:34400896-34400690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 141

               
               
               Conread position:247-459
               
               
               Cow position:chr8:57943395-57943606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:247-460
               
               
               Cow position:chr8:60746598-60746386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 150

               
               
               Conread position:247-468
               
               
               Cow position:chr8:34799626-34799409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-493
               
               
               Cow position:chr8:26961076-26960828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:247-499
               
               
               Cow position:chr8:38356897-38357147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:247-621
               
               
               Cow position:chr8:13374497-13374124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 54

               
               
               Conread position:247-623
               
               
               Cow position:chr8:23111120-23111495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:247-623
               
               
               Cow position:chr8:29765208-29764838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:247-623
               
               
               Cow position:chr8:38358380-38358006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:247-624
               
               
               Cow position:chr8:47751961-47752339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 226

               
               
               Conread position:248-353
               
               
               Cow position:chr8:11927101-11926996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:249-448
               
               
               Cow position:chr8:29030150-29030342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):151, 91

               
               
               Conread position:250-435
               
               
               Cow position:chr8:53558658-53558836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:250-435
               
               
               Cow position:chr8:54306030-54305849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:250-455
               
               
               Cow position:chr8:20212558-20212760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:251-407
               
               
               Cow position:chr8:29917407-29917559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:251-459
               
               
               Cow position:chr8:38681829-38681622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:252-438
               
               
               Cow position:chr8:47665749-47665929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:252-529
               
               
               Cow position:chr8:21268578-21268848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:252-595
               
               
               Cow position:chr8:10297789-10298129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:253-367
               
               
               Cow position:chr8:44558330-44558441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:254-569
               
               
               Cow position:chr8:4821283-4821594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 91

               
               
               Conread position:255-498
               
               
               Cow position:chr8:3887307-3887063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:255-623
               
               
               Cow position:chr8:58636706-58636349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:258-451
               
               
               Cow position:chr8:22755956-22755775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:258-570
               
               
               Cow position:chr8:10699518-10699825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:260-429
               
               
               Cow position:chr8:30418985-30418814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:260-431
               
               
               Cow position:chr8:31646070-31646236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:260-623
               
               
               Cow position:chr8:43439548-43439168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 333

               
               
               Conread position:260-625
               
               
               Cow position:chr8:47861002-47861356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:262-459
               
               
               Cow position:chr8:16093212-16093022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):155, 69

               
               
               Conread position:264-421
               
               
               Cow position:chr8:24905433-24905275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:137
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:264-443
               
               
               Cow position:chr8:9315845-9315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:264-625
               
               
               Cow position:chr8:45245083-45245436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:266-603
               
               
               Cow position:chr8:45493818-45493483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:266-623
               
               
               Cow position:chr8:33406912-33407253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:270-566
               
               
               Cow position:chr8:46842338-46842625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:270-581
               
               
               Cow position:chr8:51579199-51578882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 283

               
               
               Conread position:271-602
               
               
               Cow position:chr8:42112872-42113206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 39

               
               
               Conread position:272-386
               
               
               Cow position:chr8:6951457-6951343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:208-623
               
               
               Cow position:chr9:6879816-6880236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 73

               
               
               Conread position:215-372
               
               
               Cow position:chr9:30652653-30652498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:215-566
               
               
               Cow position:chr9:18121256-18121609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:215-591
               
               
               Cow position:chr9:20681350-20680982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:215-622
               
               
               Cow position:chr9:38961382-38960976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:216-405
               
               
               Cow position:chr9:40603995-40604193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:216-563
               
               
               Cow position:chr9:47906223-47905879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:217-620
               
               
               Cow position:chr9:9461602-9461204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:218-459
               
               
               Cow position:chr9:40542175-40542410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:222-619
               
               
               Cow position:chr9:8998415-8998810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:223-430
               
               
               Cow position:chr9:41995769-41995982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:223-543
               
               
               Cow position:chr9:18002892-18002571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:223-598
               
               
               Cow position:chr9:61997537-61997169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:223-624
               
               
               Cow position:chr9:22318410-22318800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:223-624
               
               
               Cow position:chr9:34000562-34000151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 253

               
               
               Conread position:224-407
               
               
               Cow position:chr9:50139347-50139526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 125

               
               
               Conread position:224-430
               
               
               Cow position:chr9:16182427-16182223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:224-606
               
               
               Cow position:chr9:21888227-21888613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:225-405
               
               
               Cow position:chr9:6840063-6840254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:225-409
               
               
               Cow position:chr9:388953-388768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:226-421
               
               
               Cow position:chr9:18217037-18216841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:226-434
               
               
               Cow position:chr9:55118148-55118350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:226-457
               
               
               Cow position:chr9:35849966-35850193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:226-507
               
               
               Cow position:chr9:19714144-19714415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:226-508
               
               
               Cow position:chr9:19541969-19542254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:226-528
               
               
               Cow position:chr9:5433700-5433997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:226-529
               
               
               Cow position:chr9:10092329-10092029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:227-380
               
               
               Cow position:chr9:6118084-6117929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:227-615
               
               
               Cow position:chr9:9516699-9516318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:227-624
               
               
               Cow position:chr9:824026-824417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:228-406
               
               
               Cow position:chr9:51004958-51005131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:228-495
               
               
               Cow position:chr9:5319698-5319962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:230-349
               
               
               Cow position:chr9:41728328-41728446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:239-623
               
               
               Cow position:chr9:37069489-37069083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:240-391
               
               
               Cow position:chr9:50667506-50667653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:240-429
               
               
               Cow position:chr9:37141313-37141494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:240-458
               
               
               Cow position:chr9:5209662-5209880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):200, 172

               
               
               Conread position:240-458
               
               
               Cow position:chr9:30138210-30138421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:240-459
               
               
               Cow position:chr9:29034949-29034739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):186, 79

               
               
               Conread position:240-488
               
               
               Cow position:chr9:64155779-64155530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-623
               
               
               Cow position:chr9:44467271-44466888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):359, 323

               
               
               Conread position:240-624
               
               
               Cow position:chr9:15983003-15982620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 172

               
               
               Conread position:241-459
               
               
               Cow position:chr9:44408124-44408329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:242-339
               
               
               Cow position:chr9:11168813-11168911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-349
               
               
               Cow position:chr9:19555457-19555565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:242-355
               
               
               Cow position:chr9:12910318-12910202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-359
               
               
               Cow position:chr9:9654228-9654112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:242-367
               
               
               Cow position:chr9:3738138-3738013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr9:61303087-61303217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-380
               
               
               Cow position:chr9:17799713-17799848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-384
               
               
               Cow position:chr9:1973025-1973164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:242-384
               
               
               Cow position:chr9:27279392-27279540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr9:4192361-4192209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-394
               
               
               Cow position:chr9:31292772-31292920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:242-403
               
               
               Cow position:chr9:19493380-19493221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:242-406
               
               
               Cow position:chr9:767070-766906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:139
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):13, 117

               
               
               Conread position:242-406
               
               
               Cow position:chr9:29091878-29092048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr9:32815725-32815882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:242-416
               
               
               Cow position:chr9:3782443-3782617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:242-424
               
               
               Cow position:chr9:38846260-38846087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:242-427
               
               
               Cow position:chr9:23541324-23541153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:242-429
               
               
               Cow position:chr9:11068387-11068202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:242-430
               
               
               Cow position:chr9:41652869-41653057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-435
               
               
               Cow position:chr9:51620521-51620708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr9:34902025-34901842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:242-437
               
               
               Cow position:chr9:40105549-40105751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:242-438
               
               
               Cow position:chr9:4128700-4128507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):181, 98

               
               
               Conread position:242-438
               
               
               Cow position:chr9:34903630-34903826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr9:1712391-1712207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-443
               
               
               Cow position:chr9:5532031-5532233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 183

               
               
               Conread position:242-446
               
               
               Cow position:chr9:61847067-61846866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:242-448
               
               
               Cow position:chr9:10144393-10144186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-448
               
               
               Cow position:chr9:59013249-59013049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:242-452
               
               
               Cow position:chr9:26279088-26278887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-454
               
               
               Cow position:chr9:29825120-29825321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr9:36066992-36067198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:242-458
               
               
               Cow position:chr9:4126805-4127022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-458
               
               
               Cow position:chr9:10666942-10666729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:242-458
               
               
               Cow position:chr9:64559801-64559591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:242-459
               
               
               Cow position:chr9:35533869-35533655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:242-459
               
               
               Cow position:chr9:55084214-55084000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:242-462
               
               
               Cow position:chr9:22696304-22696516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:242-462
               
               
               Cow position:chr9:45171083-45170869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:242-474
               
               
               Cow position:chr9:36490808-36490583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-477
               
               
               Cow position:chr9:55256467-55256235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:242-484
               
               
               Cow position:chr9:11317555-11317797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:242-491
               
               
               Cow position:chr9:10118581-10118337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 103

               
               
               Conread position:242-502
               
               
               Cow position:chr9:5227087-5226825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 184

               
               
               Conread position:242-506
               
               
               Cow position:chr9:33093037-33093288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 8

               
               
               Conread position:242-508
               
               
               Cow position:chr9:45141518-45141281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-511
               
               
               Cow position:chr9:4267900-4267644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:242-520
               
               
               Cow position:chr9:1650103-1650383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-525
               
               
               Cow position:chr9:42426962-42426679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:242-528
               
               
               Cow position:chr9:54672206-54672493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-536
               
               
               Cow position:chr9:55795844-55796124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:242-538
               
               
               Cow position:chr9:22114551-22114265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:242-541
               
               
               Cow position:chr9:34957969-34957673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-546
               
               
               Cow position:chr9:10761884-10761580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-546
               
               
               Cow position:chr9:26390851-26391148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:242-550
               
               
               Cow position:chr9:13205482-13205185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 30

               
               
               Conread position:242-556
               
               
               Cow position:chr9:42998384-42998068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-558
               
               
               Cow position:chr9:3934155-3933838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-568
               
               
               Cow position:chr9:41679829-41680137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 101

               
               
               Conread position:242-577
               
               
               Cow position:chr9:17928843-17929171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):88, 211

               
               
               Conread position:242-591
               
               
               Cow position:chr9:26057358-26057026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:242-593
               
               
               Cow position:chr9:23431060-23430718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:242-597
               
               
               Cow position:chr9:1952185-1951835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 114

               
               
               Conread position:242-599
               
               
               Cow position:chr9:20848015-20848374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-615
               
               
               Cow position:chr9:3004270-3004646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-617
               
               
               Cow position:chr9:53608311-53607939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:242-619
               
               
               Cow position:chr9:55075050-55074677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:242-620
               
               
               Cow position:chr9:31078999-31078626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:242-621
               
               
               Cow position:chr9:11299607-11299232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 114

               
               
               Conread position:242-621
               
               
               Cow position:chr9:46316700-46316329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-621
               
               
               Cow position:chr9:51105307-51104927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-623
               
               
               Cow position:chr9:17310479-17310073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:242-623
               
               
               Cow position:chr9:29006646-29007028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 78

               
               
               Conread position:242-623
               
               
               Cow position:chr9:30402337-30401956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:242-623
               
               
               Cow position:chr9:42445896-42445513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:242-623
               
               
               Cow position:chr9:44921307-44920953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr9:5393132-5393499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-624
               
               
               Cow position:chr9:11313428-11313052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:242-624
               
               
               Cow position:chr9:22361099-22361475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 46

               
               
               Conread position:242-624
               
               
               Cow position:chr9:22443544-22443151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:242-624
               
               
               Cow position:chr9:24997436-24997037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:242-625
               
               
               Cow position:chr9:4928711-4929082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr9:5500941-5501302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr9:6887651-6887263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr9:7409861-7410242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:242-625
               
               
               Cow position:chr9:12194158-12194550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:242-625
               
               
               Cow position:chr9:12379512-12379130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:242-625
               
               
               Cow position:chr9:28786409-28786026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 245

               
               
               Conread position:242-625
               
               
               Cow position:chr9:34310110-34310505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:242-625
               
               
               Cow position:chr9:35904662-35904288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 80

               
               
               Conread position:242-625
               
               
               Cow position:chr9:45974275-45974666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:242-625
               
               
               Cow position:chr9:47172125-47171738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:243-393
               
               
               Cow position:chr9:415189-415036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-442
               
               
               Cow position:chr9:24887284-24887477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:243-452
               
               
               Cow position:chr9:9405964-9405765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:243-510
               
               
               Cow position:chr9:5442076-5442337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 144

               
               
               Conread position:243-534
               
               
               Cow position:chr9:50606864-50606581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:243-619
               
               
               Cow position:chr9:22440425-22440055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):194, 59

               
               
               Conread position:243-623
               
               
               Cow position:chr9:42585544-42585169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:243-625
               
               
               Cow position:chr9:22151998-22151640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 77

               
               
               Conread position:243-625
               
               
               Cow position:chr9:26518756-26518371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-416
               
               
               Cow position:chr9:58979483-58979655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-420
               
               
               Cow position:chr9:34742638-34742470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:244-436
               
               
               Cow position:chr9:9403090-9402911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:244-618
               
               
               Cow position:chr9:22626338-22625963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-623
               
               
               Cow position:chr9:17740862-17740487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 205

               
               
               Conread position:245-362
               
               
               Cow position:chr9:8524923-8525040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:245-372
               
               
               Cow position:chr9:52638074-52637946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-429
               
               
               Cow position:chr9:9595868-9595686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:245-443
               
               
               Cow position:chr9:6225367-6225166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:245-449
               
               
               Cow position:chr9:8288704-8288904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):178, 98

               
               
               Conread position:245-460
               
               
               Cow position:chr9:50076144-50076363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:245-468
               
               
               Cow position:chr9:10010888-10011108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:245-520
               
               
               Cow position:chr9:38343977-38344253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:245-525
               
               
               Cow position:chr9:33218863-33218590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-583
               
               
               Cow position:chr9:50080960-50080623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:245-591
               
               
               Cow position:chr9:28983271-28983615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 52

               
               
               Conread position:245-619
               
               
               Cow position:chr9:3379209-3379587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 53

               
               
               Conread position:245-619
               
               
               Cow position:chr9:28726634-28726274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:245-621
               
               
               Cow position:chr9:27077160-27076798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 85

               
               
               Conread position:245-623
               
               
               Cow position:chr9:23388591-23388218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 111

               
               
               Conread position:245-623
               
               
               Cow position:chr9:31124843-31124462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-623
               
               
               Cow position:chr9:49279561-49279918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 95

               
               
               Conread position:245-624
               
               
               Cow position:chr9:32812431-32812796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 101

               
               
               Conread position:245-625
               
               
               Cow position:chr9:1520651-1520266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:245-625
               
               
               Cow position:chr9:35375514-35375884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:245-625
               
               
               Cow position:chr9:44108743-44108364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:246-517
               
               
               Cow position:chr9:21030396-21030672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-386
               
               
               Cow position:chr9:26440714-26440572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:247-392
               
               
               Cow position:chr9:6338884-6339032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-407
               
               
               Cow position:chr9:61493109-61493272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-426
               
               
               Cow position:chr9:31814286-31814114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:247-429
               
               
               Cow position:chr9:43207291-43207112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:247-453
               
               
               Cow position:chr9:25958507-25958704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:247-453
               
               
               Cow position:chr9:34468495-34468302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-487
               
               
               Cow position:chr9:41416440-41416675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:247-504
               
               
               Cow position:chr9:37528542-37528798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:247-533
               
               
               Cow position:chr9:32371674-32371396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:247-559
               
               
               Cow position:chr9:25964742-25964427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:247-623
               
               
               Cow position:chr9:54997939-54997580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 203

               
               
               Conread position:247-624
               
               
               Cow position:chr9:34919174-34918821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:248-349
               
               
               Cow position:chr9:30124010-30124111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-408
               
               
               Cow position:chr9:52131107-52131264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:249-621
               
               
               Cow position:chr9:21460062-21459703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:249-625
               
               
               Cow position:chr9:35100958-35101343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 96

               
               
               Conread position:250-624
               
               
               Cow position:chr9:5509813-5510186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:250-624
               
               
               Cow position:chr9:9490882-9491251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:250-624
               
               
               Cow position:chr9:24726588-24726217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:250-624
               
               
               Cow position:chr9:28947946-28948320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:251-452
               
               
               Cow position:chr9:9416312-9416117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:252-458
               
               
               Cow position:chr9:29684241-29684441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):106, 50

               
               
               Conread position:253-474
               
               
               Cow position:chr9:1350352-1350134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:253-623
               
               
               Cow position:chr9:3410864-3411229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:253-624
               
               
               Cow position:chr9:57951228-57950850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:254-459
               
               
               Cow position:chr9:18073019-18072821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:254-557
               
               
               Cow position:chr9:975101-975418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:255-447
               
               
               Cow position:chr9:51204817-51205006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 162

               
               
               Conread position:255-624
               
               
               Cow position:chr9:17411095-17410727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:256-407
               
               
               Cow position:chr9:31823305-31823156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:258-384
               
               
               Cow position:chr9:18827820-18827948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:258-505
               
               
               Cow position:chr9:3924720-3924961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):201, 86

               
               
               Conread position:258-624
               
               
               Cow position:chr9:20989358-20988980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:261-570
               
               
               Cow position:chr9:33823201-33823499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:264-393
               
               
               Cow position:chr9:50703013-50702881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:264-437
               
               
               Cow position:chr9:18419274-18419438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 81

               
               
               Conread position:264-442
               
               
               Cow position:chr9:55287792-55287611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:264-448
               
               
               Cow position:chr9:9624925-9624742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:264-468
               
               
               Cow position:chr9:48343707-48343907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:264-624
               
               
               Cow position:chr9:20901019-20900653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:267-623
               
               
               Cow position:chr9:15805816-15805464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:268-422
               
               
               Cow position:chr9:62134510-62134362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:270-583
               
               
               Cow position:chr9:61739029-61739335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:271-444
               
               
               Cow position:chr9:58131615-58131442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-452
               
               
               Cow position:chrX:21004706-21004450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 143

               
               
               Conread position:214-625
               
               
               Cow position:chrX:39126333-39125907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:215-416
               
               
               Cow position:chrX:30832846-30833044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:215-596
               
               
               Cow position:chrX:41743916-41743535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:215-623
               
               
               Cow position:chrX:917361-917781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:215-624
               
               
               Cow position:chrX:40480865-40481277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 202

               
               
               Conread position:216-509
               
               
               Cow position:chrX:8925705-8925415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:217-358
               
               
               Cow position:chrX:11085059-11085201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:217-407
               
               
               Cow position:chrX:43730219-43730404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):5, 108

               
               
               Conread position:217-449
               
               
               Cow position:chrX:37910444-37910222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:217-480
               
               
               Cow position:chrX:2933723-2933460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:217-488
               
               
               Cow position:chrX:17541959-17541694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:217-528
               
               
               Cow position:chrX:4404537-4404225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:217-607
               
               
               Cow position:chrX:38218707-38218329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:217-625
               
               
               Cow position:chrX:26276143-26275732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:221-398
               
               
               Cow position:chrX:7336826-7336646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:223-375
               
               
               Cow position:chrX:27228124-27227966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:223-424
               
               
               Cow position:chrX:46587816-46587611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:223-601
               
               
               Cow position:chrX:41199101-41198703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:223-604
               
               
               Cow position:chrX:7718850-7718466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:223-610
               
               
               Cow position:chrX:5872315-5871921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 248

               
               
               Conread position:223-623
               
               
               Cow position:chrX:161407-161023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:223-623
               
               
               Cow position:chrX:17498079-17497691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:223-624
               
               
               Cow position:chrX:27705582-27705187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:223-625
               
               
               Cow position:chrX:20339895-20340296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:224-343
               
               
               Cow position:chrX:43115144-43115022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:224-458
               
               
               Cow position:chrX:24234485-24234720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:224-565
               
               
               Cow position:chrX:44096550-44096206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-624
               
               
               Cow position:chrX:8797248-8796845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:225-390
               
               
               Cow position:chrX:46433486-46433310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:225-452
               
               
               Cow position:chrX:9954132-9953907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:226-355
               
               
               Cow position:chrX:9365683-9365815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:226-383
               
               
               Cow position:chrX:41992052-41992207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:226-429
               
               
               Cow position:chrX:3579938-3579735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:226-452
               
               
               Cow position:chrX:7513503-7513282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 131

               
               
               Conread position:226-459
               
               
               Cow position:chrX:9635198-9635422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:226-499
               
               
               Cow position:chrX:42874977-42874697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:226-529
               
               
               Cow position:chrX:7351294-7350991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 172

               
               
               Conread position:226-618
               
               
               Cow position:chrX:151897-151503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:226-625
               
               
               Cow position:chrX:14599525-14599129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 215

               
               
               Conread position:226-625
               
               
               Cow position:chrX:31489511-31489105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:227-393
               
               
               Cow position:chrX:18485790-18485619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:227-450
               
               
               Cow position:chrX:42338954-42339168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:227-499
               
               
               Cow position:chrX:2467874-2467599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 232

               
               
               Conread position:228-479
               
               
               Cow position:chrX:678581-678831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 26

               
               
               Conread position:228-516
               
               
               Cow position:chrX:19015424-19015144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:228-624
               
               
               Cow position:chrX:18694935-18695332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:229-456
               
               
               Cow position:chrX:11938943-11939162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:229-622
               
               
               Cow position:chrX:23122376-23121980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 266

               
               
               Conread position:230-441
               
               
               Cow position:chrX:16541688-16541899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:238-408
               
               
               Cow position:chrX:24149617-24149449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:239-349
               
               
               Cow position:chrX:37986202-37986098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:239-358
               
               
               Cow position:chrX:34314004-34313889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-450
               
               
               Cow position:chrX:6278525-6278738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:239-496
               
               
               Cow position:chrX:26709584-26709326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:239-504
               
               
               Cow position:chrX:45939474-45939732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:239-607
               
               
               Cow position:chrX:34401973-34401609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 121

               
               
               Conread position:239-621
               
               
               Cow position:chrX:11656067-11655674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:239-625
               
               
               Cow position:chrX:45113594-45113229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:240-358
               
               
               Cow position:chrX:47279958-47280076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-425
               
               
               Cow position:chrX:32420194-32420011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:240-456
               
               
               Cow position:chrX:21672530-21672313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-504
               
               
               Cow position:chrX:48195064-48195327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:240-521
               
               
               Cow position:chrX:30133347-30133627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:240-621
               
               
               Cow position:chrX:34376920-34376551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 38

               
               
               Conread position:240-624
               
               
               Cow position:chrX:12249776-12249395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:240-624
               
               
               Cow position:chrX:21665618-21665997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:240-625
               
               
               Cow position:chrX:8900004-8899618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 331

               
               
               Conread position:241-442
               
               
               Cow position:chrX:18651068-18651266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:241-517
               
               
               Cow position:chrX:1176006-1176273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:241-624
               
               
               Cow position:chrX:2147318-2146906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:241-625
               
               
               Cow position:chrX:24201160-24200788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:242-327
               
               
               Cow position:chrX:29229982-29229896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-334
               
               
               Cow position:chrX:26881596-26881688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-343
               
               
               Cow position:chrX:19273750-19273852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-353
               
               
               Cow position:chrX:616290-616401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-358
               
               
               Cow position:chrX:29723714-29723597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-362
               
               
               Cow position:chrX:10366254-10366374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-366
               
               
               Cow position:chrX:5118531-5118654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:242-367
               
               
               Cow position:chrX:21986320-21986446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-375
               
               
               Cow position:chrX:31252390-31252257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-383
               
               
               Cow position:chrX:32821002-32820863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:242-389
               
               
               Cow position:chrX:34792336-34792482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-393
               
               
               Cow position:chrX:40321837-40321686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-402
               
               
               Cow position:chrX:36067985-36067835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:242-404
               
               
               Cow position:chrX:31256838-31256681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:242-410
               
               
               Cow position:chrX:45874971-45874806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:242-416
               
               
               Cow position:chrX:1499637-1499471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:242-416
               
               
               Cow position:chrX:4091620-4091449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:242-420
               
               
               Cow position:chrX:36961615-36961432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:242-420
               
               
               Cow position:chrX:37781139-37781320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:242-425
               
               
               Cow position:chrX:46315405-46315588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-426
               
               
               Cow position:chrX:28835933-28836111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):176, 39

               
               
               Conread position:242-426
               
               
               Cow position:chrX:45110628-45110447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:242-429
               
               
               Cow position:chrX:29542247-29542430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:242-438
               
               
               Cow position:chrX:41271683-41271879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 147

               
               
               Conread position:242-443
               
               
               Cow position:chrX:4750332-4750523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:242-443
               
               
               Cow position:chrX:20791846-20792043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:242-443
               
               
               Cow position:chrX:21642506-21642703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:242-445
               
               
               Cow position:chrX:48684253-48684450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:242-446
               
               
               Cow position:chrX:25411813-25411612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:242-447
               
               
               Cow position:chrX:10959425-10959631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 202

               
               
               Conread position:242-448
               
               
               Cow position:chrX:42381130-42381330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:242-450
               
               
               Cow position:chrX:13382302-13382092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:242-452
               
               
               Cow position:chrX:33493749-33493541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-452
               
               
               Cow position:chrX:38549419-38549214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:242-452
               
               
               Cow position:chrX:41884442-41884652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-454
               
               
               Cow position:chrX:37119566-37119363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-454
               
               
               Cow position:chrX:38853169-38852960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 18

               
               
               Conread position:242-456
               
               
               Cow position:chrX:41166992-41167202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-459
               
               
               Cow position:chrX:39938551-39938758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:242-460
               
               
               Cow position:chrX:32981792-32982007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-460
               
               
               Cow position:chrX:35284592-35284375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:242-463
               
               
               Cow position:chrX:9572500-9572278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-463
               
               
               Cow position:chrX:9976413-9976191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-470
               
               
               Cow position:chrX:23497696-23497915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-471
               
               
               Cow position:chrX:24365853-24366082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 172

               
               
               Conread position:242-476
               
               
               Cow position:chrX:32020147-32020380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:242-477
               
               
               Cow position:chrX:20151822-20151591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:242-480
               
               
               Cow position:chrX:27431942-27432180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 230

               
               
               Conread position:242-485
               
               
               Cow position:chrX:2580376-2580132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-485
               
               
               Cow position:chrX:17725946-17725711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-488
               
               
               Cow position:chrX:45403855-45404104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-498
               
               
               Cow position:chrX:9997363-9997611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:242-498
               
               
               Cow position:chrX:40647958-40647698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:242-501
               
               
               Cow position:chrX:37836561-37836306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:242-516
               
               
               Cow position:chrX:41238381-41238661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:242-517
               
               
               Cow position:chrX:35273327-35273045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:242-528
               
               
               Cow position:chrX:4869520-4869233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-529
               
               
               Cow position:chrX:21011344-21011633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:242-544
               
               
               Cow position:chrX:5638196-5638494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 40

               
               
               Conread position:242-544
               
               
               Cow position:chrX:33466582-33466291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:242-546
               
               
               Cow position:chrX:6234480-6234762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:242-556
               
               
               Cow position:chrX:43527482-43527164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:242-558
               
               
               Cow position:chrX:30686616-30686936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-561
               
               
               Cow position:chrX:23216084-23215764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-564
               
               
               Cow position:chrX:45263092-45263416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:242-566
               
               
               Cow position:chrX:20038243-20038566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:242-566
               
               
               Cow position:chrX:35612568-35612892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 213

               
               
               Conread position:242-566
               
               
               Cow position:chrX:44396990-44396672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):124, 58

               
               
               Conread position:242-568
               
               
               Cow position:chrX:45414328-45414648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-570
               
               
               Cow position:chrX:15577664-15577993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-573
               
               
               Cow position:chrX:40557709-40558030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:242-579
               
               
               Cow position:chrX:45932981-45932643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:242-582
               
               
               Cow position:chrX:34502894-34502559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:242-592
               
               
               Cow position:chrX:7509114-7508754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 146

               
               
               Conread position:242-592
               
               
               Cow position:chrX:11717816-11718152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 46

               
               
               Conread position:242-595
               
               
               Cow position:chrX:16289585-16289939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-606
               
               
               Cow position:chrX:43979597-43979230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 308

               
               
               Conread position:242-616
               
               
               Cow position:chrX:19019134-19019490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:242-617
               
               
               Cow position:chrX:36373537-36373145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-617
               
               
               Cow position:chrX:40035471-40035868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 50

               
               
               Conread position:242-618
               
               
               Cow position:chrX:13647814-13648184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:242-619
               
               
               Cow position:chrX:19196541-19196919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-620
               
               
               Cow position:chrX:10831521-10831914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:242-621
               
               
               Cow position:chrX:2160742-2160362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-621
               
               
               Cow position:chrX:6414020-6413643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:242-621
               
               
               Cow position:chrX:7445060-7444681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-621
               
               
               Cow position:chrX:8434230-8434606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 316

               
               
               Conread position:242-621
               
               
               Cow position:chrX:10428516-10428137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-621
               
               
               Cow position:chrX:13029681-13030044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:242-621
               
               
               Cow position:chrX:13785391-13785781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 149

               
               
               Conread position:242-621
               
               
               Cow position:chrX:14134452-14134072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:242-621
               
               
               Cow position:chrX:24424416-24424795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 85

               
               
               Conread position:242-621
               
               
               Cow position:chrX:25458660-25459040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:242-621
               
               
               Cow position:chrX:29066414-29066049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:242-621
               
               
               Cow position:chrX:38094549-38094928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:242-621
               
               
               Cow position:chrX:38967620-38967248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:242-621
               
               
               Cow position:chrX:42994585-42994211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:242-622
               
               
               Cow position:chrX:35387930-35388311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:242-623
               
               
               Cow position:chrX:6544227-6543851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-623
               
               
               Cow position:chrX:27516501-27516129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:242-624
               
               
               Cow position:chrX:26440806-26441186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:242-624
               
               
               Cow position:chrX:27442583-27442958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:242-624
               
               
               Cow position:chrX:38964077-38963707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:242-625
               
               
               Cow position:chrX:323874-323508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):160, 153

               
               
               Conread position:242-625
               
               
               Cow position:chrX:1616072-1616464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:1946739-1947128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:3464101-3464483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-625
               
               
               Cow position:chrX:4343726-4343342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:5123384-5123766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 318

               
               
               Conread position:242-625
               
               
               Cow position:chrX:6373157-6372774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:242-625
               
               
               Cow position:chrX:6869585-6869970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:10916023-10915631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:11975518-11975894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:242-625
               
               
               Cow position:chrX:14121775-14122158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 289

               
               
               Conread position:242-625
               
               
               Cow position:chrX:14463290-14462905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chrX:14598822-14598439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 342

               
               
               Conread position:242-625
               
               
               Cow position:chrX:16466278-16465893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:17055546-17055162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chrX:20320791-20321174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:242-625
               
               
               Cow position:chrX:20742963-20742579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:21686591-21686213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:242-625
               
               
               Cow position:chrX:22078304-22077920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:22772632-22772248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:25338157-25337786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 317

               
               
               Conread position:242-625
               
               
               Cow position:chrX:29841192-29841576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:34532491-34532124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:35533828-35533444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:242-625
               
               
               Cow position:chrX:37232385-37232004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 229

               
               
               Conread position:242-625
               
               
               Cow position:chrX:37816565-37816181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:38230290-38230674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:40269460-40269069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:40452237-40452628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:42460157-42459765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:45237443-45237059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:45904155-45903771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-625
               
               
               Cow position:chrX:46532529-46532927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 55

               
               
               Conread position:243-370
               
               
               Cow position:chrX:20584295-20584166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:243-395
               
               
               Cow position:chrX:45759363-45759220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:243-425
               
               
               Cow position:chrX:10252210-10252389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:243-452
               
               
               Cow position:chrX:23514044-23514252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 123

               
               
               Conread position:243-584
               
               
               Cow position:chrX:11806042-11806383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 152

               
               
               Conread position:243-596
               
               
               Cow position:chrX:33855262-33855618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 104

               
               
               Conread position:243-621
               
               
               Cow position:chrX:14883987-14884365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 289

               
               
               Conread position:243-625
               
               
               Cow position:chrX:671033-671416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-625
               
               
               Cow position:chrX:8530516-8530133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-625
               
               
               Cow position:chrX:14800842-14801225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:243-625
               
               
               Cow position:chrX:20801746-20801364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 84

               
               
               Conread position:244-393
               
               
               Cow position:chrX:27145593-27145447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):147, 101

               
               
               Conread position:244-485
               
               
               Cow position:chrX:20579776-20580019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 147

               
               
               Conread position:244-493
               
               
               Cow position:chrX:2964024-2963775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:244-528
               
               
               Cow position:chrX:3895001-3895286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-570
               
               
               Cow position:chrX:44387960-44387638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):62, 227

               
               
               Conread position:244-621
               
               
               Cow position:chrX:3417165-3417542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:244-625
               
               
               Cow position:chrX:2104376-2103998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:244-625
               
               
               Cow position:chrX:5423091-5423473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-625
               
               
               Cow position:chrX:27305901-27305520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 305

               
               
               Conread position:244-625
               
               
               Cow position:chrX:32011006-32010624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-349
               
               
               Cow position:chrX:41027125-41027022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-357
               
               
               Cow position:chrX:11614669-11614556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-376
               
               
               Cow position:chrX:36356082-36355957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:245-406
               
               
               Cow position:chrX:42235559-42235722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:245-407
               
               
               Cow position:chrX:31311996-31311836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:137
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:245-407
               
               
               Cow position:chrX:44656992-44657154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:245-438
               
               
               Cow position:chrX:36283321-36283125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-438
               
               
               Cow position:chrX:46072851-46073042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:245-443
               
               
               Cow position:chrX:29509472-29509669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:245-452
               
               
               Cow position:chrX:16416477-16416274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:245-452
               
               
               Cow position:chrX:43049318-43049108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-458
               
               
               Cow position:chrX:17662624-17662837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-458
               
               
               Cow position:chrX:42282397-42282194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):206, 52

               
               
               Conread position:245-460
               
               
               Cow position:chrX:2648384-2648592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-495
               
               
               Cow position:chrX:12018261-12017998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:245-495
               
               
               Cow position:chrX:30922155-30921908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:245-504
               
               
               Cow position:chrX:46032751-46033004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:245-579
               
               
               Cow position:chrX:2786589-2786907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 36

               
               
               Conread position:245-582
               
               
               Cow position:chrX:34662878-34663224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:245-591
               
               
               Cow position:chrX:28105889-28105553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:245-620
               
               
               Cow position:chrX:30543319-30543689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 57

               
               
               Conread position:245-621
               
               
               Cow position:chrX:38439447-38439073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 278

               
               
               Conread position:245-623
               
               
               Cow position:chrX:5017445-5017811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 97

               
               
               Conread position:245-623
               
               
               Cow position:chrX:21593257-21592881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 220

               
               
               Conread position:245-624
               
               
               Cow position:chrX:42461775-42462154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 83

               
               
               Conread position:245-625
               
               
               Cow position:chrX:15139576-15139956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 111

               
               
               Conread position:245-625
               
               
               Cow position:chrX:35681310-35680937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:245-625
               
               
               Cow position:chrX:41878963-41879337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:246-458
               
               
               Cow position:chrX:39558382-39558588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 82

               
               
               Conread position:246-562
               
               
               Cow position:chrX:47481770-47481456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:246-618
               
               
               Cow position:chrX:42171328-42171699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 177

               
               
               Conread position:246-623
               
               
               Cow position:chrX:3654576-3654204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:246-623
               
               
               Cow position:chrX:7571871-7571498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 56

               
               
               Conread position:247-391
               
               
               Cow position:chrX:22387275-22387421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-395
               
               
               Cow position:chrX:36061125-36060974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-416
               
               
               Cow position:chrX:45149148-45148976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-430
               
               
               Cow position:chrX:27174964-27174782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:247-438
               
               
               Cow position:chrX:29601863-29602053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:247-471
               
               
               Cow position:chrX:28878202-28878415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:247-506
               
               
               Cow position:chrX:46722767-46723029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-511
               
               
               Cow position:chrX:40183376-40183641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 249

               
               
               Conread position:247-525
               
               
               Cow position:chrX:14924968-14924693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:247-570
               
               
               Cow position:chrX:45089416-45089085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:247-571
               
               
               Cow position:chrX:47967568-47967247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:247-582
               
               
               Cow position:chrX:31250354-31250028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 53

               
               
               Conread position:247-623
               
               
               Cow position:chrX:48287482-48287836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:247-624
               
               
               Cow position:chrX:24287958-24288319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:247-624
               
               
               Cow position:chrX:28846914-28847288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:247-624
               
               
               Cow position:chrX:35609956-35609580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:247-624
               
               
               Cow position:chrX:40826784-40827151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:248-413
               
               
               Cow position:chrX:47484299-47484467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:248-442
               
               
               Cow position:chrX:16323998-16324187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:248-625
               
               
               Cow position:chrX:7806348-7805969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 148

               
               
               Conread position:249-498
               
               
               Cow position:chrX:8731052-8730799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:250-389
               
               
               Cow position:chrX:4399094-4398954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:250-406
               
               
               Cow position:chrX:2764830-2764681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:250-410
               
               
               Cow position:chrX:37541090-37540932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:250-422
               
               
               Cow position:chrX:17908323-17908488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:250-438
               
               
               Cow position:chrX:1503302-1503119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:250-447
               
               
               Cow position:chrX:13265659-13265849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:250-452
               
               
               Cow position:chrX:2206586-2206778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:250-452
               
               
               Cow position:chrX:9855268-9855066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 6

               
               
               Conread position:250-454
               
               
               Cow position:chrX:27394056-27394250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:252-517
               
               
               Cow position:chrX:44834847-44835115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-624
               
               
               Cow position:chrX:4123800-4123430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:255-407
               
               
               Cow position:chrX:23785621-23785464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:255-507
               
               
               Cow position:chrX:22482727-22482978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:257-556
               
               
               Cow position:chrX:15545851-15545559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:257-610
               
               
               Cow position:chrX:37072366-37072014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:258-366
               
               
               Cow position:chrX:12405427-12405539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:258-570
               
               
               Cow position:chrX:37843679-37843368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:258-620
               
               
               Cow position:chrX:13868659-13868295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:258-622
               
               
               Cow position:chrX:12309429-12309790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:258-625
               
               
               Cow position:chrX:12116002-12115634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 194

               
               
               Conread position:261-452
               
               
               Cow position:chrX:34543741-34543553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:263-623
               
               
               Cow position:chrX:11082663-11083019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 98

               
               
               Conread position:264-454
               
               
               Cow position:chrX:30420979-30421175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 158

               
               
               Conread position:264-623
               
               
               Cow position:chrX:17794933-17794590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:264-623
               
               
               Cow position:chrX:35268832-35268488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:264-624
               
               
               Cow position:chrX:4632899-4633263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:270-618
               
               
               Cow position:chrX:26625726-26626089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:270-621
               
               
               Cow position:chrX:20582972-20582627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 57