Cow genome map

Conread name: Pig4-TMW8030N23

Conread position: 1-125
Cow position: chr1:44986692-44986562 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-128
Cow position: chr1:47233315-47233442 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-131
Cow position: chr1:45478699-45478830 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr1:3882298-3882430 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr1:50992095-50991968 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 21

Conread position: 2-129
Cow position: chr1:81580338-81580213 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr1:49299823-49299693 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr1:52995189-52995055 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 2-133
Cow position: chr1:53640873-53640746 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 2-135
Cow position: chr1:44269249-44269120 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 72, 19

Conread position: 3-127
Cow position: chr1:86383646-86383769 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 4-135
Cow position: chr1:89341821-89341951 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 6-135
Cow position: chr1:97750462-97750590 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 7-122
Cow position: chr1:71253400-71253514 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-125
Cow position: chr1:72069957-72070075 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 13-129
Cow position: chr1:72356505-72356391 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 20-112
Cow position: chr1:44814526-44814617 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 20-127
Cow position: chr1:95072476-95072369 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 21-129
Cow position: chr1:29671081-29671189 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-129
Cow position: chr1:7023263-7023156 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr1:28985425-28985535 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 24-129
Cow position: chr1:45315496-45315601 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 24-135
Cow position: chr1:88913459-88913349 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 25-131
Cow position: chr1:99221217-99221322 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 27-135
Cow position: chr1:42775047-42774939 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 25, 8

Conread position: 29-128
Cow position: chr1:89388479-89388380 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr1:46354304-46354404 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr1:90621370-90621471 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 30-129
Cow position: chr1:51628845-51628944 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 31-122
Cow position: chr1:43388919-43389010 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr1:76657934-76658036 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-134
Cow position: chr1:81481249-81481352 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 34-133
Cow position: chr1:43499167-43499265 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 34-133
Cow position: chr1:61011311-61011212 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 34-135
Cow position: chr1:52662044-52662144 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 36-129
Cow position: chr1:78838923-78838830 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr1:5597086-5597183 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 39-135
Cow position: chr1:87197945-87197849 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr1:84288526-84288438 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr1:100746725-100746822 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 41-136
Cow position: chr1:55110615-55110522 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 1-135
Cow position: chr10:41760187-41760321 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 125

Conread position: 1-143
Cow position: chr10:15115751-15115606 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 138

Conread position: 2-126
Cow position: chr10:31265920-31266046 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 2-129
Cow position: chr10:77501-77378 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-131
Cow position: chr10:24732436-24732307 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 19

Conread position: 2-131
Cow position: chr10:52113540-52113670 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr10:26209116-26209246 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr10:40563516-40563384 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 19

Conread position: 2-133
Cow position: chr10:57457762-57457629 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 2-136
Cow position: chr10:24902853-24902986 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 3-132
Cow position: chr10:56180693-56180566 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 3-135
Cow position: chr10:55119754-55119886 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 18

Conread position: 6-128
Cow position: chr10:49455963-49456086 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 62

Conread position: 7-129
Cow position: chr10:37426006-37426128 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-133
Cow position: chr10:60961062-60960936 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 9-129
Cow position: chr10:24763609-24763489 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 12

Conread position: 10-135
Cow position: chr10:2000848-2000980 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 13-129
Cow position: chr10:17150002-17149885 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 20-133
Cow position: chr10:704880-704994 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 23-129
Cow position: chr10:4151650-4151544 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 23-135
Cow position: chr10:49947770-49947881 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 23-135
Cow position: chr10:55600046-55600157 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 25-129
Cow position: chr10:58044019-58044123 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-135
Cow position: chr10:28776460-28776350 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 98
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 27-113
Cow position: chr10:8891182-8891268 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-131
Cow position: chr10:54848883-54848781 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr10:53405578-53405472 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr10:37415893-37415795 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr10:39228251-39228147 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr10:24971226-24971321 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 37-129
Cow position: chr10:37818460-37818551 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 39-129
Cow position: chr10:10148744-10148654 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr10:11047109-11047199 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr10:34661230-34661318 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 39-129
Cow position: chr10:52278820-52278729 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 39-135
Cow position: chr10:2857142-2857047 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 39-135
Cow position: chr10:53674921-53674825 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr10:19679191-19679103 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr10:22633532-22633626 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 42-129
Cow position: chr10:37768395-37768310 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 44-129
Cow position: chr10:37529175-37529260 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 46-144
Cow position: chr10:31362125-31362222 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 1-129
Cow position: chr11:69293515-69293643 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 21

Conread position: 1-135
Cow position: chr11:20761983-20761853 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 104

Conread position: 2-129
Cow position: chr11:69076047-69075922 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr11:32782750-32782876 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 2-133
Cow position: chr11:58173762-58173633 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr11:59916285-59916154 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 19

Conread position: 2-133
Cow position: chr11:79018921-79019051 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr11:26845457-26845588 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr11:28644227-28644093 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 2-136
Cow position: chr11:62778581-62778446 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 114

Conread position: 3-135
Cow position: chr11:10363250-10363380 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 3-136
Cow position: chr11:22747193-22747326 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 27

Conread position: 4-128
Cow position: chr11:3234213-3234088 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 4-131
Cow position: chr11:40573197-40573325 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 107

Conread position: 6-124
Cow position: chr11:45437412-45437295 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 6-135
Cow position: chr11:62226123-62225992 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 15

Conread position: 6-135
Cow position: chr11:66424744-66424873 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 75

Conread position: 7-122
Cow position: chr11:52415568-52415451 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 7-135
Cow position: chr11:44032145-44032017 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-129
Cow position: chr11:44234489-44234367 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 8-133
Cow position: chr11:377509-377634 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 13

Conread position: 12-144
Cow position: chr11:55714570-55714439 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 15-129
Cow position: chr11:261141-261256 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 17-133
Cow position: chr11:46452259-46452143 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr11:41980084-41980193 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-135
Cow position: chr11:2900600-2900715 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-135
Cow position: chr11:5201532-5201646 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 98
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 20-135
Cow position: chr11:28168302-28168417 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-127
Cow position: chr11:31326126-31326020 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-129
Cow position: chr11:34646709-34646601 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-131
Cow position: chr11:37042090-37041981 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 23-135
Cow position: chr11:8437573-8437688 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 27-129
Cow position: chr11:48315283-48315385 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr11:11523343-11523452 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 18

Conread position: 28-122
Cow position: chr11:44222997-44222904 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 29-130
Cow position: chr11:434763-434863 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 29-130
Cow position: chr11:23407576-23407475 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr11:17676261-17676367 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr11:31410766-31410872 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr11:46922773-46922880 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 31-130
Cow position: chr11:4411759-4411858 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr11:31228072-31227970 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr11:83230291-83230393 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr11:30192289-30192184 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 32-133
Cow position: chr11:51729395-51729294 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr11:20205744-20205846 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-136
Cow position: chr11:58228721-58228620 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr11:62620478-62620388 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr11:77319516-77319420 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-136
Cow position: chr11:62812848-62812945 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr11:41293718-41293812 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr11:44636655-44636748 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 41-135
Cow position: chr11:52297121-52297215 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-135
Cow position: chr11:25320284-25320191 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 47-135
Cow position: chr11:33409168-33409256 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-135
Cow position: chr12:33319548-33319683 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 43, 20

Conread position: 2-133
Cow position: chr12:27572123-27572253 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 3-134
Cow position: chr12:32715164-32715031 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 115

Conread position: 7-137
Cow position: chr12:18020973-18020841 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 113

Conread position: 12-135
Cow position: chr12:27037341-27037465 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 13-129
Cow position: chr12:4014327-4014442 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 23-129
Cow position: chr12:22485903-22485797 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr12:25814250-25814140 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-133
Cow position: chr12:6410639-6410748 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 25-135
Cow position: chr12:45092541-45092431 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chr12:15260855-15260748 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 27-128
Cow position: chr12:33851450-33851349 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 28-129
Cow position: chr12:17252107-17252208 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr12:25528469-25528569 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr12:14986839-14986734 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 29-135
Cow position: chr12:18518764-18518658 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr12:29731403-29731305 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr12:7902711-7902814 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 31-135
Cow position: chr12:18123758-18123654 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-143
Cow position: chr12:33948993-33948882 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 35-135
Cow position: chr12:48578927-48578828 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 39-135
Cow position: chr12:7884600-7884696 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-143
Cow position: chr12:15122407-15122302 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 41-129
Cow position: chr12:37514203-37514290 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 42-133
Cow position: chr12:30194779-30194688 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 43-130
Cow position: chr12:30210560-30210473 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 79
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr13:5082480-5082606 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 1-129
Cow position: chr13:18172165-18172292 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 2-129
Cow position: chr13:20679169-20679295 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr13:20706376-20706249 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 2-133
Cow position: chr13:32363350-32363220 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr13:40634692-40634827 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-138
Cow position: chr13:50768250-50768386 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 19

Conread position: 3-129
Cow position: chr13:6087061-6086937 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 3-130
Cow position: chr13:19467506-19467381 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 3-131
Cow position: chr13:8609717-8609587 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 18

Conread position: 3-133
Cow position: chr13:20531643-20531514 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 3-133
Cow position: chr13:37640421-37640549 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 4-109
Cow position: chr13:56155321-56155215 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 92
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 6-126
Cow position: chr13:26365739-26365858 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 7-103
Cow position: chr13:20684296-20684198 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 14

Conread position: 7-122
Cow position: chr13:52881031-52880916 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 45

Conread position: 7-133
Cow position: chr13:17563573-17563699 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 61

Conread position: 7-135
Cow position: chr13:37621522-37621398 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 9-129
Cow position: chr13:18701205-18701328 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 10-128
Cow position: chr13:5992692-5992810 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 19-133
Cow position: chr13:9981993-9981880 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 20-129
Cow position: chr13:23856058-23856167 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr13:23960955-23960846 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-133
Cow position: chr13:56148368-56148481 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-133
Cow position: chr13:56160599-56160486 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-129
Cow position: chr13:11103352-11103243 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 21-135
Cow position: chr13:28652589-28652703 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-135
Cow position: chr13:33854835-33854722 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 22-143
Cow position: chr13:53850673-53850793 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 23-126
Cow position: chr13:53619854-53619957 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 24-130
Cow position: chr13:1037490-1037596 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-129
Cow position: chr13:21171720-21171616 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 91
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr13:23478884-23478986 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr13:19278948-19279057 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 27-135
Cow position: chr13:43525380-43525273 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 29-127
Cow position: chr13:23399622-23399720 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr13:21188224-21188324 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr13:41806628-41806734 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr13:16790069-16790165 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 35-129
Cow position: chr13:20826862-20826767 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 35-135
Cow position: chr13:19320392-19320494 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 37-128
Cow position: chr13:17619756-17619847 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 37-128
Cow position: chr13:37803755-37803847 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 39-129
Cow position: chr13:972031-971942 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 40-134
Cow position: chr13:14644918-14645013 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 42-133
Cow position: chr13:24230083-24230174 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 45-129
Cow position: chr13:20784462-20784546 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr14:29239040-29239167 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 20

Conread position: 1-142
Cow position: chr14:4990888-4991027 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 3-122
Cow position: chr14:34096677-34096558 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 94, 18

Conread position: 7-128
Cow position: chr14:33758260-33758382 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 113, 0

Conread position: 15-124
Cow position: chr14:50175301-50175191 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 20-125
Cow position: chr14:47224461-47224356 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr14:27848089-27848198 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 20-135
Cow position: chr14:25225632-25225747 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 24-135
Cow position: chr14:28706953-28707066 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 25-126
Cow position: chr14:38747587-38747689 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 27-128
Cow position: chr14:36151236-36151337 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr14:15055080-15054972 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-122
Cow position: chr14:48426984-48427080 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 29-126
Cow position: chr14:15228453-15228550 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-130
Cow position: chr14:4203185-4203084 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr14:13845899-13846004 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 29-135
Cow position: chr14:20736524-20736630 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr14:16457437-16457538 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 37-129
Cow position: chr14:25903452-25903544 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 82
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr14:10078192-10078287 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 1-94
Cow position: chr15:22749659-22749752 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 88

Conread position: 1-127
Cow position: chr15:15232758-15232631 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 1-135
Cow position: chr15:10335691-10335821 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr15:10723193-10723058 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 2-128
Cow position: chr15:1984228-1984355 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 2-131
Cow position: chr15:35441144-35441016 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr15:6530914-6530784 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr15:14261323-14261193 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr15:33976761-33976631 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr15:42789215-42789082 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-133
Cow position: chr15:28788147-28788280 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 4-135
Cow position: chr15:40594573-40594439 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 6-133
Cow position: chr15:23719545-23719419 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 9-133
Cow position: chr15:5657773-5657898 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 10-131
Cow position: chr15:36714074-36713951 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 11, 110

Conread position: 19-133
Cow position: chr15:29793243-29793129 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-129
Cow position: chr15:50332934-50333040 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 25-122
Cow position: chr15:13395507-13395603 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 25-133
Cow position: chr15:29330962-29331070 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 25-134
Cow position: chr15:34223822-34223931 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-125
Cow position: chr15:848600-848699 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chr15:26442170-26442281 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 27-129
Cow position: chr15:244738-244841 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 27-131
Cow position: chr15:26912114-26912010 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-133
Cow position: chr15:21821966-21821860 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr15:14576288-14576394 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-122
Cow position: chr15:25650446-25650357 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 80
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 38-135
Cow position: chr15:16908402-16908499 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-136
Cow position: chr15:20566885-20566979 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 40-135
Cow position: chr15:24982208-24982113 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr15:26158624-26158532 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-136
Cow position: chr15:28099085-28099179 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr16:30717159-30717031 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 14, 28

Conread position: 1-133
Cow position: chr16:44713321-44713454 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 99

Conread position: 2-119
Cow position: chr16:40700581-40700696 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr16:3114695-3114569 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr16:12501004-12501134 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 11

Conread position: 2-133
Cow position: chr16:33530565-33530435 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 4-133
Cow position: chr16:24826229-24826099 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 6-103
Cow position: chr16:51239079-51239173 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 6-129
Cow position: chr16:29608661-29608539 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 6-129
Cow position: chr16:41696944-41697062 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 7-129
Cow position: chr16:37669587-37669707 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 7-133
Cow position: chr16:20265412-20265537 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 9-123
Cow position: chr16:20914664-20914777 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 12

Conread position: 9-133
Cow position: chr16:8933279-8933401 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 12-124
Cow position: chr16:3304169-3304058 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 12-133
Cow position: chr16:8438504-8438626 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 12-133
Cow position: chr16:11390139-11390259 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 20-133
Cow position: chr16:44954359-44954245 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 96

Conread position: 21-113
Cow position: chr16:34753822-34753914 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr16:30897863-30897973 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 25-133
Cow position: chr16:7550100-7549994 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 27-125
Cow position: chr16:5396685-5396783 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-128
Cow position: chr16:27728392-27728291 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr16:33646146-33646045 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 30-125
Cow position: chr16:47820698-47820601 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 30-135
Cow position: chr16:7136216-7136321 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-128
Cow position: chr16:13689794-13689697 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr16:31484533-31484631 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 31

Conread position: 31-129
Cow position: chr16:33704934-33704835 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 33-135
Cow position: chr16:40562357-40562256 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 35-135
Cow position: chr16:12324579-12324479 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-129
Cow position: chr16:31078969-31079061 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-129
Cow position: chr16:48340572-48340664 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-166
Cow position: chr16:33629546-33629418 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 105

Conread position: 39-129
Cow position: chr16:21593971-21594061 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 40-134
Cow position: chr16:25839739-25839645 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr16:45785855-45785763 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr16:9836656-9836751 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 41-135
Cow position: chr16:45122153-45122059 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-126
Cow position: chr17:16195796-16195670 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 1-140
Cow position: chr17:29157615-29157474 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 2-126
Cow position: chr17:10510276-10510399 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-128
Cow position: chr17:6082706-6082581 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 50

Conread position: 2-129
Cow position: chr17:5743095-5743221 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr17:21206307-21206433 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 113
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr17:3067661-3067793 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr17:4472338-4472468 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 43

Conread position: 2-133
Cow position: chr17:9117838-9117710 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr17:21268494-21268363 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 86, 19

Conread position: 2-135
Cow position: chr17:15340556-15340688 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 3-122
Cow position: chr17:4286236-4286120 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 6-135
Cow position: chr17:9713150-9713278 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 20-135
Cow position: chr17:4121552-4121666 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 21-135
Cow position: chr17:4105816-4105930 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 22-135
Cow position: chr17:32989653-32989540 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 22-135
Cow position: chr17:32993447-32993560 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 23-129
Cow position: chr17:17059599-17059493 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-135
Cow position: chr17:32332918-32333027 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 25-198
Cow position: chr17:26183518-26183347 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 27-128
Cow position: chr17:17035121-17035020 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-130
Cow position: chr17:19544061-19544163 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 80, 18

Conread position: 27-135
Cow position: chr17:18934431-18934324 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 27-135
Cow position: chr17:25348540-25348432 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr17:25473110-25473210 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr17:30737613-30737513 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr17:946527-946421 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr17:35043755-35043860 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 31-122
Cow position: chr17:40331932-40331841 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr17:24587792-24587694 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 32-135
Cow position: chr17:21039724-21039621 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr17:17044171-17044268 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 39-135
Cow position: chr17:21114794-21114890 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr17:31037217-31037313 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr17:32138265-32138360 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 40-126
Cow position: chr17:32418957-32419043 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 75
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 40-129
Cow position: chr17:24895232-24895143 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 40-135
Cow position: chr17:1634333-1634428 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-119
Cow position: chr18:37810210-37810327 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 104
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 1-122
Cow position: chr18:36230604-36230723 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 1-133
Cow position: chr18:16997379-16997246 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 2-129
Cow position: chr18:9177017-9176895 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr18:56184057-56183931 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 2-133
Cow position: chr18:48828653-48828784 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 87, 19

Conread position: 2-135
Cow position: chr18:49324316-49324443 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 3-128
Cow position: chr18:28923728-28923850 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 3-135
Cow position: chr18:53038949-53038820 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 74, 18

Conread position: 7-135
Cow position: chr18:4534906-4535034 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 116, 14

Conread position: 9-133
Cow position: chr18:4757457-4757578 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 10-122
Cow position: chr18:2765365-2765252 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 14-122
Cow position: chr18:45637303-45637412 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 92

Conread position: 16-129
Cow position: chr18:48713660-48713547 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr18:4489803-4489912 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-128
Cow position: chr18:33896312-33896421 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 21-128
Cow position: chr18:42978541-42978648 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 24-135
Cow position: chr18:28657810-28657921 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 28-135
Cow position: chr18:49602946-49603053 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr18:2773296-2773396 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr18:35535050-35535150 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr18:38937917-38937817 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr18:25598136-25598242 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 31-128
Cow position: chr18:15613765-15613863 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 31-135
Cow position: chr18:49038556-49038452 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-126
Cow position: chr18:44205992-44206085 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr18:871753-871654 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 33-135
Cow position: chr18:1571145-1571247 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 36-135
Cow position: chr18:1954500-1954599 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr18:49197505-49197409 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr18:17660476-17660564 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr18:18844100-18844013 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 41-129
Cow position: chr18:21143878-21143968 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 43-133
Cow position: chr18:45558230-45558139 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 1-107
Cow position: chr19:25807160-25807267 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-125
Cow position: chr19:52735254-52735130 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 50

Conread position: 1-133
Cow position: chr19:55724256-55724389 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 2-131
Cow position: chr19:25652615-25652744 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 19

Conread position: 3-129
Cow position: chr19:25035622-25035497 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 6-135
Cow position: chr19:25853717-25853586 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 7-128
Cow position: chr19:20331698-20331817 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 8-133
Cow position: chr19:31998133-31998259 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 8-135
Cow position: chr19:4587600-4587726 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 19-129
Cow position: chr19:26269106-26269216 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 20-109
Cow position: chr19:47558706-47558617 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 79
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-131
Cow position: chr19:39585985-39586094 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 22-133
Cow position: chr19:31846426-31846536 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 23-125
Cow position: chr19:4486026-4486128 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-127
Cow position: chr19:27968574-27968676 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-127
Cow position: chr19:10238858-10238757 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-127
Cow position: chr19:22414146-22414246 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-197
Cow position: chr19:18051043-18051220 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 109, 87

Conread position: 29-126
Cow position: chr19:43413900-43413804 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 29-128
Cow position: chr19:18054138-18054237 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr19:14823374-14823274 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr19:38732257-38732157 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-133
Cow position: chr19:24637348-24637244 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr19:28810198-28810305 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 29-135
Cow position: chr19:33913645-33913539 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr19:33988188-33988082 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 76

Conread position: 37-129
Cow position: chr19:18786212-18786304 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr19:23088092-23088002 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr19:34757894-34757990 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr19:11414889-11414800 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 41-133
Cow position: chr19:1664084-1664176 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr19:43373145-43373053 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr19:17796002-17795908 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-134
Cow position: chr2:52409137-52409272 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 20

Conread position: 1-145
Cow position: chr2:68487849-68487991 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 2-113
Cow position: chr2:11659018-11659131 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 98
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr2:74260612-74260488 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-130
Cow position: chr2:19030982-19031110 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-133
Cow position: chr2:46909278-46909410 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-134
Cow position: chr2:9369765-9369901 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 19

Conread position: 3-133
Cow position: chr2:7383534-7383662 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 3-133
Cow position: chr2:13271264-13271393 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 6-125
Cow position: chr2:44191631-44191514 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 6-135
Cow position: chr2:1638756-1638628 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 15

Conread position: 7-135
Cow position: chr2:24434129-24434256 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 8-135
Cow position: chr2:29283060-29282932 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 19-133
Cow position: chr2:40431661-40431775 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-102
Cow position: chr2:33520809-33520890 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 75
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-107
Cow position: chr2:39351831-39351746 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 80
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 21-126
Cow position: chr2:72042967-72042861 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 24

Conread position: 21-135
Cow position: chr2:13695105-13695217 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 21-137
Cow position: chr2:47443399-47443282 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 109, 0

Conread position: 22-130
Cow position: chr2:13645455-13645349 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 22-135
Cow position: chr2:54971315-54971203 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 23-97
Cow position: chr2:61405936-61406010 (view UCSC Genome Browser custom track)
Alignm length: 75
Alignm identity: 69
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-129
Cow position: chr2:38949985-38950091 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr2:24722135-24722245 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr2:39514171-39514061 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-125
Cow position: chr2:17257978-17257881 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 25-132
Cow position: chr2:21382718-21382826 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 25-143
Cow position: chr2:39663502-39663384 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-122
Cow position: chr2:21049197-21049293 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chr2:44222957-44222848 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr2:5604656-5604549 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 27-135
Cow position: chr2:29122013-29121907 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 27-135
Cow position: chr2:30911453-30911345 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr2:45721135-45721243 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr2:46164369-46164476 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 29-129
Cow position: chr2:46143259-46143159 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 89
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 29-130
Cow position: chr2:46312570-46312469 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-133
Cow position: chr2:42608196-42608092 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr2:35948550-35948655 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 29-135
Cow position: chr2:46188966-46189072 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr2:69350437-69350535 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr2:70704386-70704288 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr2:19137762-19137864 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr2:6952595-6952492 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 31-135
Cow position: chr2:45542271-45542375 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-137
Cow position: chr2:46120514-46120619 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 31-140
Cow position: chr2:13328876-13328986 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 0

Conread position: 32-129
Cow position: chr2:39584575-39584479 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 33-129
Cow position: chr2:37891365-37891461 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr2:38640449-38640353 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-133
Cow position: chr2:40728476-40728376 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr2:47879366-47879265 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 34-135
Cow position: chr2:40257287-40257388 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr2:40466755-40466665 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-133
Cow position: chr2:80275174-80275268 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr2:1335575-1335671 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr2:8821352-8821256 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr2:54931719-54931815 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr2:78641371-78641276 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 41-131
Cow position: chr2:44032284-44032375 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 81
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 41-133
Cow position: chr2:75462446-75462354 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr2:17966911-17967005 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr2:18997837-18997743 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr2:21410338-21410243 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 41-135
Cow position: chr2:35208034-35207939 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 41-135
Cow position: chr2:46162075-46161981 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr2:72183373-72183468 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 41-135
Cow position: chr2:83184274-83184178 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 42-131
Cow position: chr2:29860119-29860030 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-133
Cow position: chr2:39368968-39368877 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr20:20242288-20242157 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 20, 124

Conread position: 1-133
Cow position: chr20:23870620-23870751 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 2-121
Cow position: chr20:9537330-9537212 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-127
Cow position: chr20:36023202-36023326 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr20:5636680-5636547 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 19

Conread position: 10-129
Cow position: chr20:19090948-19091069 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 10-130
Cow position: chr20:15589235-15589114 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 20-135
Cow position: chr20:34835533-34835648 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-135
Cow position: chr20:22978507-22978393 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 23-131
Cow position: chr20:5365104-5364996 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr20:15515262-15515372 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 23-133
Cow position: chr20:42469937-42469829 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 27-129
Cow position: chr20:38514952-38514851 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 90
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 31-135
Cow position: chr20:3255207-3255102 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 31-135
Cow position: chr20:9412658-9412554 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 31-143
Cow position: chr20:25161957-25162066 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 33-129
Cow position: chr20:21815729-21815633 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr20:20158304-20158202 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr20:22065234-22065132 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr20:12581793-12581888 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 41-129
Cow position: chr20:36207974-36207886 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-130
Cow position: chr20:20590141-20590230 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr20:10208968-10208875 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 45-133
Cow position: chr20:11359476-11359564 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-132
Cow position: chr21:48478680-48478807 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 2-113
Cow position: chr21:40573841-40573950 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-128
Cow position: chr21:27568955-27569079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr21:734808-734679 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr21:18800315-18800447 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 2-137
Cow position: chr21:5961994-5961861 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 130, 43

Conread position: 6-127
Cow position: chr21:29014341-29014464 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 6-133
Cow position: chr21:13365559-13365431 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 7-122
Cow position: chr21:11057665-11057781 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 7-127
Cow position: chr21:42958532-42958653 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 9-133
Cow position: chr21:23321866-23321989 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 12-109
Cow position: chr21:14674513-14674415 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 12-124
Cow position: chr21:47451382-47451267 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 9, 106

Conread position: 20-133
Cow position: chr21:30835565-30835452 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 20-135
Cow position: chr21:9990712-9990597 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-133
Cow position: chr21:7581704-7581816 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 98
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 23-135
Cow position: chr21:29069127-29069240 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 99
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 0

Conread position: 24-129
Cow position: chr21:641785-641680 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-129
Cow position: chr21:19359979-19360083 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-128
Cow position: chr21:11739924-11740025 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 29-126
Cow position: chr21:8351100-8351197 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr21:39393942-39393841 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 29-130
Cow position: chr21:40930282-40930383 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr21:643517-643411 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr21:8506353-8506459 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr21:8509241-8509347 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr21:28030481-28030376 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 29-197
Cow position: chr21:44732849-44733021 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 94

Conread position: 31-129
Cow position: chr21:30592118-30592216 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr21:27744215-27744114 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 31-133
Cow position: chr21:41287602-41287704 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 32-133
Cow position: chr21:30205183-30205285 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 33-129
Cow position: chr21:14126466-14126370 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr21:32559176-32559272 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr21:5341909-5342007 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr21:802134-802224 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr21:30980397-30980490 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 45-128
Cow position: chr21:37495767-37495852 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-122
Cow position: chr22:14741577-14741699 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 1-134
Cow position: chr22:27431552-27431682 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 2-111
Cow position: chr22:21145446-21145555 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 19

Conread position: 2-128
Cow position: chr22:1871248-1871125 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-131
Cow position: chr22:8504490-8504366 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 112
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 69, 0

Conread position: 2-135
Cow position: chr22:10324039-10323900 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 2-136
Cow position: chr22:1977901-1977768 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 3-133
Cow position: chr22:2627734-2627602 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 3-135
Cow position: chr22:23440145-23440276 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 6-133
Cow position: chr22:41682280-41682406 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 7-122
Cow position: chr22:10315225-10315109 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 14

Conread position: 7-129
Cow position: chr22:749264-749387 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 7-129
Cow position: chr22:27643883-27643763 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 7-133
Cow position: chr22:10286119-10285990 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 76

Conread position: 7-133
Cow position: chr22:13222266-13222142 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 113

Conread position: 7-133
Cow position: chr22:26316605-26316478 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 7-135
Cow position: chr22:31309031-31308904 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 8-131
Cow position: chr22:8480246-8480130 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 8-133
Cow position: chr22:28057904-28058028 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 11-122
Cow position: chr22:3486633-3486745 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 12-123
Cow position: chr22:30253345-30253232 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 9

Conread position: 12-129
Cow position: chr22:22266452-22266334 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 12-135
Cow position: chr22:1563111-1563230 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 12-136
Cow position: chr22:19173846-19173715 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 13-135
Cow position: chr22:21295583-21295704 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 22-122
Cow position: chr22:33565961-33566061 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-133
Cow position: chr22:21890230-21890335 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 27-128
Cow position: chr22:14815979-14816081 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 27-135
Cow position: chr22:14141214-14141322 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-142
Cow position: chr22:1776188-1776073 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 57, 109

Conread position: 29-127
Cow position: chr22:24890347-24890249 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr22:16813922-16813824 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 29-134
Cow position: chr22:7518681-7518576 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr22:3250869-3250974 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 29-135
Cow position: chr22:9735395-9735289 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr22:44717847-44717741 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr22:44741201-44741096 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 31-129
Cow position: chr22:2100822-2100920 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr22:2109503-2109607 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr22:8357710-8357606 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr22:17652559-17652455 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr22:29325530-29325626 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 33-131
Cow position: chr22:10338997-10339095 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-133
Cow position: chr22:3997875-3997775 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr22:31510256-31510360 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 91
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 37-129
Cow position: chr22:9171526-9171434 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr22:23249608-23249709 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 38-129
Cow position: chr22:8710256-8710347 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr22:25742835-25742923 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-130
Cow position: chr22:22606339-22606250 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr22:6326558-6326466 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr22:5616415-5616322 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 45-133
Cow position: chr22:6360074-6360162 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-135
Cow position: chr23:16076004-16076138 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 20, 58

Conread position: 1-135
Cow position: chr23:18354807-18354675 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 2-125
Cow position: chr23:41099619-41099740 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr23:30110004-30109877 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 21

Conread position: 2-133
Cow position: chr23:27030449-27030319 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 19, 56

Conread position: 2-135
Cow position: chr23:12602316-12602449 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 51, 19

Conread position: 3-129
Cow position: chr23:22105717-22105593 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 7-134
Cow position: chr23:3137462-3137330 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 8-126
Cow position: chr23:3223299-3223413 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 8-142
Cow position: chr23:37118560-37118696 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 12-133
Cow position: chr23:35247514-35247395 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 13-119
Cow position: chr23:23724662-23724768 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 103

Conread position: 13-135
Cow position: chr23:39276043-39275917 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 8

Conread position: 20-127
Cow position: chr23:3281982-3282088 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 20-135
Cow position: chr23:40637397-40637284 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 21-135
Cow position: chr23:3408765-3408885 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 23-135
Cow position: chr23:8698558-8698446 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 23-135
Cow position: chr23:22238684-22238796 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-135
Cow position: chr23:5785980-5785870 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 26-133
Cow position: chr23:18823124-18823017 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr23:534359-534253 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr23:39778531-39778433 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 35-133
Cow position: chr23:22530313-22530411 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-128
Cow position: chr23:35199462-35199373 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr23:21502509-21502599 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr23:29458979-29459067 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr23:36022669-36022757 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr23:3244349-3244441 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-126
Cow position: chr24:38114719-38114844 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 113

Conread position: 2-129
Cow position: chr24:28689803-28689673 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 2-133
Cow position: chr24:256160-256027 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 2-136
Cow position: chr24:39345242-39345374 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 118

Conread position: 7-131
Cow position: chr24:43200148-43200271 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 50

Conread position: 10-135
Cow position: chr24:28043100-28042974 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 12-134
Cow position: chr24:33153898-33153776 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 9

Conread position: 17-129
Cow position: chr24:23186799-23186914 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 20-129
Cow position: chr24:34772199-34772308 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 21-135
Cow position: chr24:36775666-36775778 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 25-133
Cow position: chr24:39910925-39911032 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 26-135
Cow position: chr24:2402262-2402369 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 27-133
Cow position: chr24:17104463-17104569 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-128
Cow position: chr24:5754940-5754842 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 29-129
Cow position: chr24:31816683-31816583 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-133
Cow position: chr24:32890939-32891043 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr24:22133274-22133170 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-133
Cow position: chr24:16510078-16509978 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr24:42815626-42815536 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr24:41405987-41405895 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr24:15246550-15246644 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 42-133
Cow position: chr24:24662039-24662130 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr25:40931429-40931300 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 1-131
Cow position: chr25:13735877-13736008 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 1-131
Cow position: chr25:15218286-15218157 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 1-133
Cow position: chr25:36120654-36120521 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-136
Cow position: chr25:35090413-35090548 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 20, 86

Conread position: 4-131
Cow position: chr25:32908091-32907963 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 6-128
Cow position: chr25:15695414-15695291 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 7-129
Cow position: chr25:1840473-1840351 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 7-135
Cow position: chr25:30624935-30625062 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 10-129
Cow position: chr25:15463732-15463614 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 11

Conread position: 20-135
Cow position: chr25:7799683-7799569 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 25-135
Cow position: chr25:9843307-9843197 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chr25:23998794-23998903 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-128
Cow position: chr25:26679355-26679254 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr25:4157117-4157219 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr25:24115187-24115289 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-133
Cow position: chr25:14849524-14849630 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-134
Cow position: chr25:9989984-9990088 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 27-135
Cow position: chr25:15715002-15714894 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr25:8524444-8524545 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 29-129
Cow position: chr25:30852893-30852794 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 29-131
Cow position: chr25:26072435-26072536 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 29-135
Cow position: chr25:13223026-13222921 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 29-135
Cow position: chr25:23244876-23244981 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 31-133
Cow position: chr25:19106542-19106441 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 35-126
Cow position: chr25:14210104-14210013 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 35-135
Cow position: chr25:33457853-33457753 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-137
Cow position: chr25:32277486-32277588 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr25:13272687-13272590 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 39-135
Cow position: chr25:15254231-15254327 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-128
Cow position: chr25:6781976-6781890 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 42-130
Cow position: chr25:36762219-36762131 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-135
Cow position: chr26:34154306-34154174 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 4-135
Cow position: chr26:13020973-13021105 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 6-134
Cow position: chr26:33242059-33241930 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 7-135
Cow position: chr26:107195-107065 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 14

Conread position: 7-135
Cow position: chr26:7212416-7212544 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 9-135
Cow position: chr26:677813-677940 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 12-133
Cow position: chr26:16585599-16585477 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 23-125
Cow position: chr26:24240831-24240729 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-133
Cow position: chr26:34560022-34560129 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-133
Cow position: chr26:21352052-21351945 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 27-135
Cow position: chr26:28410134-28410023 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 35-135
Cow position: chr26:13705638-13705737 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 39-135
Cow position: chr26:20769987-20769891 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-136
Cow position: chr26:20291556-20291653 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-119
Cow position: chr26:7525072-7525150 (view UCSC Genome Browser custom track)
Alignm length: 79
Alignm identity: 71
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr26:8341629-8341538 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 43-135
Cow position: chr26:33201938-33202030 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-135
Cow position: chr26:12940531-12940440 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-129
Cow position: chr27:237068-237196 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 19, 96

Conread position: 4-135
Cow position: chr27:11466664-11466532 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 55

Conread position: 7-100
Cow position: chr27:30804006-30804100 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 7-130
Cow position: chr27:30489604-30489482 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 7-133
Cow position: chr27:20336908-20337033 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 7-135
Cow position: chr27:22348296-22348423 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 12-136
Cow position: chr27:20497019-20497140 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 21-128
Cow position: chr27:26323268-26323375 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-137
Cow position: chr27:31183395-31183511 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 24-129
Cow position: chr27:29183394-29183289 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 26-129
Cow position: chr27:19576499-19576396 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chr27:13204284-13204392 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 30-129
Cow position: chr27:31031283-31031382 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 30-135
Cow position: chr27:7412221-7412326 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr27:17397625-17397521 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-130
Cow position: chr27:18435294-18435205 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-135
Cow position: chr27:6674121-6674212 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 1-127
Cow position: chr28:12631699-12631574 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 55

Conread position: 2-135
Cow position: chr28:6971188-6971320 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr28:13232949-13233091 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 3-133
Cow position: chr28:20313440-20313307 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 3-143
Cow position: chr28:19025844-19025984 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 127

Conread position: 6-133
Cow position: chr28:34247874-34247999 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 7-163
Cow position: chr28:5365966-5366121 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 104

Conread position: 11-133
Cow position: chr28:4355699-4355577 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 63

Conread position: 20-133
Cow position: chr28:20759559-20759671 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 20-135
Cow position: chr28:4159098-4158983 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr28:10212291-10212393 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr28:13474435-13474334 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 29-135
Cow position: chr28:4013218-4013112 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr28:5204329-5204221 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 29-135
Cow position: chr28:8787674-8787568 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 69

Conread position: 29-136
Cow position: chr28:7350788-7350681 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 93
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 31-134
Cow position: chr28:7498015-7498118 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr28:3492652-3492756 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr28:5255006-5254902 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr28:10863660-10863764 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr28:16879703-16879607 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr28:30902256-30902160 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 35-135
Cow position: chr28:12991270-12991170 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 37-131
Cow position: chr28:32179819-32179725 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-128
Cow position: chr28:11305509-11305598 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-122
Cow position: chr28:11828840-11828921 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 74
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-131
Cow position: chr28:8681308-8681398 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr28:4866451-4866544 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 41-135
Cow position: chr28:3914839-3914745 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-133
Cow position: chr29:25333305-25333436 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 115

Conread position: 2-135
Cow position: chr29:10156153-10156281 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr29:17022303-17022171 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr29:35070931-35071063 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 3-129
Cow position: chr29:34687987-34687862 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 4-133
Cow position: chr29:13867060-13867187 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 9-107
Cow position: chr29:6033995-6034092 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 16-134
Cow position: chr29:27589063-27588945 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 23-131
Cow position: chr29:935053-934946 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 23-133
Cow position: chr29:629671-629561 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 25-113
Cow position: chr29:36357257-36357169 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr29:39038138-39038242 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 29-135
Cow position: chr29:17110084-17109981 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 29-135
Cow position: chr29:19363837-19363732 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 30-131
Cow position: chr29:18579713-18579814 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr29:36781181-36781283 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 35-129
Cow position: chr29:41112760-41112854 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-131
Cow position: chr29:4070743-4070649 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 42-129
Cow position: chr29:7290890-7290803 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-85
Cow position: chr3:63133491-63133406 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-122
Cow position: chr3:74243126-74243005 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 57

Conread position: 1-133
Cow position: chr3:17934807-17934937 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr3:20175179-20175047 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 2-112
Cow position: chr3:20719179-20719288 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-122
Cow position: chr3:73442965-73443080 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-131
Cow position: chr3:15752503-15752637 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 121

Conread position: 2-133
Cow position: chr3:64373023-64373155 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 2-135
Cow position: chr3:15506580-15506448 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 19

Conread position: 2-135
Cow position: chr3:20334138-20334006 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 19

Conread position: 3-131
Cow position: chr3:7428128-7428001 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 3-133
Cow position: chr3:57760630-57760499 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 4-133
Cow position: chr3:4258103-4258234 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 4-135
Cow position: chr3:24372051-24371921 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 113, 0

Conread position: 7-129
Cow position: chr3:22716170-22716293 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 46, 14

Conread position: 7-133
Cow position: chr3:29413189-29413061 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 9-122
Cow position: chr3:13349027-13349140 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 35, 12

Conread position: 9-132
Cow position: chr3:55320482-55320607 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 12

Conread position: 13-133
Cow position: chr3:59616943-59617064 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 15-129
Cow position: chr3:83474863-83474750 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 15-135
Cow position: chr3:4481060-4480941 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 20-133
Cow position: chr3:66014424-66014310 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 20-135
Cow position: chr3:15173195-15173080 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 22-135
Cow position: chr3:49363220-49363108 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 23-134
Cow position: chr3:3738592-3738482 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 25-129
Cow position: chr3:13507577-13507473 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-125
Cow position: chr3:77098716-77098814 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr3:78092405-78092506 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 27-135
Cow position: chr3:70565630-70565739 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 27-135
Cow position: chr3:75107880-75107773 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 29-129
Cow position: chr3:75080865-75080768 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 29-135
Cow position: chr3:56059916-56059810 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr3:59610612-59610719 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 29-135
Cow position: chr3:64196931-64196825 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr3:74234291-74234185 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-136
Cow position: chr3:52845661-52845554 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr3:17058443-17058541 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr3:55984201-55984100 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 31-135
Cow position: chr3:54946234-54946130 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-136
Cow position: chr3:8349461-8349565 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 32-143
Cow position: chr3:53222115-53222004 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 35-133
Cow position: chr3:28556063-28556161 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 36-135
Cow position: chr3:31361523-31361424 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr3:55271948-55272046 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-134
Cow position: chr3:44330342-44330437 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr3:16752164-16752259 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 40-135
Cow position: chr3:5305892-5305797 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr3:27670506-27670418 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr3:53150424-53150336 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr3:60264623-60264717 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-135
Cow position: chr3:51349913-51349822 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-131
Cow position: chr4:20843068-20842930 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-133
Cow position: chr4:21532947-21533078 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 37

Conread position: 2-135
Cow position: chr4:10379263-10379126 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 2-135
Cow position: chr4:10851301-10851434 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 116

Conread position: 2-135
Cow position: chr4:48396644-48396780 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 3-130
Cow position: chr4:28067963-28068089 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 69

Conread position: 5-133
Cow position: chr4:51920691-51920562 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 6-133
Cow position: chr4:41291808-41291933 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 15, 114

Conread position: 10-135
Cow position: chr4:8894-9017 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 41

Conread position: 20-122
Cow position: chr4:19700226-19700124 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 20-126
Cow position: chr4:19420626-19420732 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr4:2593975-2593868 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 97
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 20-130
Cow position: chr4:36731323-36731211 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 20-133
Cow position: chr4:54937212-54937099 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-129
Cow position: chr4:14153237-14153129 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 24-135
Cow position: chr4:20026976-20027087 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 48

Conread position: 26-127
Cow position: chr4:17051162-17051262 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 26-138
Cow position: chr4:54541514-54541625 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 27-128
Cow position: chr4:41907458-41907559 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-133
Cow position: chr4:46476822-46476928 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr4:38944136-38944236 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr4:47048239-47048139 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr4:44854169-44854275 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-136
Cow position: chr4:27276422-27276529 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 30-133
Cow position: chr4:60141401-60141503 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 31-134
Cow position: chr4:3421746-3421639 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 31-135
Cow position: chr4:479672-479776 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-135
Cow position: chr4:37915216-37915320 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr4:34983381-34983477 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr4:19435373-19435271 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-136
Cow position: chr4:27657094-27656992 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 35-135
Cow position: chr4:60719217-60719117 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 36-135
Cow position: chr4:27530233-27530134 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr4:3519533-3519443 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 80
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr4:17774238-17774334 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr4:46761717-46761625 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr4:54191199-54191107 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chr4:16221767-16221861 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-129
Cow position: chr4:59002031-59002117 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 79
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 42-135
Cow position: chr4:4085002-4085095 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-129
Cow position: chr5:24069572-24069445 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 58

Conread position: 1-133
Cow position: chr5:63987261-63987394 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 116

Conread position: 1-135
Cow position: chr5:35982550-35982689 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr5:43992506-43992373 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 1-143
Cow position: chr5:61102900-61102756 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 2-122
Cow position: chr5:1090641-1090760 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 2-128
Cow position: chr5:23168643-23168770 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr5:4221158-4221029 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr5:54767728-54767858 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 4-129
Cow position: chr5:64591914-64592040 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 6-136
Cow position: chr5:4956435-4956564 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 7-135
Cow position: chr5:18054798-18054668 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 65

Conread position: 15-109
Cow position: chr5:50533218-50533313 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 20-119
Cow position: chr5:32975922-32975823 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-129
Cow position: chr5:25495194-25495303 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 20-132
Cow position: chr5:43457367-43457481 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 21-133
Cow position: chr5:4709989-4710100 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 21-133
Cow position: chr5:49501661-49501773 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-109
Cow position: chr5:64142496-64142580 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-129
Cow position: chr5:30253900-30253796 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-134
Cow position: chr5:24996062-24996172 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 84

Conread position: 26-129
Cow position: chr5:5110911-5111019 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 27-129
Cow position: chr5:17602048-17602150 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-131
Cow position: chr5:4981607-4981503 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-133
Cow position: chr5:54312758-54312652 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 28-135
Cow position: chr5:9233832-9233940 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 29-128
Cow position: chr5:21721315-21721414 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr5:49207172-49207272 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-137
Cow position: chr5:67340038-67339933 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 31-129
Cow position: chr5:32338813-32338910 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 31-129
Cow position: chr5:34918500-34918401 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 31-135
Cow position: chr5:38647793-38647689 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 32-125
Cow position: chr5:46479090-46479183 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chr5:29599395-29599491 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 34-129
Cow position: chr5:5847696-5847791 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 34-135
Cow position: chr5:22242615-22242717 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 85

Conread position: 35-135
Cow position: chr5:55942230-55942330 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr5:46421735-46421635 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 41-133
Cow position: chr5:60948275-60948184 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 41-134
Cow position: chr5:40109635-40109543 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 45-129
Cow position: chr5:64026880-64026964 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-130
Cow position: chr6:32809481-32809349 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 1-135
Cow position: chr6:19131626-19131493 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 2-129
Cow position: chr6:21869454-21869580 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 2-133
Cow position: chr6:6343624-6343491 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 109, 19

Conread position: 3-119
Cow position: chr6:20192105-20192220 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 4-126
Cow position: chr6:28178760-28178883 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 6-130
Cow position: chr6:21066692-21066815 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 6-132
Cow position: chr6:47676203-47676079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 6-135
Cow position: chr6:8209413-8209542 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 36

Conread position: 7-122
Cow position: chr6:6401140-6401027 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 7-129
Cow position: chr6:28900516-28900395 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 7-135
Cow position: chr6:7130688-7130817 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 9-107
Cow position: chr6:58227568-58227471 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 9-133
Cow position: chr6:19519561-19519440 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 10-133
Cow position: chr6:35654361-35654485 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 12-133
Cow position: chr6:59301603-59301723 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 16-122
Cow position: chr6:18422808-18422917 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 20-131
Cow position: chr6:29852888-29852999 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-135
Cow position: chr6:15243432-15243318 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-129
Cow position: chr6:67451196-67451302 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 25-131
Cow position: chr6:57546056-57546161 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 25-135
Cow position: chr6:12761451-12761342 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 25-135
Cow position: chr6:38640406-38640296 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr6:10105808-10105916 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 30-135
Cow position: chr6:51933717-51933617 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 31-135
Cow position: chr6:29485251-29485145 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 35-129
Cow position: chr6:47575069-47574975 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-133
Cow position: chr6:5600698-5600796 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 37-129
Cow position: chr6:60186502-60186594 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr6:8966256-8966166 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-125
Cow position: chr6:3936939-3936855 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr6:44194393-44194480 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 41-131
Cow position: chr6:36570616-36570526 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-135
Cow position: chr6:28976884-28976977 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-133
Cow position: chr7:25511927-25512057 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr7:38082354-38082221 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 57

Conread position: 1-144
Cow position: chr7:24717358-24717498 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 2-133
Cow position: chr7:147612-147481 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 102, 19

Conread position: 3-129
Cow position: chr7:28917290-28917162 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 3-135
Cow position: chr7:39472317-39472449 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 18

Conread position: 7-133
Cow position: chr7:61552114-61551987 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 8-124
Cow position: chr7:7768027-7768142 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 93

Conread position: 9-130
Cow position: chr7:1783027-1783147 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 9-135
Cow position: chr7:36278489-36278364 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 56

Conread position: 10-133
Cow position: chr7:37466704-37466580 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 13-122
Cow position: chr7:41315250-41315358 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 13-135
Cow position: chr7:598427-598309 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 20-133
Cow position: chr7:9137018-9136905 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-133
Cow position: chr7:13593947-13593836 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 21-133
Cow position: chr7:17816928-17816816 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-135
Cow position: chr7:36665500-36665390 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 22-133
Cow position: chr7:23568557-23568669 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 22-135
Cow position: chr7:4720053-4720163 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 24-133
Cow position: chr7:29505291-29505182 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 24-134
Cow position: chr7:23170009-23169899 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 25-129
Cow position: chr7:11487499-11487601 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 25-133
Cow position: chr7:40067835-40067728 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 25-135
Cow position: chr7:31523720-31523610 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-129
Cow position: chr7:47513512-47513613 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 27-133
Cow position: chr7:50166202-50166096 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr7:26737173-26737281 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr7:15570209-15570103 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr7:14317111-14317013 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 31-129
Cow position: chr7:15559856-15559758 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-133
Cow position: chr7:63946417-63946519 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-131
Cow position: chr7:30931810-30931908 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 33-134
Cow position: chr7:55688028-55688128 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 33-135
Cow position: chr7:4765011-4764910 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 36-135
Cow position: chr7:12488598-12488498 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 37-132
Cow position: chr7:38357477-38357572 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-133
Cow position: chr7:34974470-34974376 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr7:9734101-9734005 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr7:17713310-17713406 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr7:23671913-23671817 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr7:23936270-23936182 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr7:13096138-13096046 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-122
Cow position: chr8:32197972-32198096 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 1-128
Cow position: chr8:39174073-39174202 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 1-129
Cow position: chr8:17167737-17167610 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 1-133
Cow position: chr8:7149534-7149664 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 1-135
Cow position: chr8:50709221-50709088 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 2-122
Cow position: chr8:37581718-37581835 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 2-126
Cow position: chr8:19997856-19997982 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chr8:38682044-38681918 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 3-129
Cow position: chr8:60585051-60585177 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 4-135
Cow position: chr8:28987863-28987733 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 4-135
Cow position: chr8:52229525-52229657 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 116

Conread position: 7-135
Cow position: chr8:44847777-44847646 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 19-135
Cow position: chr8:58081959-58082070 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 21-133
Cow position: chr8:37275905-37275794 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 23-133
Cow position: chr8:36397539-36397649 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 73

Conread position: 23-135
Cow position: chr8:3887478-3887366 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 25-135
Cow position: chr8:55194317-55194205 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 27-129
Cow position: chr8:20879275-20879376 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 27-131
Cow position: chr8:13922780-13922676 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-131
Cow position: chr8:19785001-19784896 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 27-133
Cow position: chr8:43167886-43167992 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr8:27955012-27955117 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 29-135
Cow position: chr8:34060021-34060128 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 29-135
Cow position: chr8:35580495-35580601 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr8:42762291-42762397 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr8:44449464-44449570 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 16

Conread position: 31-127
Cow position: chr8:35936903-35936807 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-135
Cow position: chr8:35452708-35452608 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 37-131
Cow position: chr8:23179414-23179507 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 37-135
Cow position: chr8:42794190-42794288 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 37-135
Cow position: chr8:55089717-55089815 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-129
Cow position: chr8:32278219-32278308 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 39-129
Cow position: chr8:53481943-53481853 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr8:3793282-3793186 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 40-133
Cow position: chr8:50682231-50682138 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 84
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 41-128
Cow position: chr8:43153562-43153649 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-133
Cow position: chr8:20339403-20339311 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-135
Cow position: chr8:55070844-55070751 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 43-135
Cow position: chr8:36531478-36531571 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 43-202
Cow position: chr8:5877769-5877611 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 44-128
Cow position: chr8:46743191-46743275 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-109
Cow position: chr9:36826781-36826886 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 2-133
Cow position: chr9:34811350-34811480 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 2-148
Cow position: chr9:46190014-46190160 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 134

Conread position: 3-135
Cow position: chr9:32982200-32982069 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 4-125
Cow position: chr9:41648132-41648011 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 61

Conread position: 4-128
Cow position: chr9:1323783-1323660 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 55

Conread position: 6-133
Cow position: chr9:34065674-34065546 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 6-136
Cow position: chr9:9461776-9461651 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 7-125
Cow position: chr9:38645465-38645348 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 14

Conread position: 7-133
Cow position: chr9:33681538-33681663 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 7-135
Cow position: chr9:6293473-6293601 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 14

Conread position: 10-129
Cow position: chr9:46316895-46316783 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 12-129
Cow position: chr9:34264979-34265095 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 12-130
Cow position: chr9:23788323-23788440 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 20-135
Cow position: chr9:4268093-4267976 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 21-129
Cow position: chr9:56772968-56773075 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 27-133
Cow position: chr9:52998481-52998376 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 27-135
Cow position: chr9:34024598-34024705 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 27-135
Cow position: chr9:34286697-34286805 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-135
Cow position: chr9:57131393-57131501 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr9:23840494-23840394 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chr9:24887104-24887206 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 29-134
Cow position: chr9:32052176-32052281 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr9:4341259-4341153 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chr9:37199028-37199133 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 31-135
Cow position: chr9:31079177-31079076 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 31-136
Cow position: chr9:28354419-28354524 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-136
Cow position: chr9:55256650-55256545 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 32-135
Cow position: chr9:9459887-9459991 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 35-135
Cow position: chr9:19758627-19758726 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 37-133
Cow position: chr9:9551999-9552094 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 39-135
Cow position: chr9:43159662-43159758 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chr9:55354521-55354617 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 40-130
Cow position: chr9:9443690-9443600 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 77
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 40-133
Cow position: chr9:8834216-8834123 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chr9:23403730-23403818 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 41-132
Cow position: chr9:26279257-26279166 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-130
Cow position: chrX:33640160-33640030 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 1-134
Cow position: chrX:41884227-41884361 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 2-122
Cow position: chrX:29327946-29327825 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 2-129
Cow position: chrX:17726158-17726031 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 19

Conread position: 2-133
Cow position: chrX:20743785-20743656 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 3-129
Cow position: chrX:878199-878324 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 4-128
Cow position: chrX:8797431-8797306 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 6-133
Cow position: chrX:27667606-27667477 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 7-122
Cow position: chrX:29050426-29050310 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 7-129
Cow position: chrX:40531864-40531987 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 7-133
Cow position: chrX:5872494-5872369 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 7-134
Cow position: chrX:40557496-40557628 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 7-136
Cow position: chrX:6850388-6850260 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 45

Conread position: 9-135
Cow position: chrX:34508721-34508594 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 112
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 12, 0

Conread position: 10-133
Cow position: chrX:47342289-47342167 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 12-135
Cow position: chrX:38853372-38853248 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 41, 9

Conread position: 21-135
Cow position: chrX:45670384-45670271 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 24

Conread position: 23-122
Cow position: chrX:33493939-33493839 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 23-134
Cow position: chrX:32942916-32943025 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 99, 31

Conread position: 23-141
Cow position: chrX:24547339-24547458 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 24-129
Cow position: chrX:13177315-13177420 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 24-131
Cow position: chrX:23188623-23188730 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 25-129
Cow position: chrX:20957398-20957294 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 26-135
Cow position: chrX:2936115-2936007 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 27-119
Cow position: chrX:24633853-24633761 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 27-144
Cow position: chrX:11656239-11656123 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 27-144
Cow position: chrX:13647627-13647743 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 29-129
Cow position: chrX:8869245-8869346 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 29-129
Cow position: chrX:27668802-27668902 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 29-129
Cow position: chrX:40685172-40685272 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-135
Cow position: chrX:23471709-23471816 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 29-135
Cow position: chrX:40046422-40046525 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 31-129
Cow position: chrX:31436628-31436530 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 31-131
Cow position: chrX:23497538-23497637 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 31-135
Cow position: chrX:23136893-23136790 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 33-128
Cow position: chrX:17525715-17525810 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-129
Cow position: chrX:6599630-6599726 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 35-133
Cow position: chrX:23092023-23091922 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 35-135
Cow position: chrX:31983435-31983535 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 35-135
Cow position: chrX:42380962-42381062 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chrX:20583812-20583716 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 39-135
Cow position: chrX:34314170-34314074 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-129
Cow position: chrX:20584472-20584384 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-130
Cow position: chrX:6480452-6480541 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 41-135
Cow position: chrX:4615868-4615960 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 41-135
Cow position: chrX:31312173-31312079 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 41-136
Cow position: chrX:34411990-34411895 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0