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Cow genome map

           
Conread name:
           
Pig4-TMW8057O21
        

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:50874429-50874183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
225, 124
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:97593760-97594019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr1:16761244-16761524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
224, 122
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr1:82967261-82966968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr1:49597203-49597494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr1:15933051-15933171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr1:28705648-28705496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr1:94556085-94555815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
223, 8
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr1:43820285-43820559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr1:45426224-45426508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
161, 48
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr1:42742115-42742395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr1:19384217-19383959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 70
               

               
Conread position:
               
140-290
               

               
Cow position:
               
chr1:69719454-69719605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr10:47189882-47190126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr10:16269023-16268741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 135
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr10:68935365-68935646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
225, 123
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr10:62767140-62766713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 144
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr10:33863587-33863289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr10:50579723-50579984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
16-293
               

               
Cow position:
               
chr10:28702981-28702714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
210, 29
               

               
Conread position:
               
17-280
               

               
Cow position:
               
chr10:67914880-67914632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
28-296
               

               
Cow position:
               
chr10:1942761-1942499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
416-738
               

               
Cow position:
               
chr10:62766494-62766159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr11:65155783-65156052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr11:43272619-43272830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 70
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr11:60451972-60451693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr11:48264752-48264471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr11:59852842-59853123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr11:70864543-70864825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
4-128
               

               
Cow position:
               
chr11:20960204-20960077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr11:72454133-72454375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
175, 117
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr11:80319865-80319597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
217, 114
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chr11:37453524-37453807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
220, 119
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr11:55796475-55796775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
11-293
               

               
Cow position:
               
chr11:42505736-42505458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr12:4825008-4825156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr12:10523466-10523211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr12:6393356-6393641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr12:33257709-33257395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
2-120
               

               
Cow position:
               
chr12:33797349-33797467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
2-286
               

               
Cow position:
               
chr12:6538585-6538292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
120, 130
               

               
Conread position:
               
4-140
               

               
Cow position:
               
chr12:22962676-22962540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
87, 82
               

               
Conread position:
               
4-141
               

               
Cow position:
               
chr12:38171282-38171145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr12:33089264-33089478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr12:26548891-26549168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
222, 37
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr12:33483547-33483823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
222, 108
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr12:3993048-3992766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
164, 119
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr12:38179205-38179479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
159, 113
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr13:8503400-8503617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 44
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr13:18310474-18310198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr13:17942528-17942776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr13:48352814-48352573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr13:56510425-56510141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
106, 144
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr13:15638239-15638510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr14:48398369-48398624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr14:2022181-2022493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr14:35325886-35325673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr14:25124404-25124126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
221, 103
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chr14:8593800-8593517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr15:46490709-46490825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr15:27429071-27428758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr15:43529935-43529651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
94, 85
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr15:8044868-8044619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
89, 84
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr15:10572357-10572681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr15:38554143-38553992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 113
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr15:14108114-14107827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 141
               

               
Conread position:
               
11-152
               

               
Cow position:
               
chr15:36714309-36714165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr16:29314762-29314487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr16:8855279-8855555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr16:2581587-2581308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
175, 116
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr16:7557936-7557701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
116, 136
               

               
Conread position:
               
8-275
               

               
Cow position:
               
chr16:29519581-29519835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
218, 40
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr16:26112450-26112721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 68
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr17:28115949-28116224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 124
               

               
Conread position:
               
14-295
               

               
Cow position:
               
chr17:37399398-37399669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr18:38463356-38463597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
166, 120
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr18:20926440-20926713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
123, 85
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr18:8276479-8276201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr18:5058898-5058597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
208, 126
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:28959398-28959674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr18:16676436-16676751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
224, 122
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr18:35698730-35699009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 140
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr18:20907919-20907640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
13-290
               

               
Cow position:
               
chr18:16648126-16647850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr18:33248966-33248781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr18:40669253-40668990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr19:48950688-48950997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr19:11007137-11006922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 85
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr19:9199439-9199172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr19:52984901-52985151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
145, 119
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr19:25841258-25840986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 81
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr19:43222025-43221752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
53-292
               

               
Cow position:
               
chr19:4008764-4008535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr2:26414371-26414662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr2:62981562-62981839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr2:68001658-68001960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
123, 155
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr2:34209385-34209672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
179, 119
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr2:61234947-61235282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr2:11303082-11302816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
90, 83
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr2:34918480-34918757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
4-138
               

               
Cow position:
               
chr2:70918242-70918380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
19-322
               

               
Cow position:
               
chr2:81745658-81745950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
256, 105
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr20:13156513-13156312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
6, 38
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr20:5916891-5917190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chr20:21298814-21298554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
87, 80
               

               
Conread position:
               
12-295
               

               
Cow position:
               
chr20:12309400-12309109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
214, 112
               

               
Conread position:
               
23-293
               

               
Cow position:
               
chr20:39730050-39730313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr21:16785429-16785294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr21:4510837-4511108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr22:3534570-3534445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr22:47573123-47572875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr22:32849536-32849251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
211, 108
               

               
Conread position:
               
16-221
               

               
Cow position:
               
chr22:20683288-20683488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr23:39211535-39211247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr23:8242693-8242965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
120, 124
               

               
Conread position:
               
37-306
               

               
Cow position:
               
chr23:23191594-23191340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 102
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr24:42833444-42833156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr24:20204677-20204945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr24:37832891-37833169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
223, 121
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr24:12519755-12519447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr24:23219870-23219610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
213, 66
               

               
Conread position:
               
21-295
               

               
Cow position:
               
chr24:35063591-35063857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
205, 65
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr24:37914065-37913870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 59
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr25:15270998-15270713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
119, 130
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr25:5130532-5130295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr25:16905054-16905309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 43
               

               
Conread position:
               
6-139
               

               
Cow position:
               
chr25:3967669-3967801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
13-285
               

               
Cow position:
               
chr25:16088104-16088382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
201, 132
               

               
Conread position:
               
16-260
               

               
Cow position:
               
chr25:7760802-7760560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr26:28125635-28125356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
96, 82
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr26:17613537-17613274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
163, 105
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr27:4362759-4363027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
19-293
               

               
Cow position:
               
chr27:15757792-15757522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr28:3183426-3183151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
122, 126
               

               
Conread position:
               
76-302
               

               
Cow position:
               
chr28:6293139-6293369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr29:310828-310709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr29:29736922-29737181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr3:26481415-26481627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr3:3376367-3376155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr3:58516651-58516393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr3:42012446-42012163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr3:20678798-20679124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr3:3967329-3967119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr4:34904644-34904365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr5:2181796-2181653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr5:29363409-29363692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 80
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr5:34057754-34057474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr5:36399179-36399299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
4-134
               

               
Cow position:
               
chr5:39022003-39021870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 82
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr5:23962087-23961807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 82
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr5:14299083-14298810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
221, 28
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr6:18098888-18098607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr6:6176843-6176560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
123, 48
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:62635813-62636091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:23436498-23436787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 93
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr6:59080301-59080581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
11-328
               

               
Cow position:
               
chr6:36856662-36856353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
12-285
               

               
Cow position:
               
chr6:53341962-53341689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
14-293
               

               
Cow position:
               
chr6:23411337-23411065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
16-286
               

               
Cow position:
               
chr6:60478699-60478978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
16-293
               

               
Cow position:
               
chr6:23447873-23447602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr7:36066444-36066195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
225, 46
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr7:64270615-64270334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
6-250
               

               
Cow position:
               
chr7:935157-934911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
118, 39
               

               
Conread position:
               
13-318
               

               
Cow position:
               
chr7:58333149-58333446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 64
               

               
Conread position:
               
18-285
               

               
Cow position:
               
chr7:43990975-43991246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 68
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr8:34500533-34500326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr8:36599877-36599681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 85
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr8:36020574-36020853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
222, 123
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr8:2275203-2274918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr8:48624243-48624548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr8:49040413-49040707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr8:45179437-45179192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
128, 141
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr8:3702487-3702201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr8:32510542-32510870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
118, 47
               

               
Conread position:
               
18-329
               

               
Cow position:
               
chr8:56559227-56559527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
104, 110
               

               
Conread position:
               
45-333
               

               
Cow position:
               
chr8:25246448-25246174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr9:34077922-34077801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr9:17717515-17717388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr9:21251955-21252234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr9:14385891-14385611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr9:51554394-51554108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr9:17666090-17665873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr9:28370819-28371091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr9:46492336-46492560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 46
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr9:46284692-46284413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
222, 41
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr9:9659436-9659145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
119, 149
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr9:40108165-40108445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 174
               

               
Conread position:
               
16-290
               

               
Cow position:
               
chr9:33172392-33172659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
25-293
               

               
Cow position:
               
chr9:42739095-42738844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
201, 77
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chrX:30839099-30838948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chrX:8924220-8923937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 47
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chrX:25361208-25361488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:42521930-42521645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
206, 42
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chrX:10989814-10990091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
219, 25
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chrX:4280369-4280651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chrX:30732662-30732402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
261, 125
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chrX:38173828-38174102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
226, 40
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chrX:29524532-29524848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
220, 118
               

               
Conread position:
               
12-214
               

               
Cow position:
               
chrX:25974948-25974755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 116
               

               
Conread position:
               
16-287
               

               
Cow position:
               
chrX:33779669-33779405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chrX:32771827-32772062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 9