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Cow genome map

           
Conread name:
           
Pig4-TMW8021F01
        

               
Conread position:
               
167-471
               

               
Cow position:
               
chr1:87831245-87830933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
167-799
               

               
Cow position:
               
chr1:19145189-19145845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
175-464
               

               
Cow position:
               
chr1:25802615-25802326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
174, 41
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr1:66776665-66776374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
206, 86
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr1:49962088-49962379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
172, 37
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr1:58385232-58384944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr1:64609352-64609652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
184-458
               

               
Cow position:
               
chr1:38382162-38382436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:73017514-73017762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
156, 12
               

               
Conread position:
               
195-463
               

               
Cow position:
               
chr1:95071412-95071145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr1:18224178-18224445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr1:86020386-86020657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
196-805
               

               
Cow position:
               
chr1:61221394-61220748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 380
               

               
Conread position:
               
199-471
               

               
Cow position:
               
chr1:33855227-33854958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 63
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr1:71558790-71559058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
153, 71
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr1:72766076-72766344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr1:76208060-76208331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr1:78921050-78921317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-710
               

               
Cow position:
               
chr1:38423401-38422879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
200-756
               

               
Cow position:
               
chr1:81925236-81925801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
203-466
               

               
Cow position:
               
chr1:98612905-98612644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
185, 24
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr1:16298159-16297886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 59
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr1:22516246-22515973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
64, 59
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr1:43003981-43004246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
233-470
               

               
Cow position:
               
chr1:19635693-19635450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
243-803
               

               
Cow position:
               
chr1:30785620-30786197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 129
               

               
Conread position:
               
247-610
               

               
Cow position:
               
chr1:71332165-71332549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
274-463
               

               
Cow position:
               
chr1:39249335-39249528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
293-466
               

               
Cow position:
               
chr1:63454301-63454478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
318-788
               

               
Cow position:
               
chr1:100339765-100340246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 256
               

               
Conread position:
               
479-805
               

               
Cow position:
               
chr1:12468143-12468475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr10:27173700-27174010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
175-803
               

               
Cow position:
               
chr10:58937638-58938298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
179-439
               

               
Cow position:
               
chr10:29816277-29816021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
170, 80
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr10:56376123-56376430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr10:63647301-63647596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
179-554
               

               
Cow position:
               
chr10:39620418-39620043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
207, 55
               

               
Conread position:
               
179-599
               

               
Cow position:
               
chr10:46243129-46242697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
196, 82
               

               
Conread position:
               
179-644
               

               
Cow position:
               
chr10:43285635-43286114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-696
               

               
Cow position:
               
chr10:30466229-30466773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 110
               

               
Conread position:
               
186-471
               

               
Cow position:
               
chr10:60366923-60366634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
160, 76
               

               
Conread position:
               
191-466
               

               
Cow position:
               
chr10:48377955-48378225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr10:25257264-25256984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr10:39438643-39438917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr10:11275322-11275049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
189, 66
               

               
Conread position:
               
200-439
               

               
Cow position:
               
chr10:25054010-25054244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chr10:50615995-50615732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
153, 71
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr10:7894463-7894731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr10:17653241-17653512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
200-718
               

               
Cow position:
               
chr10:44202729-44203262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr10:41384302-41384562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 69
               

               
Conread position:
               
221-787
               

               
Cow position:
               
chr10:24022634-24023217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
346-803
               

               
Cow position:
               
chr10:61460124-61460587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 162
               

               
Conread position:
               
514-805
               

               
Cow position:
               
chr10:50518507-50518798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
246, 42
               

               
Conread position:
               
589-805
               

               
Cow position:
               
chr10:3317315-3317098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
177, 164
               

               
Conread position:
               
132-447
               

               
Cow position:
               
chr11:40300070-40300391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
175-467
               

               
Cow position:
               
chr11:25184623-25184330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
206, 24
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr11:51177209-51176914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
179-447
               

               
Cow position:
               
chr11:9230636-9230371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr11:79740912-79741198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr11:40772002-40772285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
169, 83
               

               
Conread position:
               
179-469
               

               
Cow position:
               
chr11:69565942-69565658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-470
               

               
Cow position:
               
chr11:26560676-26560964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
185, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr11:10948778-10949066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr11:12896404-12896106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr11:15279174-15279469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr11:35541433-35541722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-813
               

               
Cow position:
               
chr11:7705316-7704670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr11:81337287-81337556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
154, 54
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr11:4625132-4625414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr11:33364027-33363747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr11:52483988-52483714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr11:82790982-82790708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
171, 31
               

               
Conread position:
               
196-468
               

               
Cow position:
               
chr11:59430462-59430737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
155, 10
               

               
Conread position:
               
196-782
               

               
Cow position:
               
chr11:41726412-41725813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 179
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr11:76961213-76960941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
190, 78
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chr11:24030420-24030149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr11:26592157-26592423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr11:35141713-35141981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr11:73138194-73137933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-787
               

               
Cow position:
               
chr11:47972245-47972843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr11:46247118-46246844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
205-476
               

               
Cow position:
               
chr11:16262381-16262654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr11:28382277-28382015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr11:21396042-21395807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chr11:8552381-8552150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
258-470
               

               
Cow position:
               
chr11:42681976-42682184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
262-470
               

               
Cow position:
               
chr11:26467868-26467656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
279-471
               

               
Cow position:
               
chr11:27055184-27055368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
590-773
               

               
Cow position:
               
chr11:68546867-68546685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
178-471
               

               
Cow position:
               
chr12:24020405-24020107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr12:16961270-16960989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
168, 68
               

               
Conread position:
               
185-464
               

               
Cow position:
               
chr12:541580-541855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
201, 14
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chr12:6551517-6551224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
192-446
               

               
Cow position:
               
chr12:27094130-27094386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr12:8772797-8773086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr12:36204234-36204510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 66
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr12:36199964-36199687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr12:5750818-5751096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
200-467
               

               
Cow position:
               
chr12:36483632-36483362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr12:5813377-5813113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr12:10188847-10189116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
203-468
               

               
Cow position:
               
chr12:11082731-11082462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
274-581
               

               
Cow position:
               
chr12:36532027-36532346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
279-464
               

               
Cow position:
               
chr12:20213849-20213661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
288-468
               

               
Cow position:
               
chr12:10470910-10470727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
474-785
               

               
Cow position:
               
chr12:15939274-15939586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
127, 100
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr13:5317037-5317344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr13:32816949-32817255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr13:19425645-19425350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr13:6602380-6602090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr13:681775-681481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
183-471
               

               
Cow position:
               
chr13:1368287-1368578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
186-446
               

               
Cow position:
               
chr13:14104554-14104299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr13:36717041-36716773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
195-467
               

               
Cow position:
               
chr13:1881807-1882081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
158, 58
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr13:21987009-21986731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr13:46465510-46465788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr13:12389681-12389948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr13:54975512-54975244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr13:32081573-32081306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
204-472
               

               
Cow position:
               
chr13:52077527-52077258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
214-803
               

               
Cow position:
               
chr13:55406379-55405759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 48
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr13:49848175-49848438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
233-471
               

               
Cow position:
               
chr13:10733635-10733397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
235-460
               

               
Cow position:
               
chr13:47370142-47369912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
236-464
               

               
Cow position:
               
chr13:39593270-39593040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chr13:48627134-48627365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
284-468
               

               
Cow position:
               
chr13:17328299-17328488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 175
               

               
Conread position:
               
324-806
               

               
Cow position:
               
chr13:52251475-52250971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 256
               

               
Conread position:
               
132-453
               

               
Cow position:
               
chr14:20518103-20518428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
167-484
               

               
Cow position:
               
chr14:18952543-18952230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
170-466
               

               
Cow position:
               
chr14:12739443-12739744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
171-774
               

               
Cow position:
               
chr14:28690539-28691139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
176-447
               

               
Cow position:
               
chr14:20766000-20765737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
177-468
               

               
Cow position:
               
chr14:12483983-12483701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
198, 85
               

               
Conread position:
               
177-805
               

               
Cow position:
               
chr14:42849025-42849676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 86
               

               
Conread position:
               
178-463
               

               
Cow position:
               
chr14:11565129-11564842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
169, 85
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr14:4173810-4174102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr14:21087257-21087541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 75
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr14:31399912-31400203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
109, 83
               

               
Conread position:
               
179-470
               

               
Cow position:
               
chr14:40346848-40346560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
174, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr14:8902719-8902439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr14:19957579-19957290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr14:22046980-22047269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
195-462
               

               
Cow position:
               
chr14:11803974-11804244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr14:7599872-7599596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr14:19595300-19595025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr14:10907065-10907344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr14:38646074-38646351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
195-559
               

               
Cow position:
               
chr14:24837387-24837016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
98, 81
               

               
Conread position:
               
195-805
               

               
Cow position:
               
chr14:24989732-24990353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
197-468
               

               
Cow position:
               
chr14:47043497-47043232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
200-463
               

               
Cow position:
               
chr14:13990145-13990410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr14:14442874-14443142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr14:46848478-46848746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-758
               

               
Cow position:
               
chr14:28350145-28350717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr14:40999438-40999711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
157, 72
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr14:21727512-21727250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr14:44283097-44282888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
271-805
               

               
Cow position:
               
chr14:2298585-2298017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 433
               

               
Conread position:
               
276-471
               

               
Cow position:
               
chr14:18983926-18983724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
606-805
               

               
Cow position:
               
chr14:29586408-29586213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
176-441
               

               
Cow position:
               
chr15:45669094-45669365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
176-485
               

               
Cow position:
               
chr15:37632530-37632226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
170, 57
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr15:3538960-3538669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
173, 84
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr15:25825481-25825194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 83
               

               
Conread position:
               
179-761
               

               
Cow position:
               
chr15:30725645-30726257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
183-439
               

               
Cow position:
               
chr15:17260784-17260531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
190-471
               

               
Cow position:
               
chr15:11957934-11958216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr15:6282554-6282284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
152, 25
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr15:22160971-22161245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
151, 54
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr15:10839540-10839264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
196-444
               

               
Cow position:
               
chr15:50947462-50947716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr15:10034101-10034369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr15:20404111-20404379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr15:14757763-14757487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
201-625
               

               
Cow position:
               
chr15:21657767-21657344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr15:31918612-31918879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
203-473
               

               
Cow position:
               
chr15:46461052-46460780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
146, 50
               

               
Conread position:
               
233-468
               

               
Cow position:
               
chr15:48841840-48842073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
118, 7
               

               
Conread position:
               
240-472
               

               
Cow position:
               
chr15:22855018-22855254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
243-471
               

               
Cow position:
               
chr15:9437088-9436859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
253-471
               

               
Cow position:
               
chr15:40065204-40064983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
285-463
               

               
Cow position:
               
chr15:1760989-1760809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 138
               

               
Conread position:
               
583-803
               

               
Cow position:
               
chr15:23172916-23173139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
166-463
               

               
Cow position:
               
chr16:8176962-8177261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr16:33133301-33133020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr16:24209155-24209438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
174, 82
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr16:24926296-24926003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr16:38527620-38527916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
195-457
               

               
Cow position:
               
chr16:36710428-36710164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr16:16606004-16605727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr16:20260126-20259849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
195-479
               

               
Cow position:
               
chr16:17605986-17605698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chr16:37445202-37445464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
201-463
               

               
Cow position:
               
chr16:19152376-19152113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 62
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr16:45157748-45158014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
265-599
               

               
Cow position:
               
chr16:19015322-19015678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
275-471
               

               
Cow position:
               
chr16:43743296-43743496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
474-788
               

               
Cow position:
               
chr16:14382529-14382221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
135, 157
               

               
Conread position:
               
175-468
               

               
Cow position:
               
chr17:8230120-8229814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
175-470
               

               
Cow position:
               
chr17:18070544-18070226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr17:30413763-30413469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr17:28467543-28467261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr17:8926474-8926765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 83
               

               
Conread position:
               
179-483
               

               
Cow position:
               
chr17:24313463-24313156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
172, 97
               

               
Conread position:
               
183-463
               

               
Cow position:
               
chr17:32456648-32456925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
83, 79
               

               
Conread position:
               
191-471
               

               
Cow position:
               
chr17:9906142-9905861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr17:19405511-19405793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
195-701
               

               
Cow position:
               
chr17:2270506-2269991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 67
               

               
Conread position:
               
196-764
               

               
Cow position:
               
chr17:35619711-35620311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr17:35180539-35180270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
175, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr17:27791011-27791279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
215-466
               

               
Cow position:
               
chr17:20808252-20807997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
257-471
               

               
Cow position:
               
chr17:3139497-3139283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
661-813
               

               
Cow position:
               
chr17:13688889-13689043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 149
               

               
Conread position:
               
97-471
               

               
Cow position:
               
chr18:37611535-37611909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr18:1663032-1663349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr18:30231534-30231831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
171, 77
               

               
Conread position:
               
179-465
               

               
Cow position:
               
chr18:10663367-10663092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
172, 30
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr18:6833853-6834139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr18:15484914-15485204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr18:17228421-17228711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr18:32860329-32860038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 49
               

               
Conread position:
               
179-475
               

               
Cow position:
               
chr18:14121763-14121464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
173, 96
               

               
Conread position:
               
181-468
               

               
Cow position:
               
chr18:54058815-54059107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
182-764
               

               
Cow position:
               
chr18:43130098-43129502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
190-471
               

               
Cow position:
               
chr18:48527233-48527516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
161, 11
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr18:10101128-10100850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr18:36477817-36477539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
195-467
               

               
Cow position:
               
chr18:29224312-29224043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
185, 46
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr18:30567134-30567407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr18:33883262-33883546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr18:48392500-48392223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
151, 79
               

               
Conread position:
               
195-565
               

               
Cow position:
               
chr18:23656813-23656432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr18:4578830-4579101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
163, 66
               

               
Conread position:
               
196-475
               

               
Cow position:
               
chr18:52596060-52595784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
200-463
               

               
Cow position:
               
chr18:34021084-34020818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr18:16082493-16082225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr18:26242438-26242721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
201-642
               

               
Cow position:
               
chr18:30198817-30198366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
209-471
               

               
Cow position:
               
chr18:43638400-43638130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
215-790
               

               
Cow position:
               
chr18:14480112-14479526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr18:37868875-37869127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
244-467
               

               
Cow position:
               
chr18:5570489-5570264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chr18:43112460-43112664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr18:38341607-38341808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
284-791
               

               
Cow position:
               
chr18:34052380-34052910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 136
               

               
Conread position:
               
285-466
               

               
Cow position:
               
chr18:1664350-1664534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
293-468
               

               
Cow position:
               
chr18:54166735-54166914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
602-805
               

               
Cow position:
               
chr18:33851105-33850895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
178-442
               

               
Cow position:
               
chr19:14704876-14704610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 84
               

               
Conread position:
               
179-447
               

               
Cow position:
               
chr19:31396188-31396460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr19:23462918-23463204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr19:28370537-28370251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
174, 64
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr19:51971346-51971057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
196, 58
               

               
Conread position:
               
182-468
               

               
Cow position:
               
chr19:4379982-4379699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr19:48218345-48218625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
157, 54
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr19:30759552-30759272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr19:38983698-38983422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr19:55974832-55975125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr19:44489054-44488779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
104, 41
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr19:8206006-8206274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
201-465
               

               
Cow position:
               
chr19:6556630-6556364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
174, 61
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr19:2249472-2249739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 61
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr19:33625582-33625312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chr19:22513246-22512986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chr19:26803760-26804017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
227-471
               

               
Cow position:
               
chr19:43066800-43066553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 47
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chr19:30460682-30460437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
234-471
               

               
Cow position:
               
chr19:27638995-27639229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
257-791
               

               
Cow position:
               
chr19:35982715-35982156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
463-805
               

               
Cow position:
               
chr19:6556337-6555992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 13
               

               
Conread position:
               
581-804
               

               
Cow position:
               
chr19:30717495-30717263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr2:4740629-4740326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
176-462
               

               
Cow position:
               
chr2:35908504-35908217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
175, 23
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr2:63889768-63890057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
177-471
               

               
Cow position:
               
chr2:48748997-48749293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
178-463
               

               
Cow position:
               
chr2:81645485-81645772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
178-466
               

               
Cow position:
               
chr2:40313000-40312710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
197, 84
               

               
Conread position:
               
178-495
               

               
Cow position:
               
chr2:893989-894304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
175, 84
               

               
Conread position:
               
179-463
               

               
Cow position:
               
chr2:46256957-46256671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
179-463
               

               
Cow position:
               
chr2:55127498-55127789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr2:41184780-41184497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr2:40773403-40773111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
205, 92
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr2:25216957-25216661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr2:31910308-31910593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 82
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr2:39913250-39912955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr2:75364430-75364719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 91
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr2:79075979-79076273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
179-657
               

               
Cow position:
               
chr2:32244070-32244542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 93
               

               
Conread position:
               
179-683
               

               
Cow position:
               
chr2:26879119-26878592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
179-788
               

               
Cow position:
               
chr2:9408042-9407388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 96
               

               
Conread position:
               
180-471
               

               
Cow position:
               
chr2:30389098-30388804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
172, 82
               

               
Conread position:
               
180-473
               

               
Cow position:
               
chr2:41162718-41162429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
202, 94
               

               
Conread position:
               
181-468
               

               
Cow position:
               
chr2:31985675-31985378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
182-466
               

               
Cow position:
               
chr2:15693907-15693627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
169, 80
               

               
Conread position:
               
182-466
               

               
Cow position:
               
chr2:32454977-32455268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
182-804
               

               
Cow position:
               
chr2:85244010-85243377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
195-439
               

               
Cow position:
               
chr2:15061337-15061582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr2:3441002-3440724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
110, 59
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr2:32499176-32499454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr2:41725335-41725053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
197-466
               

               
Cow position:
               
chr2:60947444-60947173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
154, 65
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr2:43826436-43826171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr2:57339399-57339132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr2:52622232-52621964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
207-464
               

               
Cow position:
               
chr2:64505497-64505758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
207-468
               

               
Cow position:
               
chr2:24603103-24603361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
210-805
               

               
Cow position:
               
chr2:46207844-46208453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr2:43879311-43879073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
280-466
               

               
Cow position:
               
chr2:854133-853943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
326-805
               

               
Cow position:
               
chr2:71119766-71119272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
162-461
               

               
Cow position:
               
chr20:22695620-22695925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
174-467
               

               
Cow position:
               
chr20:35133719-35133417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
164, 88
               

               
Conread position:
               
177-453
               

               
Cow position:
               
chr20:12155348-12155623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr20:15746956-15746673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr20:6017310-6017598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
105, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr20:13766879-13766595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr20:23681516-23681805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
172, 97
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr20:10759731-10760017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
172, 82
               

               
Conread position:
               
179-619
               

               
Cow position:
               
chr20:10061960-10062409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 81
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr20:20360057-20360348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 80
               

               
Conread position:
               
188-471
               

               
Cow position:
               
chr20:2655235-2654950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 74
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr20:7527619-7527890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
152, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr20:14866407-14866682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr20:14926381-14926114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
149, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr20:20438059-20438326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
220-468
               

               
Cow position:
               
chr20:7933669-7933419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr21:446857-446545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr21:44254649-44254340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
176-800
               

               
Cow position:
               
chr21:29253101-29253746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 109
               

               
Conread position:
               
178-470
               

               
Cow position:
               
chr21:6619265-6619553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
197, 84
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr21:39641089-39640810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
219, 89
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr21:47823490-47823777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr21:39694130-39693845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr21:36956737-36956453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr21:20910334-20910612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr21:19050710-19050997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
207, 92
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr21:19436621-19436915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
180-471
               

               
Cow position:
               
chr21:44804484-44804765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
166, 91
               

               
Conread position:
               
195-439
               

               
Cow position:
               
chr21:23293394-23293634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr21:18289424-18289155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr21:44219996-44219717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr21:39486189-39486456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
153, 33
               

               
Conread position:
               
253-761
               

               
Cow position:
               
chr21:5418582-5418057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
254-471
               

               
Cow position:
               
chr21:23500303-23500514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
262-773
               

               
Cow position:
               
chr21:35742450-35742982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 350
               

               
Conread position:
               
263-468
               

               
Cow position:
               
chr21:22724298-22724506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
271-467
               

               
Cow position:
               
chr21:29664987-29665175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
294-471
               

               
Cow position:
               
chr21:13358268-13358089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
503-805
               

               
Cow position:
               
chr21:23548506-23548820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 192
               

               
Conread position:
               
176-804
               

               
Cow position:
               
chr22:13210316-13209653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
179-465
               

               
Cow position:
               
chr22:41407535-41407821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr22:7280695-7280401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
172, 74
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr22:22967938-22967653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
107, 49
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr22:30573418-30573708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
180, 38
               

               
Conread position:
               
179-472
               

               
Cow position:
               
chr22:24031267-24031552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
179-805
               

               
Cow position:
               
chr22:838748-839400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
187-468
               

               
Cow position:
               
chr22:33094263-33093985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
167, 75
               

               
Conread position:
               
195-467
               

               
Cow position:
               
chr22:41927662-41927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 68
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr22:21330752-21331024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr22:42605328-42605054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
191, 44
               

               
Conread position:
               
200-475
               

               
Cow position:
               
chr22:42933799-42934077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr22:23936637-23936371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
204-471
               

               
Cow position:
               
chr22:19016776-19017053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
217-471
               

               
Cow position:
               
chr22:33386722-33386977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
270-471
               

               
Cow position:
               
chr22:16104145-16103948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
280-471
               

               
Cow position:
               
chr22:43044648-43044841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 131
               

               
Conread position:
               
297-466
               

               
Cow position:
               
chr22:13610291-13610460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr23:19967352-19967052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 90
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr23:6698770-6698480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
195-465
               

               
Cow position:
               
chr23:8446251-8446518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr23:5416932-5416653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
130, 67
               

               
Conread position:
               
200-467
               

               
Cow position:
               
chr23:28366633-28366903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr23:15702811-15703076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
201-452
               

               
Cow position:
               
chr23:21659654-21659408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr23:7252843-7252580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
206-460
               

               
Cow position:
               
chr23:20724888-20724631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
257-445
               

               
Cow position:
               
chr23:7265571-7265760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr23:34468336-34468549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 5
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr24:17412441-17412146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr24:15935963-15935670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
175, 20
               

               
Conread position:
               
179-452
               

               
Cow position:
               
chr24:19782806-19782529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
179-463
               

               
Cow position:
               
chr24:34329341-34329055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr24:12293713-12293423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-565
               

               
Cow position:
               
chr24:15036759-15036374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 30
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr24:34493236-34493521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
190-471
               

               
Cow position:
               
chr24:33526698-33526989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
195-452
               

               
Cow position:
               
chr24:6341842-6341581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr24:36722404-36722136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
158, 67
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr24:10554325-10554059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr24:8021249-8020966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr24:17763591-17763876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr24:25229403-25229678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr24:25710040-25710308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr24:33639499-33639767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
278-471
               

               
Cow position:
               
chr24:6416089-6415893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 79
               

               
Conread position:
               
480-804
               

               
Cow position:
               
chr24:19675502-19675185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
176-461
               

               
Cow position:
               
chr25:9937808-9938100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr25:14625204-14625507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr25:26456429-26456127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 92
               

               
Conread position:
               
183-466
               

               
Cow position:
               
chr25:24302547-24302834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
155, 79
               

               
Conread position:
               
285-471
               

               
Cow position:
               
chr25:34445290-34445100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
474-799
               

               
Cow position:
               
chr25:9055056-9054729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 287
               

               
Conread position:
               
479-798
               

               
Cow position:
               
chr25:41097806-41098129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr26:9825133-9825447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr26:16906086-16905783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-475
               

               
Cow position:
               
chr26:9692581-9692875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr26:15631948-15631671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 67
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr26:11814997-11815264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr26:29434184-29433916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
207-466
               

               
Cow position:
               
chr26:2610123-2610384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
474-787
               

               
Cow position:
               
chr26:1621300-1620983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
128, 182
               

               
Conread position:
               
176-472
               

               
Cow position:
               
chr27:17438852-17439152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
179-463
               

               
Cow position:
               
chr27:6074159-6074438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr27:8973373-8973089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
174, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr27:9371743-9372032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr27:776953-777247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
168, 63
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr27:16550700-16550993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 47
               

               
Conread position:
               
179-473
               

               
Cow position:
               
chr27:25800283-25800574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
175, 85
               

               
Conread position:
               
179-495
               

               
Cow position:
               
chr27:3730071-3729748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 93
               

               
Conread position:
               
182-439
               

               
Cow position:
               
chr27:11403154-11403408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
187-447
               

               
Cow position:
               
chr27:1123269-1123524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
164, 28
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr27:14881129-14881383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
142, 67
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr27:22559337-22559605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
159, 74
               

               
Conread position:
               
195-470
               

               
Cow position:
               
chr27:25970767-25971037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr27:30572972-30572695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr27:17923824-17923547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr27:19146591-19146324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr27:15312462-15312730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 64
               

               
Conread position:
               
204-471
               

               
Cow position:
               
chr27:26945152-26945422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
147, 58
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr27:18559043-18559295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr28:15965608-15965909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 95
               

               
Conread position:
               
171-470
               

               
Cow position:
               
chr28:2661072-2661373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr28:4458594-4458304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
176-689
               

               
Cow position:
               
chr28:3462887-3462350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
176-719
               

               
Cow position:
               
chr28:22645231-22644679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
179-457
               

               
Cow position:
               
chr28:8855873-8855591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr28:24603898-24603615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr28:13935902-13935628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr28:19961608-19961312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr28:20310901-20310623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
159, 52
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr28:21569859-21569573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr28:15712962-15712695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr28:23309383-23309651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr28:34731684-34731416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
204-651
               

               
Cow position:
               
chr28:7723975-7724432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chr28:962287-962016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
245-440
               

               
Cow position:
               
chr28:10190334-10190531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
246-471
               

               
Cow position:
               
chr28:7345070-7344845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
261-471
               

               
Cow position:
               
chr28:9184545-9184756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
285-462
               

               
Cow position:
               
chr28:14554951-14554770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
177-731
               

               
Cow position:
               
chr29:21534968-21535554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr29:21615240-21614960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
167, 195
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr29:22339504-22339804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
187-787
               

               
Cow position:
               
chr29:29701275-29701899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr29:36209624-36209351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr29:27309756-27310030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
154, 65
               

               
Conread position:
               
201-487
               

               
Cow position:
               
chr29:13127420-13127696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
202-467
               

               
Cow position:
               
chr29:19428362-19428094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
151, 91
               

               
Conread position:
               
203-554
               

               
Cow position:
               
chr29:11972974-11972605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
253-471
               

               
Cow position:
               
chr29:34754917-34754699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
602-791
               

               
Cow position:
               
chr29:40040872-40041059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
158-464
               

               
Cow position:
               
chr3:27784842-27784536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
193, 25
               

               
Conread position:
               
167-452
               

               
Cow position:
               
chr3:61283206-61282923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
170-471
               

               
Cow position:
               
chr3:24531545-24531242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr3:1498567-1498278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
200, 52
               

               
Conread position:
               
175-480
               

               
Cow position:
               
chr3:74408052-74407749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr3:8235112-8234817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 274
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr3:40231626-40231330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
179-457
               

               
Cow position:
               
chr3:72530873-72530593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 80
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chr3:12255170-12254886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
216, 83
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr3:42595105-42595395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr3:1034946-1034657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr3:7245250-7245539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr3:15557651-15557352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
172, 70
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr3:26474847-26474553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr3:40687375-40687081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
179-755
               

               
Cow position:
               
chr3:13495441-13494838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 83
               

               
Conread position:
               
179-763
               

               
Cow position:
               
chr3:15746749-15747324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
179-764
               

               
Cow position:
               
chr3:72604040-72603451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 70
               

               
Conread position:
               
179-787
               

               
Cow position:
               
chr3:69962019-69962623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
188-471
               

               
Cow position:
               
chr3:66887343-66887623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 74
               

               
Conread position:
               
195-462
               

               
Cow position:
               
chr3:45342800-45342534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
195-465
               

               
Cow position:
               
chr3:40345074-40344799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
161, 67
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr3:51597758-51597484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr3:73936351-73936632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 39
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr3:78546425-78546699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
195-805
               

               
Cow position:
               
chr3:38497618-38496990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
196-441
               

               
Cow position:
               
chr3:39949252-39949490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 66
               

               
Conread position:
               
200-447
               

               
Cow position:
               
chr3:24887420-24887176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr3:36122012-36121746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr3:6754522-6754255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr3:18218886-18219165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr3:19797265-19797534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
202-466
               

               
Cow position:
               
chr3:41854754-41855015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr3:64656039-64655774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 60
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr3:43007756-43008027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
204-471
               

               
Cow position:
               
chr3:39840267-39840002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
213-470
               

               
Cow position:
               
chr3:18448921-18448657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chr3:945769-945535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
257-459
               

               
Cow position:
               
chr3:56099226-56099431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr3:33633262-33633475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chr3:50111277-50111486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
271-471
               

               
Cow position:
               
chr3:26750326-26750529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr3:22867207-22867405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 161
               

               
Conread position:
               
474-791
               

               
Cow position:
               
chr3:57590865-57590555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
475-803
               

               
Cow position:
               
chr3:23944496-23944169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 119
               

               
Conread position:
               
485-805
               

               
Cow position:
               
chr3:34556862-34557174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 60
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr4:21073461-21073759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
178-467
               

               
Cow position:
               
chr4:34340113-34340402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 84
               

               
Conread position:
               
179-464
               

               
Cow position:
               
chr4:58802254-58802536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
196, 96
               

               
Conread position:
               
179-465
               

               
Cow position:
               
chr4:47087379-47087668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
174, 96
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr4:7329041-7329327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr4:11640912-11641201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr4:22023436-22023728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
196, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr4:27548526-27548822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
151, 83
               

               
Conread position:
               
179-568
               

               
Cow position:
               
chr4:15283069-15282679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 84
               

               
Conread position:
               
182-468
               

               
Cow position:
               
chr4:58833504-58833793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 80
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr4:44645519-44645811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
169, 80
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chr4:59118456-59118740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
190-787
               

               
Cow position:
               
chr4:36755418-36754814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 84
               

               
Conread position:
               
195-464
               

               
Cow position:
               
chr4:38309445-38309714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr4:8558675-8558935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
191, 76
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr4:14142962-14142694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
180, 76
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr4:10578808-10578530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr4:28151221-28150943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr4:30960211-30959937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
190, 67
               

               
Conread position:
               
198-471
               

               
Cow position:
               
chr4:21162380-21162105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr4:1926992-1927260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
202-462
               

               
Cow position:
               
chr4:61128578-61128837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
203-467
               

               
Cow position:
               
chr4:42922543-42922808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
203-603
               

               
Cow position:
               
chr4:6443395-6443802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 59
               

               
Conread position:
               
207-468
               

               
Cow position:
               
chr4:66533212-66532951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
214-466
               

               
Cow position:
               
chr4:5979118-5979370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
160, 50
               

               
Conread position:
               
217-462
               

               
Cow position:
               
chr4:65525646-65525888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chr4:27463028-27462784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 46
               

               
Conread position:
               
240-472
               

               
Cow position:
               
chr4:65208322-65208557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr4:25735111-25734898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 202
               

               
Conread position:
               
265-718
               

               
Cow position:
               
chr4:67517495-67517975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 9
               

               
Conread position:
               
276-446
               

               
Cow position:
               
chr4:53532073-53531897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
474-805
               

               
Cow position:
               
chr4:42638964-42639290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 23
               

               
Conread position:
               
167-469
               

               
Cow position:
               
chr5:5812325-5812632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
176-472
               

               
Cow position:
               
chr5:57949527-57949826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 86
               

               
Conread position:
               
179-791
               

               
Cow position:
               
chr5:11955751-11956374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 20
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr5:6901006-6901298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
165, 80
               

               
Conread position:
               
183-471
               

               
Cow position:
               
chr5:23683350-23683637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
188-471
               

               
Cow position:
               
chr5:44276350-44276070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
165, 74
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr5:51952080-51951800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
191, 240
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr5:54556928-54556649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
195-651
               

               
Cow position:
               
chr5:23179786-23179330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 40
               

               
Conread position:
               
196-441
               

               
Cow position:
               
chr5:15088911-15088665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
200-467
               

               
Cow position:
               
chr5:68377334-68377070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr5:11631242-11631510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr5:62427983-62427715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr5:37047653-37047379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
215-468
               

               
Cow position:
               
chr5:35262178-35261923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
241-451
               

               
Cow position:
               
chr5:50900529-50900318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
249-471
               

               
Cow position:
               
chr5:55986335-55986111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
285-467
               

               
Cow position:
               
chr5:48238806-48238996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
286-470
               

               
Cow position:
               
chr5:65817033-65817223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
175-814
               

               
Cow position:
               
chr6:15182040-15181388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr6:2088414-2088128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr6:10426184-10425883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr6:52556718-52557009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
191-471
               

               
Cow position:
               
chr6:31978848-31979123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chr6:30892782-30893052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr6:51191526-51191241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
195-794
               

               
Cow position:
               
chr6:50527396-50526760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr6:31688644-31688922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr6:33949265-33949550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
57, 126
               

               
Conread position:
               
197-439
               

               
Cow position:
               
chr6:55041163-55040924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 65
               

               
Conread position:
               
197-467
               

               
Cow position:
               
chr6:55944551-55944825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
197-471
               

               
Cow position:
               
chr6:27870495-27870226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 43
               

               
Conread position:
               
200-468
               

               
Cow position:
               
chr6:51733963-51733698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr6:54433279-54433551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr6:57680650-57680897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
203-471
               

               
Cow position:
               
chr6:19328105-19328374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
221-467
               

               
Cow position:
               
chr6:15481424-15481179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
257-464
               

               
Cow position:
               
chr6:10422824-10422615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
257-467
               

               
Cow position:
               
chr6:39916650-39916438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
260-471
               

               
Cow position:
               
chr6:46813960-46813753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr6:40137578-40137791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
286-788
               

               
Cow position:
               
chr6:57474049-57473527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 276
               

               
Conread position:
               
474-805
               

               
Cow position:
               
chr6:10236765-10236436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
167-466
               

               
Cow position:
               
chr7:40318711-40318411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
168-468
               

               
Cow position:
               
chr7:40262356-40262661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
175-472
               

               
Cow position:
               
chr7:44443013-44443307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
175-608
               

               
Cow position:
               
chr7:14575368-14574927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 87
               

               
Conread position:
               
175-648
               

               
Cow position:
               
chr7:37024570-37024079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr7:32265632-32265339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
175, 18
               

               
Conread position:
               
177-505
               

               
Cow position:
               
chr7:53986223-53986556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
178-471
               

               
Cow position:
               
chr7:43872963-43872662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
179-452
               

               
Cow position:
               
chr7:39512979-39513252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
196, 54
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr7:4132902-4132608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
179-466
               

               
Cow position:
               
chr7:42494791-42495080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr7:20576510-20576222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr7:24061415-24061123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr7:54699800-54699508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
93, 82
               

               
Conread position:
               
179-789
               

               
Cow position:
               
chr7:34245284-34244645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 20
               

               
Conread position:
               
182-610
               

               
Cow position:
               
chr7:60574780-60574334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
192-471
               

               
Cow position:
               
chr7:19604533-19604816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
195-467
               

               
Cow position:
               
chr7:5486051-5486326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 59
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr7:23257112-23257391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
200-470
               

               
Cow position:
               
chr7:27455845-27456110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr7:37166817-37166549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr7:52752163-52752432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr7:61444103-61443832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chr7:34548563-34548296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 61
               

               
Conread position:
               
204-468
               

               
Cow position:
               
chr7:10902147-10902408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
147, 70
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr7:57184652-57184908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
245-471
               

               
Cow position:
               
chr7:45907237-45907009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
257-471
               

               
Cow position:
               
chr7:33063007-33063224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
264-465
               

               
Cow position:
               
chr7:10445699-10445905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 113
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr7:32286086-32285885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
278-471
               

               
Cow position:
               
chr7:24851358-24851554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
136-471
               

               
Cow position:
               
chr8:39986401-39986735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
164-774
               

               
Cow position:
               
chr8:16757664-16758291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
172-467
               

               
Cow position:
               
chr8:21732308-21732005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr8:37133047-37132747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 88
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr8:48685516-48685817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
176-463
               

               
Cow position:
               
chr8:12094527-12094237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
176-464
               

               
Cow position:
               
chr8:5041410-5041125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
184, 17
               

               
Conread position:
               
179-461
               

               
Cow position:
               
chr8:19616297-19616013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
179-462
               

               
Cow position:
               
chr8:11478062-11477779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chr8:47469708-47469421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
168, 83
               

               
Conread position:
               
179-778
               

               
Cow position:
               
chr8:8481197-8481832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
171, 82
               

               
Conread position:
               
184-471
               

               
Cow position:
               
chr8:19362358-19362070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr8:18485859-18485580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
195-468
               

               
Cow position:
               
chr8:21078245-21077975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr8:72858-73132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr8:47065441-47065713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr8:47484221-47484502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chr8:47868525-47868805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 69
               

               
Conread position:
               
197-468
               

               
Cow position:
               
chr8:18289438-18289714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
200-463
               

               
Cow position:
               
chr8:29416635-29416898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
186, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr8:1111614-1111347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr8:22492209-22492477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr8:38049132-38048864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr8:55190164-55189896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr8:60769245-60769513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
202-668
               

               
Cow position:
               
chr8:33050164-33049664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
203-495
               

               
Cow position:
               
chr8:1385994-1385702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
186, 59
               

               
Conread position:
               
206-471
               

               
Cow position:
               
chr8:27368794-27368527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
247-764
               

               
Cow position:
               
chr8:31954324-31953802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 187
               

               
Conread position:
               
255-467
               

               
Cow position:
               
chr8:51451744-51451948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
276-468
               

               
Cow position:
               
chr8:51696404-51696600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
302-471
               

               
Cow position:
               
chr8:24889864-24889694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
325-773
               

               
Cow position:
               
chr8:1158351-1158821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 228
               

               
Conread position:
               
474-791
               

               
Cow position:
               
chr8:44524684-44524999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr9:3722569-3722267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chr9:23438519-23438233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
175, 27
               

               
Conread position:
               
179-427
               

               
Cow position:
               
chr9:32396264-32396512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr9:31341721-31342011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr9:51318074-51318374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chr9:53531529-53531233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
179-764
               

               
Cow position:
               
chr9:34553420-34554021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 78
               

               
Conread position:
               
179-790
               

               
Cow position:
               
chr9:8162831-8163458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 91
               

               
Conread position:
               
180-466
               

               
Cow position:
               
chr9:59529999-59529713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
182-791
               

               
Cow position:
               
chr9:5607979-5608574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
188-463
               

               
Cow position:
               
chr9:19567972-19568249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 81
               

               
Conread position:
               
195-465
               

               
Cow position:
               
chr9:3932297-3932563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
151, 89
               

               
Conread position:
               
195-467
               

               
Cow position:
               
chr9:49301507-49301779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 76
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr9:9957374-9957649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr9:33669054-33669330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
196-788
               

               
Cow position:
               
chr9:52038170-52037546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
198-804
               

               
Cow position:
               
chr9:64025024-64025660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
200-466
               

               
Cow position:
               
chr9:8908761-8909025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chr9:25239717-25239984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-755
               

               
Cow position:
               
chr9:10665703-10665130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 62
               

               
Conread position:
               
200-766
               

               
Cow position:
               
chr9:47836591-47835978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
221-590
               

               
Cow position:
               
chr9:15987808-15987440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
154, 12
               

               
Conread position:
               
245-803
               

               
Cow position:
               
chr9:26124448-26123885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
286-471
               

               
Cow position:
               
chr9:42901717-42901906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
289-462
               

               
Cow position:
               
chr9:41054572-41054395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 147
               

               
Conread position:
               
522-789
               

               
Cow position:
               
chr9:27004936-27004663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
617-800
               

               
Cow position:
               
chr9:38691745-38691561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
97-791
               

               
Cow position:
               
chrX:6043655-6044360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
127-471
               

               
Cow position:
               
chrX:18989258-18988912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 135
               

               
Conread position:
               
175-466
               

               
Cow position:
               
chrX:8542220-8541922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 92
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chrX:20734392-20734096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 86
               

               
Conread position:
               
179-453
               

               
Cow position:
               
chrX:16733006-16733281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
207, 67
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chrX:3396029-3396319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
167, 75
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chrX:8518815-8518527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
179-467
               

               
Cow position:
               
chrX:33631900-33631609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
167, 28
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chrX:11674798-11674510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
173, 78
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chrX:14908756-14908465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
172, 41
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chrX:17265306-17265593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 83
               

               
Conread position:
               
179-468
               

               
Cow position:
               
chrX:20654320-20654024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:3808146-3807854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:4409312-4409010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:12724509-12724218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:13058304-13058009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 84
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:13889576-13889287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:17200543-17200238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:18656065-18656354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
174, 98
               

               
Conread position:
               
179-471
               

               
Cow position:
               
chrX:37067014-37066723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
179-570
               

               
Cow position:
               
chrX:42530744-42531157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
184, 95
               

               
Conread position:
               
180-441
               

               
Cow position:
               
chrX:40788899-40788628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 120
               

               
Conread position:
               
180-471
               

               
Cow position:
               
chrX:37955642-37955352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
169, 82
               

               
Conread position:
               
182-468
               

               
Cow position:
               
chrX:5648658-5648932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
164, 80
               

               
Conread position:
               
190-468
               

               
Cow position:
               
chrX:25281756-25282036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
195-445
               

               
Cow position:
               
chrX:45200164-45200415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
195-452
               

               
Cow position:
               
chrX:20504488-20504232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 12
               

               
Conread position:
               
195-466
               

               
Cow position:
               
chrX:41192414-41192145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chrX:7806102-7805827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chrX:13404621-13404901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chrX:23414658-23414937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
195-471
               

               
Cow position:
               
chrX:25404634-25404905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
196-467
               

               
Cow position:
               
chrX:21815892-21815621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
197-468
               

               
Cow position:
               
chrX:26749151-26749425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 65
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chrX:17783218-17782950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
200-471
               

               
Cow position:
               
chrX:27594461-27594729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
201-463
               

               
Cow position:
               
chrX:3582915-3582651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 61
               

               
Conread position:
               
201-464
               

               
Cow position:
               
chrX:24006104-24006366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
197, 71
               

               
Conread position:
               
201-471
               

               
Cow position:
               
chrX:13405579-13405846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
207-471
               

               
Cow position:
               
chrX:38140320-38140589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
151, 55
               

               
Conread position:
               
213-471
               

               
Cow position:
               
chrX:9911065-9911323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
234-471
               

               
Cow position:
               
chrX:12823691-12823451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
240-466
               

               
Cow position:
               
chrX:6642384-6642147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chrX:26508924-26508688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
261-805
               

               
Cow position:
               
chrX:22125201-22125778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 270
               

               
Conread position:
               
262-446
               

               
Cow position:
               
chrX:30429684-30429872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
286-468
               

               
Cow position:
               
chrX:12094945-12095131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
296-462
               

               
Cow position:
               
chrX:22139613-22139784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
311-791
               

               
Cow position:
               
chrX:39463452-39463955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
478-798
               

               
Cow position:
               
chrX:36840118-36839797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 21