Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig4-TMW8065G24
        

               Conread position:
               1-500
               

               Cow position:
               chr1:98551338-98551842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 21
               

               Conread position:
               1-572
               

               Cow position:
               chr1:81290138-81290708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 204
               

               Conread position:
               1-578
               

               Cow position:
               chr1:41696678-41697263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               1-585
               

               Cow position:
               chr1:1981494-1980893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 228
               

               Conread position:
               1-586
               

               Cow position:
               chr1:81569419-81568811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 321
               

               Conread position:
               2-555
               

               Cow position:
               chr1:57576144-57575577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 144
               

               Conread position:
               3-400
               

               Cow position:
               chr1:665990-666388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 69
               

               Conread position:
               3-554
               

               Cow position:
               chr1:92963009-92963563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 239
               

               Conread position:
               3-578
               

               Cow position:
               chr1:82936965-82936395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 229
               

               Conread position:
               4-528
               

               Cow position:
               chr1:52039256-52039793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 158
               

               Conread position:
               11-421
               

               Cow position:
               chr1:82884758-82884350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 151
               

               Conread position:
               11-497
               

               Cow position:
               chr1:3167439-3166953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 150
               

               Conread position:
               11-559
               

               Cow position:
               chr1:54207189-54206628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               12-577
               

               Cow position:
               chr1:8251-8827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 69
               

               Conread position:
               13-397
               

               Cow position:
               chr1:3035360-3034980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 45
               

               Conread position:
               21-555
               

               Cow position:
               chr1:62963921-62964455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 14
               

               Conread position:
               37-454
               

               Cow position:
               chr1:20204678-20205106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 205
               

               Conread position:
               38-559
               

               Cow position:
               chr1:24133397-24132872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 47
               

               Conread position:
               44-562
               

               Cow position:
               chr1:101713775-101714310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 54
               

               Conread position:
               66-554
               

               Cow position:
               chr1:41056366-41056866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 126
               

               Conread position:
               70-486
               

               Cow position:
               chr1:88652317-88652747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 91
               

               Conread position:
               88-500
               

               Cow position:
               chr1:81613089-81613512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 410
               

               Conread position:
               110-558
               

               Cow position:
               chr1:97954719-97954293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               96, 56
               

               Conread position:
               114-559
               

               Cow position:
               chr1:14379798-14379359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               305
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               117-319
               

               Cow position:
               chr1:82338049-82337847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 71
               

               Conread position:
               117-430
               

               Cow position:
               chr1:80899844-80900172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               152, 41
               

               Conread position:
               117-575
               

               Cow position:
               chr1:197266-196799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 52
               

               Conread position:
               120-397
               

               Cow position:
               chr1:45535441-45535726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               201, 46
               

               Conread position:
               121-576
               

               Cow position:
               chr1:61884655-61885121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 242
               

               Conread position:
               129-577
               

               Cow position:
               chr1:78810784-78811247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 29
               

               Conread position:
               130-506
               

               Cow position:
               chr1:47233726-47233349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 97
               

               Conread position:
               130-514
               

               Cow position:
               chr1:71253806-71253419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 106
               

               Conread position:
               130-575
               

               Cow position:
               chr1:43505272-43505732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 92
               

               Conread position:
               133-554
               

               Cow position:
               chr1:93528442-93528880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               288
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               149, 287
               

               Conread position:
               133-572
               

               Cow position:
               chr1:70538355-70538810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               133-578
               

               Cow position:
               chr1:78857570-78857116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 25
               

               Conread position:
               135-454
               

               Cow position:
               chr1:92369470-92369817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               54, 23
               

               Conread position:
               141-559
               

               Cow position:
               chr1:71079193-71078771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 25
               

               Conread position:
               149-562
               

               Cow position:
               chr1:43389280-43388860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 76
               

               Conread position:
               163-500
               

               Cow position:
               chr1:93043807-93044140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               172-578
               

               Cow position:
               chr1:68862826-68863229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               136, 48
               

               Conread position:
               188-555
               

               Cow position:
               chr1:58754978-58754611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               131, 32
               

               Conread position:
               205-555
               

               Cow position:
               chr1:89388155-89388530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               57, 124
               

               Conread position:
               222-578
               

               Cow position:
               chr1:86110895-86110535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               12, 121
               

               Conread position:
               232-545
               

               Cow position:
               chr1:87197674-87197997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               108, 71
               

               Conread position:
               238-586
               

               Cow position:
               chr1:91023615-91023249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               83, 179
               

               Conread position:
               244-451
               

               Cow position:
               chr1:87440327-87440543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 80
               

               Conread position:
               273-577
               

               Cow position:
               chr1:56618763-56618444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               48, 167
               

               Conread position:
               325-559
               

               Cow position:
               chr1:54267991-54267749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               341-577
               

               Cow position:
               chr1:81481421-81481176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               15, 149
               

               Conread position:
               1-415
               

               Cow position:
               chr10:55580672-55580266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 118
               

               Conread position:
               1-500
               

               Cow position:
               chr10:5150928-5151440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 236
               

               Conread position:
               1-559
               

               Cow position:
               chr10:1979087-1978511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 289
               

               Conread position:
               1-577
               

               Cow position:
               chr10:20095351-20095946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 23
               

               Conread position:
               1-577
               

               Cow position:
               chr10:21657011-21657590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 124
               

               Conread position:
               1-584
               

               Cow position:
               chr10:24756020-24756596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 178
               

               Conread position:
               2-558
               

               Cow position:
               chr10:9576460-9575889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 160
               

               Conread position:
               2-577
               

               Cow position:
               chr10:34655524-34654932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 222
               

               Conread position:
               3-456
               

               Cow position:
               chr10:8922869-8923331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 67
               

               Conread position:
               3-559
               

               Cow position:
               chr10:22390185-22390757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 144
               

               Conread position:
               3-559
               

               Cow position:
               chr10:25342176-25342743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 60
               

               Conread position:
               11-564
               

               Cow position:
               chr10:46195393-46195946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 149
               

               Conread position:
               11-575
               

               Cow position:
               chr10:35731932-35731350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 73
               

               Conread position:
               16-572
               

               Cow position:
               chr10:2612982-2613540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 78
               

               Conread position:
               17-561
               

               Cow position:
               chr10:33665445-33666005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 41
               

               Conread position:
               24-572
               

               Cow position:
               chr10:26732040-26731494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 376
               

               Conread position:
               32-559
               

               Cow position:
               chr10:51943980-51944519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 129
               

               Conread position:
               36-578
               

               Cow position:
               chr10:3998532-3999070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 22
               

               Conread position:
               44-413
               

               Cow position:
               chr10:64437547-64437934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               79, 22
               

               Conread position:
               47-559
               

               Cow position:
               chr10:6489502-6490039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 64
               

               Conread position:
               47-577
               

               Cow position:
               chr10:57785968-57786515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 179
               

               Conread position:
               50-575
               

               Cow position:
               chr10:55733964-55733433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 160
               

               Conread position:
               58-575
               

               Cow position:
               chr10:41407936-41408443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               338
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               64, 21
               

               Conread position:
               110-586
               

               Cow position:
               chr10:62353164-62353645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 111
               

               Conread position:
               118-501
               

               Cow position:
               chr10:39227863-39228242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 99
               

               Conread position:
               120-559
               

               Cow position:
               chr10:31027931-31027480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 13
               

               Conread position:
               121-559
               

               Cow position:
               chr10:52296207-52296657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 37
               

               Conread position:
               127-493
               

               Cow position:
               chr10:8934202-8934559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               251
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               300, 115
               

               Conread position:
               127-577
               

               Cow position:
               chr10:23056363-23055909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 36
               

               Conread position:
               131-572
               

               Cow position:
               chr10:20552906-20553353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 38
               

               Conread position:
               131-586
               

               Cow position:
               chr10:14946986-14947443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               319
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               190, 64
               

               Conread position:
               140-555
               

               Cow position:
               chr10:35246215-35245796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               196, 181
               

               Conread position:
               156-571
               

               Cow position:
               chr10:37668416-37668006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               291
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               164, 30
               

               Conread position:
               157-499
               

               Cow position:
               chr10:29251907-29252256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 276
               

               Conread position:
               163-554
               

               Cow position:
               chr10:35868250-35867861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               336, 103
               

               Conread position:
               177-578
               

               Cow position:
               chr10:28840718-28841132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               144, 77
               

               Conread position:
               185-541
               

               Cow position:
               chr10:6665773-6665423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               66, 137
               

               Conread position:
               189-501
               

               Cow position:
               chr10:7816885-7817202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               133, 38
               

               Conread position:
               230-570
               

               Cow position:
               chr10:52695914-52695555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               91, 192
               

               Conread position:
               256-559
               

               Cow position:
               chr10:19191617-19191914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               51, 66
               

               Conread position:
               259-572
               

               Cow position:
               chr10:6384379-6384699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 124
               

               Conread position:
               266-558
               

               Cow position:
               chr10:61922288-61921983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 38
               

               Conread position:
               300-578
               

               Cow position:
               chr10:61510056-61509767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 193
               

               Conread position:
               331-559
               

               Cow position:
               chr10:60697701-60697468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               349-575
               

               Cow position:
               chr10:17149820-17150049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               9, 121
               

               Conread position:
               370-572
               

               Cow position:
               chr10:443546-443746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               1-444
               

               Cow position:
               chr11:6154007-6154451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 37
               

               Conread position:
               1-497
               

               Cow position:
               chr11:69118888-69119390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 309
               

               Conread position:
               1-506
               

               Cow position:
               chr11:62151286-62150788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 34
               

               Conread position:
               1-555
               

               Cow position:
               chr11:35579846-35580426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               1-559
               

               Cow position:
               chr11:13061627-13061085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 110
               

               Conread position:
               1-575
               

               Cow position:
               chr11:50153223-50152626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 9
               

               Conread position:
               1-576
               

               Cow position:
               chr11:1625626-1625036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               2-430
               

               Cow position:
               chr11:10213963-10213535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 123
               

               Conread position:
               3-351
               

               Cow position:
               chr11:84774711-84775050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               123, 157
               

               Conread position:
               3-414
               

               Cow position:
               chr11:59702078-59702499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 91
               

               Conread position:
               3-422
               

               Cow position:
               chr11:16251662-16251223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 254
               

               Conread position:
               3-586
               

               Cow position:
               chr11:52297629-52297029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 111
               

               Conread position:
               11-390
               

               Cow position:
               chr11:46329102-46329483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 67
               

               Conread position:
               11-424
               

               Cow position:
               chr11:50197842-50197410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 26
               

               Conread position:
               11-561
               

               Cow position:
               chr11:32198543-32199114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 72
               

               Conread position:
               16-402
               

               Cow position:
               chr11:47586739-47586349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 9
               

               Conread position:
               20-586
               

               Cow position:
               chr11:37974538-37975116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               33-576
               

               Cow position:
               chr11:62490058-62490608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 40
               

               Conread position:
               107-559
               

               Cow position:
               chr11:85723402-85723863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 125
               

               Conread position:
               109-402
               

               Cow position:
               chr11:62016568-62016280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 50
               

               Conread position:
               117-586
               

               Cow position:
               chr11:74316417-74316901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 41
               

               Conread position:
               118-421
               

               Cow position:
               chr11:24601678-24601984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 233
               

               Conread position:
               128-537
               

               Cow position:
               chr11:45646869-45646446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 36
               

               Conread position:
               130-396
               

               Cow position:
               chr11:83323300-83323558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               191, 39
               

               Conread position:
               130-450
               

               Cow position:
               chr11:18244218-18243890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               146, 293
               

               Conread position:
               131-415
               

               Cow position:
               chr11:15632831-15632540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               185, 32
               

               Conread position:
               131-559
               

               Cow position:
               chr11:17036827-17036363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 35
               

               Conread position:
               133-450
               

               Cow position:
               chr11:30912265-30911952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               271, 26
               

               Conread position:
               133-451
               

               Cow position:
               chr11:11232728-11232403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               234
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               26, 86
               

               Conread position:
               135-554
               

               Cow position:
               chr11:62663504-62663078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               285
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               106, 214
               

               Conread position:
               142-454
               

               Cow position:
               chr11:47544863-47545187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               142-555
               

               Cow position:
               chr11:34120929-34121360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 183
               

               Conread position:
               155-577
               

               Cow position:
               chr11:20238421-20238863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               172-541
               

               Cow position:
               chr11:11469868-11469502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               149, 55
               

               Conread position:
               172-559
               

               Cow position:
               chr11:62620150-62620545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               173, 55
               

               Conread position:
               175-552
               

               Cow position:
               chr11:21728499-21728126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               167, 50
               

               Conread position:
               190-576
               

               Cow position:
               chr11:11557952-11558357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               276
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               131, 42
               

               Conread position:
               234-541
               

               Cow position:
               chr11:30830791-30830467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               244-576
               

               Cow position:
               chr11:80556055-80556404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               76, 141
               

               Conread position:
               246-559
               

               Cow position:
               chr11:80756947-80756621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               215
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               29, 231
               

               Conread position:
               250-535
               

               Cow position:
               chr11:2576063-2575763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               257-568
               

               Cow position:
               chr11:18851766-18852081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 90
               

               Conread position:
               259-574
               

               Cow position:
               chr11:45434936-45435259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               349-574
               

               Cow position:
               chr11:18447544-18447316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 146
               

               Conread position:
               386-559
               

               Cow position:
               chr11:63478362-63478531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-559
               

               Cow position:
               chr12:11056465-11057013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 103
               

               Conread position:
               1-578
               

               Cow position:
               chr12:17031178-17031774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 228
               

               Conread position:
               2-432
               

               Cow position:
               chr12:39486007-39486434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 9
               

               Conread position:
               3-572
               

               Cow position:
               chr12:30170236-30170812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 257
               

               Conread position:
               4-547
               

               Cow position:
               chr12:37770446-37771001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 255
               

               Conread position:
               11-430
               

               Cow position:
               chr12:18421344-18420914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 150
               

               Conread position:
               11-447
               

               Cow position:
               chr12:5632292-5631854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 219
               

               Conread position:
               11-560
               

               Cow position:
               chr12:15089073-15089664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 466
               

               Conread position:
               11-586
               

               Cow position:
               chr12:18123270-18123840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 16
               

               Conread position:
               50-585
               

               Cow position:
               chr12:25560992-25561539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 94
               

               Conread position:
               62-583
               

               Cow position:
               chr12:17881505-17882026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 122
               

               Conread position:
               67-574
               

               Cow position:
               chr12:18577486-18577989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 10
               

               Conread position:
               71-393
               

               Cow position:
               chr12:27987220-27987543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 98
               

               Conread position:
               111-577
               

               Cow position:
               chr12:30745398-30745882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 117
               

               Conread position:
               117-514
               

               Cow position:
               chr12:45820666-45820273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               279
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               221, 75
               

               Conread position:
               120-577
               

               Cow position:
               chr12:18518365-18518837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 97
               

               Conread position:
               128-397
               

               Cow position:
               chr12:26317161-26317440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 88
               

               Conread position:
               130-577
               

               Cow position:
               chr12:20777225-20776764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 29
               

               Conread position:
               142-397
               

               Cow position:
               chr12:18388566-18388315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               221, 85
               

               Conread position:
               155-421
               

               Cow position:
               chr12:8710560-8710820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               166, 72
               

               Conread position:
               156-501
               

               Cow position:
               chr12:25177864-25177518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               35, 100
               

               Conread position:
               172-454
               

               Cow position:
               chr12:15240978-15240703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               251, 55
               

               Conread position:
               182-506
               

               Cow position:
               chr12:29770817-29770494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               139, 43
               

               Conread position:
               186-382
               

               Cow position:
               chr12:4809065-4809263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               135, 107
               

               Conread position:
               191-540
               

               Cow position:
               chr12:45965494-45965137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               9, 133
               

               Conread position:
               195-421
               

               Cow position:
               chr12:38454687-38454908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               151, 22
               

               Conread position:
               211-555
               

               Cow position:
               chr12:33851140-33851499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               106, 216
               

               Conread position:
               269-561
               

               Cow position:
               chr12:37170104-37169800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               52, 85
               

               Conread position:
               349-572
               

               Cow position:
               chr12:12232810-12233041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               92, 144
               

               Conread position:
               1-397
               

               Cow position:
               chr13:12682166-12682574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-561
               

               Cow position:
               chr13:971521-972098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 243
               

               Conread position:
               1-576
               

               Cow position:
               chr13:34282055-34281465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 92
               

               Conread position:
               1-579
               

               Cow position:
               chr13:17820888-17821477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               2-546
               

               Cow position:
               chr13:52057912-52057372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 217
               

               Conread position:
               3-546
               

               Cow position:
               chr13:56686804-56686255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 221
               

               Conread position:
               3-559
               

               Cow position:
               chr13:41807139-41806577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 78
               

               Conread position:
               3-572
               

               Cow position:
               chr13:22085386-22085944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 156
               

               Conread position:
               4-559
               

               Cow position:
               chr13:9974694-9975267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 485
               

               Conread position:
               5-397
               

               Cow position:
               chr13:25434757-25435151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 226
               

               Conread position:
               11-391
               

               Cow position:
               chr13:17158499-17158898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               11-541
               

               Cow position:
               chr13:20666023-20666567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 157
               

               Conread position:
               11-559
               

               Cow position:
               chr13:21235327-21235867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 43
               

               Conread position:
               13-479
               

               Cow position:
               chr13:13261378-13260890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               13-561
               

               Cow position:
               chr13:13321139-13320596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 22
               

               Conread position:
               13-572
               

               Cow position:
               chr13:61976602-61977170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 159
               

               Conread position:
               18-586
               

               Cow position:
               chr13:152301-151743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 134
               

               Conread position:
               34-400
               

               Cow position:
               chr13:889842-890202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 98
               

               Conread position:
               37-317
               

               Cow position:
               chr13:32017184-32017466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 125
               

               Conread position:
               38-576
               

               Cow position:
               chr13:46525104-46525645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 7
               

               Conread position:
               41-456
               

               Cow position:
               chr13:19138772-19138350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 202
               

               Conread position:
               58-578
               

               Cow position:
               chr13:17291816-17292346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 100
               

               Conread position:
               61-572
               

               Cow position:
               chr13:13089337-13088820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 9
               

               Conread position:
               68-579
               

               Cow position:
               chr13:15234214-15233726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 36
               

               Conread position:
               76-555
               

               Cow position:
               chr13:25817813-25817334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 147
               

               Conread position:
               97-555
               

               Cow position:
               chr13:18852351-18851893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 19
               

               Conread position:
               110-578
               

               Cow position:
               chr13:54702453-54701963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 63
               

               Conread position:
               117-451
               

               Cow position:
               chr13:45022952-45023294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               117-559
               

               Cow position:
               chr13:20784844-20784395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 126
               

               Conread position:
               120-415
               

               Cow position:
               chr13:52922341-52922049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 84
               

               Conread position:
               121-421
               

               Cow position:
               chr13:30693953-30693662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               241, 108
               

               Conread position:
               121-542
               

               Cow position:
               chr13:23479281-23478846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 94
               

               Conread position:
               121-585
               

               Cow position:
               chr13:14063276-14063745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 45
               

               Conread position:
               128-559
               

               Cow position:
               chr13:20880681-20881120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               128-573
               

               Cow position:
               chr13:21241847-21242289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 97
               

               Conread position:
               129-572
               

               Cow position:
               chr13:17021476-17021938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 271
               

               Conread position:
               130-500
               

               Cow position:
               chr13:20705960-20706337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 29
               

               Conread position:
               131-561
               

               Cow position:
               chr13:17114138-17114582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 58
               

               Conread position:
               135-400
               

               Cow position:
               chr13:6060770-6061039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               186, 23
               

               Conread position:
               137-452
               

               Cow position:
               chr13:55315953-55316277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               184, 80
               

               Conread position:
               141-570
               

               Cow position:
               chr13:24369817-24369375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 420
               

               Conread position:
               144-586
               

               Cow position:
               chr13:43480290-43479835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 121
               

               Conread position:
               146-500
               

               Cow position:
               chr13:17439539-17439900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               175, 344
               

               Conread position:
               159-447
               

               Cow position:
               chr13:37818541-37818832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               9, 38
               

               Conread position:
               167-430
               

               Cow position:
               chr13:15528822-15529095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               172-559
               

               Cow position:
               chr13:48598105-48597710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               106, 65
               

               Conread position:
               206-578
               

               Cow position:
               chr13:20473520-20473893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               140, 77
               

               Conread position:
               212-586
               

               Cow position:
               chr13:54583042-54582648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               228-501
               

               Cow position:
               chr13:18696991-18696708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               80, 49
               

               Conread position:
               229-543
               

               Cow position:
               chr13:54388873-54389204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               92, 30
               

               Conread position:
               230-572
               

               Cow position:
               chr13:5671445-5671798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               91, 41
               

               Conread position:
               231-577
               

               Cow position:
               chr13:8374626-8374978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               90, 261
               

               Conread position:
               232-421
               

               Cow position:
               chr13:17966064-17966260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               232-586
               

               Cow position:
               chr13:18058104-18058473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               88, 23
               

               Conread position:
               247-559
               

               Cow position:
               chr13:58763502-58763808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               74, 47
               

               Conread position:
               256-564
               

               Cow position:
               chr13:20288451-20288134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               258-558
               

               Cow position:
               chr13:15194613-15194919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               64, 241
               

               Conread position:
               338-559
               

               Cow position:
               chr13:56535488-56535268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 70
               

               Conread position:
               342-574
               

               Cow position:
               chr13:35557083-35557325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 128
               

               Conread position:
               343-559
               

               Cow position:
               chr13:20217372-20217597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               1-507
               

               Cow position:
               chr14:27591516-27592038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 233
               

               Conread position:
               1-559
               

               Cow position:
               chr14:49824207-49824756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 9
               

               Conread position:
               1-572
               

               Cow position:
               chr14:36167368-36166784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 224
               

               Conread position:
               1-575
               

               Cow position:
               chr14:22989467-22988876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 236
               

               Conread position:
               3-560
               

               Cow position:
               chr14:21357993-21357413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 75
               

               Conread position:
               4-482
               

               Cow position:
               chr14:26432820-26433301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 80
               

               Conread position:
               4-555
               

               Cow position:
               chr14:41749342-41749895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 60
               

               Conread position:
               11-500
               

               Cow position:
               chr14:26441915-26442415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 279
               

               Conread position:
               11-559
               

               Cow position:
               chr14:41211292-41210721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 507
               

               Conread position:
               27-397
               

               Cow position:
               chr14:5366279-5365910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               96, 157
               

               Conread position:
               37-559
               

               Cow position:
               chr14:42154565-42155110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 52
               

               Conread position:
               51-578
               

               Cow position:
               chr14:33247043-33247582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 184
               

               Conread position:
               71-559
               

               Cow position:
               chr14:39769860-39770364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 98
               

               Conread position:
               93-586
               

               Cow position:
               chr14:18345393-18345894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 80
               

               Conread position:
               105-551
               

               Cow position:
               chr14:1645863-1646319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 40
               

               Conread position:
               110-559
               

               Cow position:
               chr14:8848569-8848135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               297
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               327, 192
               

               Conread position:
               111-428
               

               Cow position:
               chr14:40433241-40432923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               210, 73
               

               Conread position:
               111-586
               

               Cow position:
               chr14:109178-109650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               326
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               126, 47
               

               Conread position:
               117-558
               

               Cow position:
               chr14:23713000-23712553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               204, 110
               

               Conread position:
               117-559
               

               Cow position:
               chr14:33714374-33714817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 108
               

               Conread position:
               125-558
               

               Cow position:
               chr14:33791495-33791051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 243
               

               Conread position:
               132-415
               

               Cow position:
               chr14:37131957-37131664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               152-501
               

               Cow position:
               chr14:29632604-29632956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               169, 232
               

               Conread position:
               153-462
               

               Cow position:
               chr14:24796145-24796472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               164-505
               

               Cow position:
               chr14:19372610-19372259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 74
               

               Conread position:
               167-578
               

               Cow position:
               chr14:13846250-13845828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               287
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               154, 70
               

               Conread position:
               188-555
               

               Cow position:
               chr14:16760642-16760260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               152, 133
               

               Conread position:
               190-572
               

               Cow position:
               chr14:20110479-20110878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               257
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               201-579
               

               Cow position:
               chr14:20826702-20826326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               222, 40
               

               Conread position:
               223-586
               

               Cow position:
               chr14:16256977-16256604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               101, 280
               

               Conread position:
               235-559
               

               Cow position:
               chr14:36254508-36254832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               197, 91
               

               Conread position:
               1-397
               

               Cow position:
               chr15:23703245-23702855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 104
               

               Conread position:
               1-456
               

               Cow position:
               chr15:23567647-23568113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 95
               

               Conread position:
               1-555
               

               Cow position:
               chr15:26078891-26079438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 212
               

               Conread position:
               3-431
               

               Cow position:
               chr15:23531201-23530761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 159
               

               Conread position:
               3-572
               

               Cow position:
               chr15:6226720-6227285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 160
               

               Conread position:
               4-559
               

               Cow position:
               chr15:24968263-24967705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 170
               

               Conread position:
               11-454
               

               Cow position:
               chr15:363482-363041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 27
               

               Conread position:
               11-572
               

               Cow position:
               chr15:6906021-6905430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               25-430
               

               Cow position:
               chr15:47042171-47042586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 5
               

               Conread position:
               33-559
               

               Cow position:
               chr15:16543017-16543534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 187
               

               Conread position:
               51-454
               

               Cow position:
               chr15:17869865-17870268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 156
               

               Conread position:
               69-454
               

               Cow position:
               chr15:13515780-13515382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 103
               

               Conread position:
               71-397
               

               Cow position:
               chr15:23486764-23487092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 134
               

               Conread position:
               104-500
               

               Cow position:
               chr15:16307792-16307393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 220
               

               Conread position:
               117-578
               

               Cow position:
               chr15:16823296-16822835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               314
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               82, 41
               

               Conread position:
               121-559
               

               Cow position:
               chr15:24994172-24994607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 24
               

               Conread position:
               131-397
               

               Cow position:
               chr15:5730283-5730017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               190, 86
               

               Conread position:
               131-559
               

               Cow position:
               chr15:22553178-22553637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               304
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               110, 205
               

               Conread position:
               133-395
               

               Cow position:
               chr15:6586369-6586639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               186, 200
               

               Conread position:
               150-578
               

               Cow position:
               chr15:12304968-12304524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 77
               

               Conread position:
               167-572
               

               Cow position:
               chr15:47843797-47844197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               279
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               159, 136
               

               Conread position:
               174-577
               

               Cow position:
               chr15:1722548-1722955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               152, 17
               

               Conread position:
               175-461
               

               Cow position:
               chr15:24305176-24305472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               146, 102
               

               Conread position:
               182-558
               

               Cow position:
               chr15:23696622-23696997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               139, 43
               

               Conread position:
               187-553
               

               Cow position:
               chr15:33643376-33643001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               134, 38
               

               Conread position:
               190-559
               

               Cow position:
               chr15:41125280-41125653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               250
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               130, 289
               

               Conread position:
               195-559
               

               Cow position:
               chr15:25907195-25906822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               30, 159
               

               Conread position:
               196-430
               

               Cow position:
               chr15:38877022-38877261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               144, 90
               

               Conread position:
               256-582
               

               Cow position:
               chr15:53716657-53716315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               341-578
               

               Cow position:
               chr15:14988123-14987879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               15, 90
               

               Conread position:
               1-363
               

               Cow position:
               chr16:49141948-49141591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 220
               

               Conread position:
               1-421
               

               Cow position:
               chr16:24147768-24148198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 157
               

               Conread position:
               1-451
               

               Cow position:
               chr16:33226921-33226468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 82
               

               Conread position:
               1-506
               

               Cow position:
               chr16:25170003-25170518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 159
               

               Conread position:
               1-507
               

               Cow position:
               chr16:40561836-40562356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 497
               

               Conread position:
               1-559
               

               Cow position:
               chr16:51598992-51598427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 160
               

               Conread position:
               1-572
               

               Cow position:
               chr16:13989596-13990165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 21
               

               Conread position:
               1-572
               

               Cow position:
               chr16:33704416-33705000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 123
               

               Conread position:
               1-578
               

               Cow position:
               chr16:45139278-45139868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 162
               

               Conread position:
               1-585
               

               Cow position:
               chr16:49126573-49125979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 155
               

               Conread position:
               2-576
               

               Cow position:
               chr16:56231433-56232015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 371
               

               Conread position:
               2-577
               

               Cow position:
               chr16:48398632-48398053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 157
               

               Conread position:
               2-578
               

               Cow position:
               chr16:40333710-40333130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 145
               

               Conread position:
               3-454
               

               Cow position:
               chr16:48370334-48369878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 148
               

               Conread position:
               5-559
               

               Cow position:
               chr16:38709206-38708650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 115
               

               Conread position:
               7-421
               

               Cow position:
               chr16:52789683-52790093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               333, 19
               

               Conread position:
               38-559
               

               Cow position:
               chr16:48096115-48095583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 62
               

               Conread position:
               46-554
               

               Cow position:
               chr16:7504755-7505260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 115
               

               Conread position:
               49-584
               

               Cow position:
               chr16:935804-935243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               370
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               46, 260
               

               Conread position:
               62-566
               

               Cow position:
               chr16:23730265-23729725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 105
               

               Conread position:
               64-576
               

               Cow position:
               chr16:48956479-48957002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 97
               

               Conread position:
               95-575
               

               Cow position:
               chr16:13689368-13689865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 11
               

               Conread position:
               111-559
               

               Cow position:
               chr16:14106366-14106830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 110
               

               Conread position:
               127-559
               

               Cow position:
               chr16:45813953-45813512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               163, 17
               

               Conread position:
               129-397
               

               Cow position:
               chr16:12488880-12489149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               58, 45
               

               Conread position:
               129-401
               

               Cow position:
               chr16:39417368-39417102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               192, 28
               

               Conread position:
               130-430
               

               Cow position:
               chr16:42777705-42778011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 173
               

               Conread position:
               132-558
               

               Cow position:
               chr16:50873430-50873004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               132-586
               

               Cow position:
               chr16:26649889-26649424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 26
               

               Conread position:
               133-559
               

               Cow position:
               chr16:238006-238452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 347
               

               Conread position:
               141-499
               

               Cow position:
               chr16:50282678-50282315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 76
               

               Conread position:
               141-507
               

               Cow position:
               chr16:11806435-11806799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               180, 17
               

               Conread position:
               141-558
               

               Cow position:
               chr16:25839364-25839796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 60
               

               Conread position:
               148-397
               

               Cow position:
               chr16:35168485-35168744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               173, 0
               

               Conread position:
               156-559
               

               Cow position:
               chr16:10552918-10552505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               86, 94
               

               Conread position:
               171-395
               

               Cow position:
               chr16:54679450-54679681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               37, 32
               

               Conread position:
               171-558
               

               Cow position:
               chr16:45677069-45676689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               150, 54
               

               Conread position:
               187-559
               

               Cow position:
               chr16:45677774-45678163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               53, 108
               

               Conread position:
               197-572
               

               Cow position:
               chr16:46433514-46433125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               124, 28
               

               Conread position:
               222-572
               

               Cow position:
               chr16:31079266-31078904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               87, 22
               

               Conread position:
               285-577
               

               Cow position:
               chr16:40514587-40514289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               23, 16
               

               Conread position:
               325-578
               

               Cow position:
               chr16:20824420-20824682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               109, 20
               

               Conread position:
               1-335
               

               Cow position:
               chr17:27667543-27667201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-451
               

               Cow position:
               chr17:18592088-18592553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 326
               

               Conread position:
               1-542
               

               Cow position:
               chr17:5767552-5768108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 45
               

               Conread position:
               1-559
               

               Cow position:
               chr17:36331311-36330741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 84
               

               Conread position:
               1-585
               

               Cow position:
               chr17:29083856-29084420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 170
               

               Conread position:
               1-586
               

               Cow position:
               chr17:15103228-15102636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 34
               

               Conread position:
               3-319
               

               Cow position:
               chr17:30539596-30539284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 222
               

               Conread position:
               3-449
               

               Cow position:
               chr17:21336044-21335583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 81
               

               Conread position:
               3-454
               

               Cow position:
               chr17:24553658-24554110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 36
               

               Conread position:
               3-506
               

               Cow position:
               chr17:29157085-29157580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 24
               

               Conread position:
               11-561
               

               Cow position:
               chr17:20022856-20022286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 217
               

               Conread position:
               14-585
               

               Cow position:
               chr17:24823928-24824499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 131
               

               Conread position:
               18-577
               

               Cow position:
               chr17:11216212-11215649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 202
               

               Conread position:
               37-558
               

               Cow position:
               chr17:25900886-25901433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 125
               

               Conread position:
               41-546
               

               Cow position:
               chr17:30529845-30529337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 157
               

               Conread position:
               52-559
               

               Cow position:
               chr17:28285317-28284810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 34
               

               Conread position:
               89-558
               

               Cow position:
               chr17:21115206-21114730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 123
               

               Conread position:
               110-421
               

               Cow position:
               chr17:11664825-11664507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 54
               

               Conread position:
               117-555
               

               Cow position:
               chr17:5423301-5422856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 41
               

               Conread position:
               121-558
               

               Cow position:
               chr17:24587392-24587848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 235
               

               Conread position:
               121-578
               

               Cow position:
               chr17:24787247-24786780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 156
               

               Conread position:
               123-578
               

               Cow position:
               chr17:7810963-7810502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               101, 178
               

               Conread position:
               128-577
               

               Cow position:
               chr17:25128568-25128110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 59
               

               Conread position:
               129-586
               

               Cow position:
               chr17:32419336-32418865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 147
               

               Conread position:
               131-562
               

               Cow position:
               chr17:7436950-7437400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               299
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               28, 65
               

               Conread position:
               133-559
               

               Cow position:
               chr17:32472005-32471562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 26
               

               Conread position:
               134-450
               

               Cow position:
               chr17:4225704-4225390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               187, 105
               

               Conread position:
               138-456
               

               Cow position:
               chr17:38646859-38647177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               238
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               183, 28
               

               Conread position:
               144-420
               

               Cow position:
               chr17:12447601-12447324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               177, 33
               

               Conread position:
               157-559
               

               Cow position:
               chr17:12536658-12536248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               280
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               164, 68
               

               Conread position:
               159-572
               

               Cow position:
               chr17:25611905-25612326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               287
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               162, 73
               

               Conread position:
               163-577
               

               Cow position:
               chr17:908562-908983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 69
               

               Conread position:
               165-559
               

               Cow position:
               chr17:3577356-3577753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 133
               

               Conread position:
               173-555
               

               Cow position:
               chr17:3467595-3467973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               236, 49
               

               Conread position:
               193-552
               

               Cow position:
               chr17:31037534-31037157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               128, 39
               

               Conread position:
               200-562
               

               Cow position:
               chr17:6328961-6329341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               92, 283
               

               Conread position:
               216-500
               

               Cow position:
               chr17:40673251-40673528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               70, 107
               

               Conread position:
               222-586
               

               Cow position:
               chr17:6318986-6318614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               117, 78
               

               Conread position:
               226-461
               

               Cow position:
               chr17:6848680-6848915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               36, 112
               

               Conread position:
               256-555
               

               Cow position:
               chr17:11912592-11912283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               99, 81
               

               Conread position:
               258-572
               

               Cow position:
               chr17:40250333-40250649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 25
               

               Conread position:
               288-586
               

               Cow position:
               chr17:34791129-34790812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               291-576
               

               Cow position:
               chr17:21039502-21039800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               305-559
               

               Cow position:
               chr17:5372571-5372306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               308-555
               

               Cow position:
               chr17:25800925-25800662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               13, 167
               

               Conread position:
               343-575
               

               Cow position:
               chr17:29995437-29995193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               1-421
               

               Cow position:
               chr18:30248550-30248132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 169
               

               Conread position:
               1-494
               

               Cow position:
               chr18:30794033-30794506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 100
               

               Conread position:
               1-502
               

               Cow position:
               chr18:12241849-12242361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               347
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               19, 55
               

               Conread position:
               1-555
               

               Cow position:
               chr18:9974747-9974182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               1-555
               

               Cow position:
               chr18:44262193-44262771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 168
               

               Conread position:
               1-558
               

               Cow position:
               chr18:11779244-11779804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 37
               

               Conread position:
               1-559
               

               Cow position:
               chr18:29648367-29648932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 161
               

               Conread position:
               1-575
               

               Cow position:
               chr18:22790489-22789922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               433, 20
               

               Conread position:
               3-432
               

               Cow position:
               chr18:6103522-6103082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 67
               

               Conread position:
               3-491
               

               Cow position:
               chr18:45570608-45571089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 28
               

               Conread position:
               3-500
               

               Cow position:
               chr18:37002215-37002716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 70
               

               Conread position:
               3-585
               

               Cow position:
               chr18:26938567-26939150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               11-577
               

               Cow position:
               chr18:12118257-12117683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 279
               

               Conread position:
               12-559
               

               Cow position:
               chr18:20125895-20126444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 145
               

               Conread position:
               13-457
               

               Cow position:
               chr18:5486842-5487285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 15
               

               Conread position:
               22-572
               

               Cow position:
               chr18:45904292-45903730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 53
               

               Conread position:
               24-561
               

               Cow position:
               chr18:55505005-55505557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 145
               

               Conread position:
               27-541
               

               Cow position:
               chr18:47511598-47512133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 188
               

               Conread position:
               49-559
               

               Cow position:
               chr18:11790558-11791070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               333
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               73, 138
               

               Conread position:
               51-561
               

               Cow position:
               chr18:10575740-10576257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 115
               

               Conread position:
               78-397
               

               Cow position:
               chr18:13632296-13631972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               18, 23
               

               Conread position:
               84-559
               

               Cow position:
               chr18:9365576-9366074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               106-559
               

               Cow position:
               chr18:4884832-4884367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 100
               

               Conread position:
               121-553
               

               Cow position:
               chr18:54572595-54572142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               155, 88
               

               Conread position:
               123-514
               

               Cow position:
               chr18:28924129-28923747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 56
               

               Conread position:
               128-558
               

               Cow position:
               chr18:15614136-15613713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               305
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               193, 16
               

               Conread position:
               129-555
               

               Cow position:
               chr18:10904555-10904995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               298
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               28, 75
               

               Conread position:
               131-559
               

               Cow position:
               chr18:31082609-31082191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               303, 50
               

               Conread position:
               134-514
               

               Cow position:
               chr18:36230997-36230629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               206, 67
               

               Conread position:
               139-577
               

               Cow position:
               chr18:11691691-11691236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 18
               

               Conread position:
               147-577
               

               Cow position:
               chr18:12058744-12059164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               275
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               185, 77
               

               Conread position:
               159-561
               

               Cow position:
               chr18:42432348-42431938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               292
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               162, 19
               

               Conread position:
               163-586
               

               Cow position:
               chr18:12023890-12023459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               155, 62
               

               Conread position:
               173-559
               

               Cow position:
               chr18:48713306-48713694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               148, 47
               

               Conread position:
               177-397
               

               Cow position:
               chr18:33007813-33008043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               187-586
               

               Cow position:
               chr18:10977444-10977031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               272
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               153, 130
               

               Conread position:
               273-576
               

               Cow position:
               chr18:1571388-1571071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               48, 138
               

               Conread position:
               296-577
               

               Cow position:
               chr18:23630728-23630443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               38, 47
               

               Conread position:
               1-397
               

               Cow position:
               chr19:38392398-38392807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 76
               

               Conread position:
               1-493
               

               Cow position:
               chr19:20671305-20670805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 349
               

               Conread position:
               1-506
               

               Cow position:
               chr19:35018646-35018133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 159
               

               Conread position:
               1-530
               

               Cow position:
               chr19:15068394-15067866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 197
               

               Conread position:
               1-555
               

               Cow position:
               chr19:34956097-34955543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 20
               

               Conread position:
               3-421
               

               Cow position:
               chr19:39056846-39057268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 205
               

               Conread position:
               3-454
               

               Cow position:
               chr19:36721936-36722371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 155
               

               Conread position:
               4-500
               

               Cow position:
               chr19:17795496-17796002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 62
               

               Conread position:
               11-558
               

               Cow position:
               chr19:20661808-20661239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 179
               

               Conread position:
               11-559
               

               Cow position:
               chr19:16096945-16096379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 232
               

               Conread position:
               19-577
               

               Cow position:
               chr19:41945830-41946373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 9
               

               Conread position:
               23-417
               

               Cow position:
               chr19:20693105-20693522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               54-572
               

               Cow position:
               chr19:46454502-46455028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               66-577
               

               Cow position:
               chr19:26057883-26057359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 94
               

               Conread position:
               80-577
               

               Cow position:
               chr19:7668382-7668887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 37
               

               Conread position:
               88-561
               

               Cow position:
               chr19:39104320-39103837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               323
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               36, 77
               

               Conread position:
               99-397
               

               Cow position:
               chr19:35741854-35742164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 182
               

               Conread position:
               121-546
               

               Cow position:
               chr19:27612445-27612017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 37
               

               Conread position:
               132-559
               

               Cow position:
               chr19:10186233-10186681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               299
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               92, 79
               

               Conread position:
               132-586
               

               Cow position:
               chr19:1968571-1968120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 95
               

               Conread position:
               138-413
               

               Cow position:
               chr19:6049922-6049655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               182, 67
               

               Conread position:
               139-572
               

               Cow position:
               chr19:3621168-3621616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 84
               

               Conread position:
               152-559
               

               Cow position:
               chr19:43413534-43413953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               172, 99
               

               Conread position:
               155-554
               

               Cow position:
               chr19:56094296-56094699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               268
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               146, 57
               

               Conread position:
               173-461
               

               Cow position:
               chr19:22134371-22134083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               102, 54
               

               Conread position:
               175-507
               

               Cow position:
               chr19:51231044-51230711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               146, 37
               

               Conread position:
               176-559
               

               Cow position:
               chr19:33903645-33903252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               145, 40
               

               Conread position:
               180-559
               

               Cow position:
               chr19:16621574-16621184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               183-578
               

               Cow position:
               chr19:17972475-17972076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               22, 45
               

               Conread position:
               184-577
               

               Cow position:
               chr19:22043558-22043164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               137, 11
               

               Conread position:
               188-555
               

               Cow position:
               chr19:48960179-48960563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               205-479
               

               Cow position:
               chr19:25628326-25628049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               205-572
               

               Cow position:
               chr19:24760078-24759700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               115, 7
               

               Conread position:
               233-541
               

               Cow position:
               chr19:15719787-15719469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               88, 24
               

               Conread position:
               236-586
               

               Cow position:
               chr19:35107362-35107718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               84, 43
               

               Conread position:
               256-586
               

               Cow position:
               chr19:15852801-15853128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               248, 65
               

               Conread position:
               273-578
               

               Cow position:
               chr19:23378557-23378870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               47, 85
               

               Conread position:
               325-577
               

               Cow position:
               chr19:28810384-28810124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               101, 17
               

               Conread position:
               341-575
               

               Cow position:
               chr19:42768153-42767913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               343-576
               

               Cow position:
               chr19:33988015-33988260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 154
               

               Conread position:
               343-577
               

               Cow position:
               chr19:33575473-33575711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 15
               

               Conread position:
               354-559
               

               Cow position:
               chr19:23756783-23756577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               76, 139
               

               Conread position:
               1-430
               

               Cow position:
               chr2:11805930-11806366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 168
               

               Conread position:
               1-479
               

               Cow position:
               chr2:64532957-64533431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               1-555
               

               Cow position:
               chr2:77157742-77157165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 28
               

               Conread position:
               1-571
               

               Cow position:
               chr2:45575385-45574811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 238
               

               Conread position:
               1-576
               

               Cow position:
               chr2:53649649-53650218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 44
               

               Conread position:
               2-558
               

               Cow position:
               chr2:19493816-19494399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 235
               

               Conread position:
               3-547
               

               Cow position:
               chr2:42255049-42255604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 65
               

               Conread position:
               3-561
               

               Cow position:
               chr2:44170172-44170745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 68
               

               Conread position:
               3-577
               

               Cow position:
               chr2:44065204-44065768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 159
               

               Conread position:
               3-577
               

               Cow position:
               chr2:45499578-45498998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 34
               

               Conread position:
               11-560
               

               Cow position:
               chr2:61096531-61097083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               345
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               310, 45
               

               Conread position:
               12-561
               

               Cow position:
               chr2:15674168-15674717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 150
               

               Conread position:
               15-586
               

               Cow position:
               chr2:58074723-58074133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 22
               

               Conread position:
               17-577
               

               Cow position:
               chr2:13001442-13002000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 91
               

               Conread position:
               23-335
               

               Cow position:
               chr2:818210-818532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               93, 151
               

               Conread position:
               38-456
               

               Cow position:
               chr2:80325199-80324771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 122
               

               Conread position:
               39-577
               

               Cow position:
               chr2:7534132-7533577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 277
               

               Conread position:
               62-579
               

               Cow position:
               chr2:38965293-38965816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 127
               

               Conread position:
               86-577
               

               Cow position:
               chr2:9062966-9063472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 200
               

               Conread position:
               97-559
               

               Cow position:
               chr2:15568478-15568019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 139
               

               Conread position:
               117-500
               

               Cow position:
               chr2:42927721-42927333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 340
               

               Conread position:
               119-572
               

               Cow position:
               chr2:33554428-33553978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 109
               

               Conread position:
               120-572
               

               Cow position:
               chr2:45619662-45619198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 123
               

               Conread position:
               121-584
               

               Cow position:
               chr2:46189356-46188886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 38
               

               Conread position:
               121-586
               

               Cow position:
               chr2:41248302-41248777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 63
               

               Conread position:
               124-479
               

               Cow position:
               chr2:39489519-39489873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               15, 121
               

               Conread position:
               127-430
               

               Cow position:
               chr2:4223525-4223221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               159, 32
               

               Conread position:
               129-553
               

               Cow position:
               chr2:82957417-82957861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               299
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               147, 29
               

               Conread position:
               129-576
               

               Cow position:
               chr2:13684448-13684894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 29
               

               Conread position:
               131-430
               

               Cow position:
               chr2:1755781-1756088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               109, 38
               

               Conread position:
               131-572
               

               Cow position:
               chr2:84480776-84480301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               132-477
               

               Cow position:
               chr2:21002932-21003271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               176, 33
               

               Conread position:
               132-577
               

               Cow position:
               chr2:75600457-75600914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               133-420
               

               Cow position:
               chr2:45665779-45666070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               188, 32
               

               Conread position:
               133-506
               

               Cow position:
               chr2:19287331-19286957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 91
               

               Conread position:
               135-421
               

               Cow position:
               chr2:43578049-43577759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               186, 92
               

               Conread position:
               139-500
               

               Cow position:
               chr2:53851185-53851554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 19
               

               Conread position:
               149-561
               

               Cow position:
               chr2:11599202-11599609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 92
               

               Conread position:
               150-555
               

               Cow position:
               chr2:15249946-15250349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               171, 92
               

               Conread position:
               152-544
               

               Cow position:
               chr2:15329167-15329544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               169, 73
               

               Conread position:
               154-500
               

               Cow position:
               chr2:72183723-72183373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               158, 60
               

               Conread position:
               154-579
               

               Cow position:
               chr2:77212414-77211978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 398
               

               Conread position:
               155-397
               

               Cow position:
               chr2:68716901-68716654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               166, 81
               

               Conread position:
               155-576
               

               Cow position:
               chr2:46033099-46033536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               298
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               166, 35
               
156-559UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr2:44229921-44229519 (view  custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               119, 80
               
159-477UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr2:46375158-46374846 (view  custom track)

               
               
               
Alignm length: 320

               
               
               
Alignm identity: 209

               
               
               
Alignm E-value: 4e-31

               
               
               
Alignm gaps (pig, cow): 182, 91
165-586UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr2:38362594-38362163 (view  custom track)

               
               
               
Alignm length: 442

               
               
               
Alignm identity: 307

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 139, 130

               
               
               Conread position:177-578
               
               
               Cow position:chr2:44051093-44051513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:183-581
               
               
               Cow position:chr2:46120841-46120435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:193-579
               
               
               Cow position:chr2:827805-827413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:193-586
               
               
               Cow position:chr2:29121692-29122097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:197-559
               
               
               Cow position:chr2:60315537-60315166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):124, 60

               
               
               Conread position:198-555
               
               
               Cow position:chr2:1762600-1762972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):60, 365

               
               
               Conread position:206-559
               
               
               Cow position:chr2:19328365-19328717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:207-397
               
               
               Cow position:chr2:21078395-21078596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:217-498
               
               
               Cow position:chr2:30144552-30144831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:245-568
               
               
               Cow position:chr2:59819949-59819617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:247-565
               
               
               Cow position:chr2:45542539-45542210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 226

               
               
               Conread position:283-559
               
               
               Cow position:chr2:60091536-60091250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:326-578
               
               
               Cow position:chr2:50449968-50449705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:343-567
               
               
               Cow position:chr2:69350605-69350374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:343-586
               
               
               Cow position:chr2:46161917-46162165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 183

               
               
               Conread position:1-430
               
               
               Cow position:chr20:19363708-19363273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:1-454
               
               
               Cow position:chr20:33363167-33363634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 229

               
               
               Conread position:1-559
               
               
               Cow position:chr20:28604868-28605434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 52

               
               
               Conread position:1-559
               
               
               Cow position:chr20:40176906-40177472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:1-586
               
               
               Cow position:chr20:8577901-8578508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:1-586
               
               
               Cow position:chr20:28982355-28982953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 113

               
               
               Conread position:3-559
               
               
               Cow position:chr20:38817671-38818217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 129

               
               
               Conread position:4-561
               
               
               Cow position:chr20:13269283-13269844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:16-454
               
               
               Cow position:chr20:31740544-31740103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 156

               
               
               Conread position:16-501
               
               
               Cow position:chr20:9412164-9412649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 150

               
               
               Conread position:45-577
               
               
               Cow position:chr20:39398177-39398729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 125

               
               
               Conread position:47-559
               
               
               Cow position:chr20:13751945-13752441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 84

               
               
               Conread position:56-559
               
               
               Cow position:chr20:7426481-7425970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:65-559
               
               
               Cow position:chr20:12582231-12581728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 156

               
               
               Conread position:83-575
               
               
               Cow position:chr20:8703174-8702686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:343
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:87-572
               
               
               Cow position:chr20:22064812-22065302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:97-504
               
               
               Cow position:chr20:3607202-3606794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:98-577
               
               
               Cow position:chr20:22235062-22235546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:107-398
               
               
               Cow position:chr20:39517772-39518064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:118-462
               
               
               Cow position:chr20:15549124-15548772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 99

               
               
               Conread position:119-575
               
               
               Cow position:chr20:10208578-10209051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 38

               
               
               Conread position:120-397
               
               
               Cow position:chr20:39019471-39019752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):200, 38

               
               
               Conread position:121-421
               
               
               Cow position:chr20:23505605-23505908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 37

               
               
               Conread position:121-554
               
               
               Cow position:chr20:12420845-12420396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 116

               
               
               Conread position:126-500
               
               
               Cow position:chr20:38768672-38768301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 104

               
               
               Conread position:147-572
               
               
               Cow position:chr20:8556472-8556029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 236

               
               
               Conread position:151-585
               
               
               Cow position:chr20:27408069-27407639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):166, 18

               
               
               Conread position:152-572
               
               
               Cow position:chr20:32084277-32083858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):169, 25

               
               
               Conread position:172-532
               
               
               Cow position:chr20:16935476-16935115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 183

               
               
               Conread position:175-576
               
               
               Cow position:chr20:3254878-3255279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:190-397
               
               
               Cow position:chr20:5636325-5636537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:190-559
               
               
               Cow position:chr20:8307858-8308232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):113, 284

               
               
               Conread position:196-559
               
               
               Cow position:chr20:28441177-28441547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):125, 113

               
               
               Conread position:198-559
               
               
               Cow position:chr20:4334667-4334310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:230-532
               
               
               Cow position:chr20:32463640-32463324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):91, 183

               
               
               Conread position:249-577
               
               
               Cow position:chr20:18379282-18379623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:256-572
               
               
               Cow position:chr20:7738319-7737993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-444
               
               
               Cow position:chr21:44514940-44515391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:1-498
               
               
               Cow position:chr21:33209873-33210369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 343

               
               
               Conread position:1-555
               
               
               Cow position:chr21:29214481-29213913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 235

               
               
               Conread position:1-555
               
               
               Cow position:chr21:38120777-38121324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 242

               
               
               Conread position:1-574
               
               
               Cow position:chr21:29069654-29069059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 228

               
               
               Conread position:1-577
               
               
               Cow position:chr21:33983136-33982547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 281

               
               
               Conread position:2-572
               
               
               Cow position:chr21:11645310-11644704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 272

               
               
               Conread position:3-454
               
               
               Cow position:chr21:42540544-42540085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:3-576
               
               
               Cow position:chr21:641263-641850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:3-576
               
               
               Cow position:chr21:643013-643590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 144

               
               
               Conread position:3-577
               
               
               Cow position:chr21:19196492-19195893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 469

               
               
               Conread position:4-451
               
               
               Cow position:chr21:725212-724751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:11-536
               
               
               Cow position:chr21:31691165-31691699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 114

               
               
               Conread position:11-576
               
               
               Cow position:chr21:23586547-23587139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:12-572
               
               
               Cow position:chr21:7672818-7673375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 150

               
               
               Conread position:13-545
               
               
               Cow position:chr21:19614863-19615407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:15-367
               
               
               Cow position:chr21:48108165-48107820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 43

               
               
               Conread position:18-576
               
               
               Cow position:chr21:11740439-11739854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:27-397
               
               
               Cow position:chr21:12961213-12960821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:117-500
               
               
               Cow position:chr21:29484777-29485159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 41

               
               
               Conread position:120-559
               
               
               Cow position:chr21:22860798-22861241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 38

               
               
               Conread position:121-558
               
               
               Cow position:chr21:24598456-24598891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:128-401
               
               
               Cow position:chr21:35569580-35569303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:132-430
               
               
               Cow position:chr21:10601560-10601265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):206, 26

               
               
               Conread position:133-578
               
               
               Cow position:chr21:32559545-32559102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:136-561
               
               
               Cow position:chr21:47465309-47464868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):174, 73

               
               
               Conread position:143-576
               
               
               Cow position:chr21:802475-802055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 74

               
               
               Conread position:159-572
               
               
               Cow position:chr21:48234323-48233914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:178-397
               
               
               Cow position:chr21:18041989-18041770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:186-426
               
               
               Cow position:chr21:11359899-11360142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):140, 69

               
               
               Conread position:205-572
               
               
               Cow position:chr21:30222222-30222604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:257-499
               
               
               Cow position:chr21:45262883-45262628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:355-586
               
               
               Cow position:chr21:16498554-16498792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:1-397
               
               
               Cow position:chr22:13950787-13951190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:1-415
               
               
               Cow position:chr22:18021409-18021004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:1-450
               
               
               Cow position:chr22:14882504-14882050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 234

               
               
               Conread position:1-498
               
               
               Cow position:chr22:21296116-21295610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 159

               
               
               Conread position:1-500
               
               
               Cow position:chr22:21502344-21502858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:1-553
               
               
               Cow position:chr22:2403495-2404056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 93

               
               
               Conread position:1-555
               
               
               Cow position:chr22:864913-864352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 229

               
               
               Conread position:1-559
               
               
               Cow position:chr22:10532103-10532675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 167

               
               
               Conread position:1-559
               
               
               Cow position:chr22:28071164-28071740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 110

               
               
               Conread position:1-572
               
               
               Cow position:chr22:10121996-10122563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 238

               
               
               Conread position:1-577
               
               
               Cow position:chr22:1289900-1289328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 124

               
               
               Conread position:1-577
               
               
               Cow position:chr22:11613035-11613626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 161

               
               
               Conread position:1-578
               
               
               Cow position:chr22:41971546-41970956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 165

               
               
               Conread position:1-586
               
               
               Cow position:chr22:18258834-18259425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 228

               
               
               Conread position:1-586
               
               
               Cow position:chr22:39508425-39507831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:2-541
               
               
               Cow position:chr22:25743359-25742799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 259

               
               
               Conread position:2-555
               
               
               Cow position:chr22:34442038-34441454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 183

               
               
               Conread position:3-397
               
               
               Cow position:chr22:8876880-8877275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 316

               
               
               Conread position:3-461
               
               
               Cow position:chr22:8323861-8324316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:3-506
               
               
               Cow position:chr22:4119959-4119442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 225

               
               
               Conread position:3-559
               
               
               Cow position:chr22:4356716-4357265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:3-578
               
               
               Cow position:chr22:10568075-10567516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 137

               
               
               Conread position:3-578
               
               
               Cow position:chr22:44717330-44717921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 19

               
               
               Conread position:3-579
               
               
               Cow position:chr22:38439543-38438956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 69

               
               
               Conread position:8-541
               
               
               Cow position:chr22:10937217-10936682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:10-559
               
               
               Cow position:chr22:17152296-17152870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:11-461
               
               
               Cow position:chr22:11258121-11257671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 222

               
               
               Conread position:12-578
               
               
               Cow position:chr22:27171637-27171068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:13-397
               
               
               Cow position:chr22:36569923-36569541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 207

               
               
               Conread position:13-426
               
               
               Cow position:chr22:33901455-33901045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:17-499
               
               
               Cow position:chr22:14245788-14245336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:17-575
               
               
               Cow position:chr22:38940325-38939754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 212

               
               
               Conread position:28-577
               
               
               Cow position:chr22:41983070-41982521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 83

               
               
               Conread position:29-577
               
               
               Cow position:chr22:17950317-17949776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:31-572
               
               
               Cow position:chr22:6610712-6610163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:59-572
               
               
               Cow position:chr22:30698845-30699360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:64-553
               
               
               Cow position:chr22:43397689-43398175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:66-572
               
               
               Cow position:chr22:33485932-33485430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:69-447
               
               
               Cow position:chr22:17764050-17764442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 163

               
               
               Conread position:98-442
               
               
               Cow position:chr22:3993314-3993668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:101-448
               
               
               Cow position:chr22:15032138-15031791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:105-400
               
               
               Cow position:chr22:766569-766276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:114-400
               
               
               Cow position:chr22:27550082-27550370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):162, 9

               
               
               Conread position:121-454
               
               
               Cow position:chr22:845633-845973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):179, 37

               
               
               Conread position:121-577
               
               
               Cow position:chr22:15568289-15567819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:123-479
               
               
               Cow position:chr22:15090472-15090837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 109

               
               
               Conread position:127-422
               
               
               Cow position:chr22:14186302-14186605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:128-577
               
               
               Cow position:chr22:17852885-17852435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 30

               
               
               Conread position:133-397
               
               
               Cow position:chr22:10829168-10828891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:136-390
               
               
               Cow position:chr22:24732800-24732549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):145, 10

               
               
               Conread position:143-555
               
               
               Cow position:chr22:25222149-25221725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 15

               
               
               Conread position:145-555
               
               
               Cow position:chr22:36433212-36432793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):195, 7

               
               
               Conread position:145-576
               
               
               Cow position:chr22:7882303-7882752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 159

               
               
               Conread position:146-319
               
               
               Cow position:chr22:37554873-37554698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:152-397
               
               
               Cow position:chr22:43812657-43812413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):146, 58

               
               
               Conread position:160-554
               
               
               Cow position:chr22:5016277-5016667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):125, 175

               
               
               Conread position:165-506
               
               
               Cow position:chr22:43119955-43119609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):159, 60

               
               
               Conread position:167-576
               
               
               Cow position:chr22:5616075-5616497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 199

               
               
               Conread position:186-429
               
               
               Cow position:chr22:5675377-5675138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 39

               
               
               Conread position:198-559
               
               
               Cow position:chr22:12803578-12803206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:230-559
               
               
               Cow position:chr22:45807675-45808011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 157

               
               
               Conread position:372-578
               
               
               Cow position:chr22:16813783-16813996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:1-385
               
               
               Cow position:chr23:1428414-1428809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:1-451
               
               
               Cow position:chr23:20744977-20744520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 228

               
               
               Conread position:1-496
               
               
               Cow position:chr23:1721390-1720865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 240

               
               
               Conread position:1-499
               
               
               Cow position:chr23:9268201-9268700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 161

               
               
               Conread position:1-541
               
               
               Cow position:chr23:7844901-7845461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 93

               
               
               Conread position:1-578
               
               
               Cow position:chr23:39049798-39049233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:381
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:1-585
               
               
               Cow position:chr23:8698058-8698639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 142

               
               
               Conread position:3-558
               
               
               Cow position:chr23:2502249-2501670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:11-416
               
               
               Cow position:chr23:29441378-29440969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 338

               
               
               Conread position:14-586
               
               
               Cow position:chr23:533857-534440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 145

               
               
               Conread position:15-559
               
               
               Cow position:chr23:16246370-16246925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 170

               
               
               Conread position:50-572
               
               
               Cow position:chr23:39778077-39778599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 153

               
               
               Conread position:52-559
               
               
               Cow position:chr23:39752777-39753290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 366

               
               
               Conread position:83-449
               
               
               Cow position:chr23:3247285-3247659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):238, 134

               
               
               Conread position:88-559
               
               
               Cow position:chr23:1883092-1883581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:117-415
               
               
               Cow position:chr23:16664819-16664536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):195, 69

               
               
               Conread position:117-444
               
               
               Cow position:chr23:11045215-11045550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):203, 97

               
               
               Conread position:120-555
               
               
               Cow position:chr23:29346025-29345593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):223, 38

               
               
               Conread position:121-460
               
               
               Cow position:chr23:17404587-17404921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:121-577
               
               
               Cow position:chr23:16881422-16880964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 75

               
               
               Conread position:131-501
               
               
               Cow position:chr23:11315272-11314913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):226, 89

               
               
               Conread position:143-506
               
               
               Cow position:chr23:5706756-5707119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:172-554
               
               
               Cow position:chr23:18902265-18901883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 255

               
               
               Conread position:174-522
               
               
               Cow position:chr23:21764705-21765067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):147, 69

               
               
               Conread position:177-572
               
               
               Cow position:chr23:1776840-1776452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 45

               
               
               Conread position:181-586
               
               
               Cow position:chr23:4646308-4646722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):140, 122

               
               
               Conread position:184-553
               
               
               Cow position:chr23:20248902-20248512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 281

               
               
               Conread position:190-577
               
               
               Cow position:chr23:5426231-5426643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:220-572
               
               
               Cow position:chr23:1583361-1583718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 150

               
               
               Conread position:247-585
               
               
               Cow position:chr23:12363761-12363405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:257-572
               
               
               Cow position:chr23:5732417-5732737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:260-586
               
               
               Cow position:chr23:18286068-18286399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:266-572
               
               
               Cow position:chr23:1438173-1438479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:303-557
               
               
               Cow position:chr23:17486913-17486641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:320-571
               
               
               Cow position:chr23:22586822-22587078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:344-578
               
               
               Cow position:chr23:24966500-24966255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 225

               
               
               Conread position:1-559
               
               
               Cow position:chr24:35675145-35675692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 121

               
               
               Conread position:1-572
               
               
               Cow position:chr24:211567-212144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 482

               
               
               Conread position:1-578
               
               
               Cow position:chr24:28303764-28303182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 170

               
               
               Conread position:1-583
               
               
               Cow position:chr24:15247039-15246470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:3-397
               
               
               Cow position:chr24:202045-201648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 171

               
               
               Conread position:3-572
               
               
               Cow position:chr24:27844932-27844359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 232

               
               
               Conread position:12-558
               
               
               Cow position:chr24:44869599-44870155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:359
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):91, 149

               
               
               Conread position:17-559
               
               
               Cow position:chr24:30235480-30236033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:18-549
               
               
               Cow position:chr24:16870183-16869631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 232

               
               
               Conread position:25-577
               
               
               Cow position:chr24:2402767-2402198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 151

               
               
               Conread position:27-577
               
               
               Cow position:chr24:42102981-42103541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:39-558
               
               
               Cow position:chr24:39483100-39483623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:44-544
               
               
               Cow position:chr24:20874309-20874826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 53

               
               
               Conread position:48-584
               
               
               Cow position:chr24:39850244-39849706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:52-554
               
               
               Cow position:chr24:24491373-24490869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:62-560
               
               
               Cow position:chr24:15057038-15057546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:91-559
               
               
               Cow position:chr24:26929273-26928780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:121-395
               
               
               Cow position:chr24:27941299-27941026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):200, 74

               
               
               Conread position:131-561
               
               
               Cow position:chr24:1269523-1269940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):372, 89

               
               
               Conread position:135-555
               
               
               Cow position:chr24:30314313-30313872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 347

               
               
               Conread position:152-577
               
               
               Cow position:chr24:27608358-27607932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:166-456
               
               
               Cow position:chr24:43927568-43927282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):142, 70

               
               
               Conread position:186-572
               
               
               Cow position:chr24:22689812-22689399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:193-420
               
               
               Cow position:chr24:39833735-39833503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:223-586
               
               
               Cow position:chr24:28233860-28234228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:232-586
               
               
               Cow position:chr24:19800662-19801027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 211

               
               
               Conread position:239-575
               
               
               Cow position:chr24:18357230-18356875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:244-555
               
               
               Cow position:chr24:37037727-37038048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:284-559
               
               
               Cow position:chr24:27713536-27713249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:289-559
               
               
               Cow position:chr24:29561701-29561418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 132

               
               
               Conread position:315-586
               
               
               Cow position:chr24:37823429-37823715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:348-555
               
               
               Cow position:chr24:5360659-5360868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr25:35339943-35340359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 224

               
               
               Conread position:1-501
               
               
               Cow position:chr25:27531657-27531155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:1-559
               
               
               Cow position:chr25:4522209-4521658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 159

               
               
               Conread position:1-559
               
               
               Cow position:chr25:8120385-8120964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 160

               
               
               Conread position:1-576
               
               
               Cow position:chr25:22314809-22315404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 233

               
               
               Conread position:2-555
               
               
               Cow position:chr25:21193334-21192762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 159

               
               
               Conread position:3-572
               
               
               Cow position:chr25:7641838-7641259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:11-421
               
               
               Cow position:chr25:5341269-5341688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:11-500
               
               
               Cow position:chr25:22530907-22531396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:11-555
               
               
               Cow position:chr25:7216440-7216996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 233

               
               
               Conread position:62-486
               
               
               Cow position:chr25:36037121-36036676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 180

               
               
               Conread position:91-559
               
               
               Cow position:chr25:16319428-16318967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 44

               
               
               Conread position:112-577
               
               
               Cow position:chr25:33457429-33457931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:128-582
               
               
               Cow position:chr25:33550244-33550717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 39

               
               
               Conread position:130-559
               
               
               Cow position:chr25:14512856-14513289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):191, 28

               
               
               Conread position:133-387
               
               
               Cow position:chr25:15412027-15411767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:137-559
               
               
               Cow position:chr25:10156338-10156736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):209, 107

               
               
               Conread position:138-576
               
               
               Cow position:chr25:24669682-24669252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):183, 20

               
               
               Conread position:153-562
               
               
               Cow position:chr25:23913152-23913574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:174-555
               
               
               Cow position:chr25:2624588-2624973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 198

               
               
               Conread position:195-577
               
               
               Cow position:chr25:15410106-15409721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:197-577
               
               
               Cow position:chr25:32453591-32453231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:230-562
               
               
               Cow position:chr25:23245173-23244818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:259-555
               
               
               Cow position:chr25:19364193-19363881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:259-576
               
               
               Cow position:chr25:12510144-12509821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 235

               
               
               Conread position:277-559
               
               
               Cow position:chr25:11433070-11432769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:362-559
               
               
               Cow position:chr25:36873357-36873154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-568
               
               
               Cow position:chr26:26888506-26887927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 289

               
               
               Conread position:1-575
               
               
               Cow position:chr26:12145478-12144899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:3-541
               
               
               Cow position:chr26:32670865-32670315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 154

               
               
               Conread position:30-586
               
               
               Cow position:chr26:20292026-20291464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 198

               
               
               Conread position:108-586
               
               
               Cow position:chr26:35704122-35704607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 365

               
               
               Conread position:119-559
               
               
               Cow position:chr26:32898123-32897678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 108

               
               
               Conread position:125-559
               
               
               Cow position:chr26:13801865-13802310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 148

               
               
               Conread position:130-393
               
               
               Cow position:chr26:24280588-24280850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):186, 97

               
               
               Conread position:131-561
               
               
               Cow position:chr26:8810892-8811334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):190, 96

               
               
               Conread position:141-421
               
               
               Cow position:chr26:5306902-5307197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:150-577
               
               
               Cow position:chr26:21637258-21636832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:178-561
               
               
               Cow position:chr26:22892633-22892244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:185-454
               
               
               Cow position:chr26:14175095-14175372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:188-546
               
               
               Cow position:chr26:25995863-25995490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:205-555
               
               
               Cow position:chr26:22249648-22249292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 182

               
               
               Conread position:229-559
               
               
               Cow position:chr26:20769709-20770052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:233-572
               
               
               Cow position:chr26:9535376-9535728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 229

               
               
               Conread position:341-561
               
               
               Cow position:chr26:34611206-34610983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:345-579
               
               
               Cow position:chr26:23924828-23925065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-506
               
               
               Cow position:chr27:4673361-4672845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 117

               
               
               Conread position:1-562
               
               
               Cow position:chr27:299037-299606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 296

               
               
               Conread position:1-577
               
               
               Cow position:chr27:19388363-19387774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 358

               
               
               Conread position:1-578
               
               
               Cow position:chr27:17397108-17397699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:1-586
               
               
               Cow position:chr27:15454557-15453956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:3-559
               
               
               Cow position:chr27:16787177-16786602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 331

               
               
               Conread position:3-559
               
               
               Cow position:chr27:23452817-23452234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 8

               
               
               Conread position:3-578
               
               
               Cow position:chr27:14670037-14670628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 160

               
               
               Conread position:6-577
               
               
               Cow position:chr27:28207133-28206557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:11-400
               
               
               Cow position:chr27:6523391-6522984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):65, 248

               
               
               Conread position:11-448
               
               
               Cow position:chr27:13409830-13410273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:11-559
               
               
               Cow position:chr27:26984673-26984125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 10

               
               
               Conread position:11-578
               
               
               Cow position:chr27:20828371-20828952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 191

               
               
               Conread position:13-572
               
               
               Cow position:chr27:22171633-22171060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:75-571
               
               
               Cow position:chr27:21668853-21669353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:76-447
               
               
               Cow position:chr27:23483496-23483117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:79-559
               
               
               Cow position:chr27:7412651-7412165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 219

               
               
               Conread position:111-572
               
               
               Cow position:chr27:30890522-30890059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:129-424
               
               
               Cow position:chr27:30551211-30550912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):193, 98

               
               
               Conread position:139-572
               
               
               Cow position:chr27:19685509-19685954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 88

               
               
               Conread position:140-323
               
               
               Cow position:chr27:19546300-19546481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:154-448
               
               
               Cow position:chr27:30988989-30988687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:162-555
               
               
               Cow position:chr27:29431638-29431251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):159, 17

               
               
               Conread position:173-559
               
               
               Cow position:chr27:15408872-15409254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 52

               
               
               Conread position:206-577
               
               
               Cow position:chr27:427111-426723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 219

               
               
               Conread position:209-506
               
               
               Cow position:chr27:16589577-16589869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:231-415
               
               
               Cow position:chr27:20789260-20789454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-466
               
               
               Cow position:chr27:16626010-16625771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:247-536
               
               
               Cow position:chr27:20481276-20481562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:356-572
               
               
               Cow position:chr27:15002994-15003221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1-454
               
               
               Cow position:chr28:8022495-8022025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 203

               
               
               Conread position:1-552
               
               
               Cow position:chr28:11585591-11585026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:1-555
               
               
               Cow position:chr28:16346900-16346352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 124

               
               
               Conread position:1-562
               
               
               Cow position:chr28:3914326-3914898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 161

               
               
               Conread position:3-461
               
               
               Cow position:chr28:26922752-26922283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 84

               
               
               Conread position:3-496
               
               
               Cow position:chr28:7864949-7865449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 155

               
               
               Conread position:3-559
               
               
               Cow position:chr28:25056588-25057146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 227

               
               
               Conread position:11-397
               
               
               Cow position:chr28:10900447-10900835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:11-500
               
               
               Cow position:chr28:11752516-11752015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:13-453
               
               
               Cow position:chr28:30842214-30842646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):263, 97

               
               
               Conread position:23-586
               
               
               Cow position:chr28:16919523-16918953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 232

               
               
               Conread position:33-559
               
               
               Cow position:chr28:8787198-8787729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:41-499
               
               
               Cow position:chr28:2961162-2960709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):280, 46

               
               
               Conread position:44-579
               
               
               Cow position:chr28:5203864-5204395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:112-578
               
               
               Cow position:chr28:29416986-29416516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:120-454
               
               
               Cow position:chr28:2862599-2862946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:121-578
               
               
               Cow position:chr28:26719099-26719539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):235, 57

               
               
               Conread position:127-507
               
               
               Cow position:chr28:19026258-19025876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):194, 82

               
               
               Conread position:130-578
               
               
               Cow position:chr28:3493036-3492578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:131-541
               
               
               Cow position:chr28:22345768-22346197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 51

               
               
               Conread position:138-400
               
               
               Cow position:chr28:8084453-8084725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:139-576
               
               
               Cow position:chr28:11423047-11422612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:146-551
               
               
               Cow position:chr28:34430663-34430241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 321

               
               
               Conread position:157-558
               
               
               Cow position:chr28:4016304-4016712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:179-572
               
               
               Cow position:chr28:4090248-4089856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 48

               
               
               Conread position:185-541
               
               
               Cow position:chr28:4809596-4809947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):249, 110

               
               
               Conread position:193-575
               
               
               Cow position:chr28:30937856-30937472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 128

               
               
               Conread position:222-396
               
               
               Cow position:chr28:29989277-29989102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:232-561
               
               
               Cow position:chr28:24082116-24082462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:271-559
               
               
               Cow position:chr28:25128768-25129074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 223

               
               
               Conread position:325-577
               
               
               Cow position:chr28:4013028-4013291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:343-578
               
               
               Cow position:chr28:3445515-3445271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:1-494
               
               
               Cow position:chr29:4480565-4480062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 162

               
               
               Conread position:1-507
               
               
               Cow position:chr29:36216728-36217234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 159

               
               
               Conread position:1-559
               
               
               Cow position:chr29:36530473-36531050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:3-558
               
               
               Cow position:chr29:17109583-17110136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:3-578
               
               
               Cow position:chr29:26778502-26779079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 125

               
               
               Conread position:14-578
               
               
               Cow position:chr29:26616114-26615538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 234

               
               
               Conread position:18-572
               
               
               Cow position:chr29:40117197-40117762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 92

               
               
               Conread position:18-576
               
               
               Cow position:chr29:40764045-40763495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 127

               
               
               Conread position:36-430
               
               
               Cow position:chr29:29974689-29975082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:37-504
               
               
               Cow position:chr29:5892495-5892964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 121

               
               
               Conread position:81-552
               
               
               Cow position:chr29:10456863-10456403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:104-586
               
               
               Cow position:chr29:39111593-39111114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):217, 99

               
               
               Conread position:110-578
               
               
               Cow position:chr29:5062853-5063346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:121-397
               
               
               Cow position:chr29:2623748-2623468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):243, 200

               
               
               Conread position:121-397
               
               
               Cow position:chr29:21682777-21682506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):161, 44

               
               
               Conread position:121-421
               
               
               Cow position:chr29:5099030-5098731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 129

               
               
               Conread position:128-578
               
               
               Cow position:chr29:22613174-22613625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):193, 35

               
               
               Conread position:133-499
               
               
               Cow position:chr29:8926715-8926347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 140

               
               
               Conread position:151-416
               
               
               Cow position:chr29:22585647-22585371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:152-577
               
               
               Cow position:chr29:4520098-4520536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):169, 75

               
               
               Conread position:153-577
               
               
               Cow position:chr29:34773964-34773547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):168, 52

               
               
               Conread position:190-447
               
               
               Cow position:chr29:9718972-9718708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:190-559
               
               
               Cow position:chr29:25091910-25092288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:193-572
               
               
               Cow position:chr29:26275417-26275798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:205-578
               
               
               Cow position:chr29:41113045-41112687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):221, 25

               
               
               Conread position:337-559
               
               
               Cow position:chr29:44139293-44139061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:1-415
               
               
               Cow position:chr3:49793000-49793403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 160

               
               
               Conread position:1-514
               
               
               Cow position:chr3:70566151-70565630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 227

               
               
               Conread position:1-564
               
               
               Cow position:chr3:23169483-23168902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 404

               
               
               Conread position:1-575
               
               
               Cow position:chr3:50768262-50768856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 164

               
               
               Conread position:1-578
               
               
               Cow position:chr3:75479606-75480179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 26

               
               
               Conread position:2-501
               
               
               Cow position:chr3:16752659-16752165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 153

               
               
               Conread position:3-400
               
               
               Cow position:chr3:49218719-49218322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 159

               
               
               Conread position:3-583
               
               
               Cow position:chr3:45881494-45882085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 236

               
               
               Conread position:3-584
               
               
               Cow position:chr3:49327536-49328120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:4-559
               
               
               Cow position:chr3:7338186-7337626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 7

               
               
               Conread position:4-559
               
               
               Cow position:chr3:61225151-61224588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:11-501
               
               
               Cow position:chr3:55272435-55271951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 58

               
               
               Conread position:17-400
               
               
               Cow position:chr3:48269466-48269857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 295

               
               
               Conread position:30-447
               
               
               Cow position:chr3:10346963-10347393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 213

               
               
               Conread position:32-572
               
               
               Cow position:chr3:53221646-53222186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 71

               
               
               Conread position:34-577
               
               
               Cow position:chr3:13352980-13353545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 138

               
               
               Conread position:49-586
               
               
               Cow position:chr3:53429253-53428730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 165

               
               
               Conread position:50-558
               
               
               Cow position:chr3:55190109-55189590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 23

               
               
               Conread position:58-558
               
               
               Cow position:chr3:53149970-53150493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 168

               
               
               Conread position:61-506
               
               
               Cow position:chr3:83442232-83441795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:72-500
               
               
               Cow position:chr3:80071775-80072223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:80-578
               
               
               Cow position:chr3:78076858-78077370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 241

               
               
               Conread position:86-558
               
               
               Cow position:chr3:2397111-2396635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 247

               
               
               Conread position:110-555
               
               
               Cow position:chr3:59611017-59610562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 52

               
               
               Conread position:118-559
               
               
               Cow position:chr3:74533055-74533495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 177

               
               
               Conread position:120-450
               
               
               Cow position:chr3:56059516-56059856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 97

               
               
               Conread position:120-572
               
               
               Cow position:chr3:9641273-9641729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 101

               
               
               Conread position:120-572
               
               
               Cow position:chr3:68881400-68880957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 53

               
               
               Conread position:121-559
               
               
               Cow position:chr3:68708291-68707861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 52

               
               
               Conread position:124-541
               
               
               Cow position:chr3:71161507-71161933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):152, 119

               
               
               Conread position:125-559
               
               
               Cow position:chr3:39970158-39969702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:126-578
               
               
               Cow position:chr3:52607893-52608357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 268

               
               
               Conread position:127-572
               
               
               Cow position:chr3:23408626-23408190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:130-559
               
               
               Cow position:chr3:17456550-17456106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):146, 197

               
               
               Conread position:133-554
               
               
               Cow position:chr3:68627953-68627531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):213, 87

               
               
               Conread position:136-572
               
               
               Cow position:chr3:7331394-7330964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 206

               
               
               Conread position:149-577
               
               
               Cow position:chr3:75080504-75080932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 169

               
               
               Conread position:160-577
               
               
               Cow position:chr3:44932257-44932692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 297

               
               
               Conread position:161-559
               
               
               Cow position:chr3:78092756-78092350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):186, 24

               
               
               Conread position:162-586
               
               
               Cow position:chr3:63315882-63316316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 300

               
               
               Conread position:163-572
               
               
               Cow position:chr3:43233255-43233677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 315

               
               
               Conread position:171-576
               
               
               Cow position:chr3:12705799-12705369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 260

               
               
               Conread position:176-494
               
               
               Cow position:chr3:17447843-17447526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):170, 56

               
               
               Conread position:184-514
               
               
               Cow position:chr3:15506220-15506560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 182

               
               
               Conread position:187-586
               
               
               Cow position:chr3:74754105-74754503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):155, 30

               
               
               Conread position:197-586
               
               
               Cow position:chr3:60264931-60264533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:201-450
               
               
               Cow position:chr3:27697193-27696933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:209-576
               
               
               Cow position:chr3:54506502-54506884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:230-521
               
               
               Cow position:chr3:20678020-20677726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:237-577
               
               
               Cow position:chr3:36418644-36418307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:252-501
               
               
               Cow position:chr3:53508458-53508705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:258-554
               
               
               Cow position:chr3:19585704-19586020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:297-578
               
               
               Cow position:chr3:59604732-59605022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:340-563
               
               
               Cow position:chr3:18607601-18607828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:343-561
               
               
               Cow position:chr3:75608435-75608651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:1-397
               
               
               Cow position:chr4:19438048-19438471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:1-421
               
               
               Cow position:chr4:24458496-24458073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 162

               
               
               Conread position:1-445
               
               
               Cow position:chr4:19497644-19497208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):438, 216

               
               
               Conread position:1-454
               
               
               Cow position:chr4:65179530-65179083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:1-458
               
               
               Cow position:chr4:24002366-24001895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 197

               
               
               Conread position:1-479
               
               
               Cow position:chr4:65919226-65919699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 36

               
               
               Conread position:1-499
               
               
               Cow position:chr4:53100412-53100912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:1-572
               
               
               Cow position:chr4:4319539-4318964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 146

               
               
               Conread position:2-506
               
               
               Cow position:chr4:33433652-33433142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 157

               
               
               Conread position:3-400
               
               
               Cow position:chr4:36892961-36893368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 0

               
               
               Conread position:3-572
               
               
               Cow position:chr4:68387400-68387978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 155

               
               
               Conread position:4-456
               
               
               Cow position:chr4:20139922-20139449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 166

               
               
               Conread position:11-397
               
               
               Cow position:chr4:12560640-12561035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:11-460
               
               
               Cow position:chr4:38952172-38952625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 150

               
               
               Conread position:11-577
               
               
               Cow position:chr4:1014683-1015266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 233

               
               
               Conread position:11-578
               
               
               Cow position:chr4:61897919-61897356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 124

               
               
               Conread position:37-479
               
               
               Cow position:chr4:17112239-17111783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 192

               
               
               Conread position:46-395
               
               
               Cow position:chr4:22216008-22215649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:51-500
               
               
               Cow position:chr4:44782027-44782484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 169

               
               
               Conread position:58-450
               
               
               Cow position:chr4:46383711-46383308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:59-456
               
               
               Cow position:chr4:47351468-47351871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:62-561
               
               
               Cow position:chr4:48485657-48486175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 271

               
               
               Conread position:63-559
               
               
               Cow position:chr4:275131-275621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:333
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:78-561
               
               
               Cow position:chr4:19597634-19597153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:108-559
               
               
               Cow position:chr4:59785029-59785497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:110-397
               
               
               Cow position:chr4:19582901-19582611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:110-577
               
               
               Cow position:chr4:51727798-51728270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:121-555
               
               
               Cow position:chr4:28772341-28771896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 106

               
               
               Conread position:127-335
               
               
               Cow position:chr4:2141478-2141684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):194, 31

               
               
               Conread position:129-506
               
               
               Cow position:chr4:19699833-19700211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 234

               
               
               Conread position:134-430
               
               
               Cow position:chr4:63096336-63096035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:150-575
               
               
               Cow position:chr4:26659060-26659493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:165-586
               
               
               Cow position:chr4:25356536-25356125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):267, 95

               
               
               Conread position:167-575
               
               
               Cow position:chr4:36290379-36290816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:173-395
               
               
               Cow position:chr4:51083584-51083369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 137

               
               
               Conread position:178-555
               
               
               Cow position:chr4:38935141-38935531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):143, 63

               
               
               Conread position:195-577
               
               
               Cow position:chr4:13344341-13344732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:196-558
               
               
               Cow position:chr4:68805828-68806179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):239, 53

               
               
               Conread position:222-559
               
               
               Cow position:chr4:34022764-34022409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):99, 154

               
               
               Conread position:230-578
               
               
               Cow position:chr4:20147016-20147382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:261-577
               
               
               Cow position:chr4:21874036-21874373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:264-559
               
               
               Cow position:chr4:52832153-52831838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 145

               
               
               Conread position:305-577
               
               
               Cow position:chr4:44903206-44903479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:1-454
               
               
               Cow position:chr5:46510232-46509766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 246

               
               
               Conread position:1-486
               
               
               Cow position:chr5:15598597-15598107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:1-554
               
               
               Cow position:chr5:56523810-56524369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 160

               
               
               Conread position:1-555
               
               
               Cow position:chr5:3582213-3582763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 164

               
               
               Conread position:1-559
               
               
               Cow position:chr5:14314159-14314728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:1-576
               
               
               Cow position:chr5:64321390-64321990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:1-577
               
               
               Cow position:chr5:21617101-21617684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:1-577
               
               
               Cow position:chr5:57935475-57934889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:1-578
               
               
               Cow position:chr5:45846055-45845459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:3-479
               
               
               Cow position:chr5:50821426-50821907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 203

               
               
               Conread position:4-397
               
               
               Cow position:chr5:34915783-34916170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:11-555
               
               
               Cow position:chr5:74644013-74643476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:11-559
               
               
               Cow position:chr5:50599712-50600258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:11-576
               
               
               Cow position:chr5:17087377-17086788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:13-577
               
               
               Cow position:chr5:22737753-22738327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 186

               
               
               Conread position:16-495
               
               
               Cow position:chr5:8821341-8820874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:17-559
               
               
               Cow position:chr5:27154676-27155214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 86

               
               
               Conread position:39-559
               
               
               Cow position:chr5:68718564-68719079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:349
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):167, 70

               
               
               Conread position:51-581
               
               
               Cow position:chr5:65941566-65941014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:58-556
               
               
               Cow position:chr5:65752552-65753069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:99-461
               
               
               Cow position:chr5:64139297-64139666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:117-559
               
               
               Cow position:chr5:40109256-40109696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 92

               
               
               Conread position:119-394
               
               
               Cow position:chr5:67243681-67243957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:120-397
               
               
               Cow position:chr5:43929976-43929696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):199, 107

               
               
               Conread position:124-559
               
               
               Cow position:chr5:30253507-30253952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 34

               
               
               Conread position:128-586
               
               
               Cow position:chr5:24996458-24995980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 50

               
               
               Conread position:131-571
               
               
               Cow position:chr5:64137020-64137482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):149, 112

               
               
               Conread position:133-577
               
               
               Cow position:chr5:56070624-56071089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 34

               
               
               Conread position:137-559
               
               
               Cow position:chr5:64176346-64175918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 202

               
               
               Conread position:145-397
               
               
               Cow position:chr5:60126156-60126412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):176, 76

               
               
               Conread position:167-559
               
               
               Cow position:chr5:44447082-44446663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 347

               
               
               Conread position:167-585
               
               
               Cow position:chr5:34561813-34562249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 376

               
               
               Conread position:178-577
               
               
               Cow position:chr5:46512951-46512538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:184-541
               
               
               Cow position:chr5:44028480-44028111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:196-572
               
               
               Cow position:chr5:30629324-30628928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:206-577
               
               
               Cow position:chr5:42050391-42050774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):127, 114

               
               
               Conread position:209-564
               
               
               Cow position:chr5:12673618-12673263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:215-451
               
               
               Cow position:chr5:63865644-63865891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-579
               
               
               Cow position:chr5:70952020-70951661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):99, 204

               
               
               Conread position:229-577
               
               
               Cow position:chr5:60016029-60016394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:232-430
               
               
               Cow position:chr5:991332-991536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:234-578
               
               
               Cow position:chr5:56877356-56877701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:249-559
               
               
               Cow position:chr5:22666976-22667282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):183, 80

               
               
               Conread position:255-531
               
               
               Cow position:chr5:60183690-60183984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:343-572
               
               
               Cow position:chr5:69099705-69099944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:355-559
               
               
               Cow position:chr5:50824589-50824795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 152

               
               
               Conread position:1-415
               
               
               Cow position:chr6:49411029-49410626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:1-428
               
               
               Cow position:chr6:18961870-18961432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-558
               
               
               Cow position:chr6:32867556-32866997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 229

               
               
               Conread position:1-559
               
               
               Cow position:chr6:11192800-11192255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:1-572
               
               
               Cow position:chr6:46465478-46466055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 240

               
               
               Conread position:2-397
               
               
               Cow position:chr6:24961818-24962196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):338, 67

               
               
               Conread position:2-578
               
               
               Cow position:chr6:52478791-52478169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 609

               
               
               Conread position:3-574
               
               
               Cow position:chr6:10106348-10105743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 576

               
               
               Conread position:4-555
               
               
               Cow position:chr6:65870678-65871252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:31-555
               
               
               Cow position:chr6:13688129-13687595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:40-558
               
               
               Cow position:chr6:32121600-32122119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 188

               
               
               Conread position:55-559
               
               
               Cow position:chr6:61489051-61489545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:331
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:106-559
               
               
               Cow position:chr6:38853903-38853431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 192

               
               
               Conread position:110-547
               
               
               Cow position:chr6:26915092-26915541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 115

               
               
               Conread position:112-479
               
               
               Cow position:chr6:20098203-20097821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:113-559
               
               
               Cow position:chr6:46860403-46859945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:117-421
               
               
               Cow position:chr6:21542089-21542400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):204, 119

               
               
               Conread position:121-559
               
               
               Cow position:chr6:36202601-36203046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 104

               
               
               Conread position:121-562
               
               
               Cow position:chr6:51581486-51581027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 358

               
               
               Conread position:121-575
               
               
               Cow position:chr6:15301044-15300599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 108

               
               
               Conread position:123-486
               
               
               Cow position:chr6:35613634-35613272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):216, 35

               
               
               Conread position:131-406
               
               
               Cow position:chr6:6460325-6460604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 33

               
               
               Conread position:131-559
               
               
               Cow position:chr6:8965873-8966313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 35

               
               
               Conread position:136-387
               
               
               Cow position:chr6:24515405-24515155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):206, 91

               
               
               Conread position:136-577
               
               
               Cow position:chr6:53025010-53024568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:145-494
               
               
               Cow position:chr6:6400745-6401103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:147-572
               
               
               Cow position:chr6:21231335-21231749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):210, 84

               
               
               Conread position:153-558
               
               
               Cow position:chr6:63720004-63720416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:166-586
               
               
               Cow position:chr6:47574723-47575142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 66

               
               
               Conread position:171-426
               
               
               Cow position:chr6:1499461-1499725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):150, 79

               
               
               Conread position:181-479
               
               
               Cow position:chr6:47640604-47640294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):127, 114

               
               
               Conread position:185-506
               
               
               Cow position:chr6:15243088-15243418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 313

               
               
               Conread position:186-430
               
               
               Cow position:chr6:12543095-12542844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:193-454
               
               
               Cow position:chr6:61608352-61608625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:230-501
               
               
               Cow position:chr6:50975936-50976208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):200, 130

               
               
               Conread position:236-514
               
               
               Cow position:chr6:58597620-58597335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 261

               
               
               Conread position:244-586
               
               
               Cow position:chr6:59603315-59602965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 73

               
               
               Conread position:337-555
               
               
               Cow position:chr6:34119361-34119142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:1-397
               
               
               Cow position:chr7:40121102-40121522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 246

               
               
               Conread position:1-496
               
               
               Cow position:chr7:26632158-26631655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:1-496
               
               
               Cow position:chr7:37361544-37362033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:1-531
               
               
               Cow position:chr7:60483771-60483230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 162

               
               
               Conread position:1-553
               
               
               Cow position:chr7:20968084-20968645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 225

               
               
               Conread position:1-555
               
               
               Cow position:chr7:48667078-48667626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 131

               
               
               Conread position:1-555
               
               
               Cow position:chr7:49106543-49105980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 67

               
               
               Conread position:1-558
               
               
               Cow position:chr7:29301099-29300550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 93

               
               
               Conread position:1-558
               
               
               Cow position:chr7:29509625-29510160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 98

               
               
               Conread position:1-559
               
               
               Cow position:chr7:53053739-53053178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 83

               
               
               Conread position:1-572
               
               
               Cow position:chr7:4452254-4452844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 370

               
               
               Conread position:1-572
               
               
               Cow position:chr7:15569699-15570277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:1-575
               
               
               Cow position:chr7:58302293-58301696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 485

               
               
               Conread position:3-420
               
               
               Cow position:chr7:28583903-28584325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:11-392
               
               
               Cow position:chr7:68236661-68237035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 194

               
               
               Conread position:11-562
               
               
               Cow position:chr7:27079302-27079856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 91

               
               
               Conread position:11-575
               
               
               Cow position:chr7:33626936-33626360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 314

               
               
               Conread position:11-586
               
               
               Cow position:chr7:20534544-20535127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:17-559
               
               
               Cow position:chr7:4583067-4582504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 460

               
               
               Conread position:41-561
               
               
               Cow position:chr7:49750819-49751358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 190

               
               
               Conread position:45-541
               
               
               Cow position:chr7:41872389-41871893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:51-396
               
               
               Cow position:chr7:36533735-36534074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:54-430
               
               
               Cow position:chr7:30307455-30307831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 56

               
               
               Conread position:62-501
               
               
               Cow position:chr7:39325459-39325886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:64-559
               
               
               Cow position:chr7:23679877-23679365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 419

               
               
               Conread position:65-577
               
               
               Cow position:chr7:33393031-33393553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:117-559
               
               
               Cow position:chr7:17967349-17966899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:119-575
               
               
               Cow position:chr7:39415678-39416152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 179

               
               
               Conread position:120-578
               
               
               Cow position:chr7:36996152-36996604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 105

               
               
               Conread position:121-559
               
               
               Cow position:chr7:8776974-8777437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):155, 90

               
               
               Conread position:128-557
               
               
               Cow position:chr7:9926-10372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:131-397
               
               
               Cow position:chr7:47697810-47698068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):209, 27

               
               
               Conread position:131-572
               
               
               Cow position:chr7:22793132-22793575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 71

               
               
               Conread position:132-555
               
               
               Cow position:chr7:40406448-40406867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:134-396
               
               
               Cow position:chr7:5913991-5914252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:139-572
               
               
               Cow position:chr7:50066319-50065877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 88

               
               
               Conread position:153-572
               
               
               Cow position:chr7:14174601-14174203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):168, 32

               
               
               Conread position:155-506
               
               
               Cow position:chr7:48714657-48715021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:182-559
               
               
               Cow position:chr7:29479358-29479748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 202

               
               
               Conread position:183-394
               
               
               Cow position:chr7:37394154-37394362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):157, 53

               
               
               Conread position:234-577
               
               
               Cow position:chr7:15559576-15559930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:239-557
               
               
               Cow position:chr7:32945963-32946291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:244-559
               
               
               Cow position:chr7:5199656-5199331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 289

               
               
               Conread position:266-554
               
               
               Cow position:chr7:32260285-32259976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:266-559
               
               
               Cow position:chr7:8658430-8658741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:269-559
               
               
               Cow position:chr7:35300500-35300194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 210

               
               
               Conread position:274-577
               
               
               Cow position:chr7:60732715-60732384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:338-575
               
               
               Cow position:chr7:26871996-26871747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-396
               
               
               Cow position:chr8:31253428-31253836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 233

               
               
               Conread position:1-451
               
               
               Cow position:chr8:24372089-24371635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 95

               
               
               Conread position:1-559
               
               
               Cow position:chr8:55716376-55716947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 285

               
               
               Conread position:1-561
               
               
               Cow position:chr8:58636391-58636929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:2-572
               
               
               Cow position:chr8:33407210-33406646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 118

               
               
               Conread position:3-494
               
               
               Cow position:chr8:28987352-28987823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:3-501
               
               
               Cow position:chr8:4924186-4924699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 422

               
               
               Conread position:3-555
               
               
               Cow position:chr8:10337404-10336851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:4-546
               
               
               Cow position:chr8:32621372-32620799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 31

               
               
               Conread position:4-572
               
               
               Cow position:chr8:59250357-59250933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 42

               
               
               Conread position:11-586
               
               
               Cow position:chr8:1303541-1304130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 76

               
               
               Conread position:14-576
               
               
               Cow position:chr8:10970475-10971048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:16-574
               
               
               Cow position:chr8:10081564-10082097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 213

               
               
               Conread position:22-559
               
               
               Cow position:chr8:48528317-48527768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:117-397
               
               
               Cow position:chr8:57943609-57943324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 42

               
               
               Conread position:119-576
               
               
               Cow position:chr8:42762684-42762222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 14

               
               
               Conread position:121-572
               
               
               Cow position:chr8:20108039-20107585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:122-456
               
               
               Cow position:chr8:39630515-39630858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:123-415
               
               
               Cow position:chr8:6724595-6724295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:128-501
               
               
               Cow position:chr8:42794559-42794193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):180, 41

               
               
               Conread position:129-572
               
               
               Cow position:chr8:37310266-37310723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):153, 96

               
               
               Conread position:130-462
               
               
               Cow position:chr8:3338842-3339171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):196, 39

               
               
               Conread position:133-572
               
               
               Cow position:chr8:35580873-35580429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):188, 29

               
               
               Conread position:136-572
               
               
               Cow position:chr8:55898032-55897610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):204, 51

               
               
               Conread position:150-586
               
               
               Cow position:chr8:54302808-54303235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:154-450
               
               
               Cow position:chr8:8097493-8097187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:155-466
               
               
               Cow position:chr8:16031793-16031483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):166, 12

               
               
               Conread position:172-479
               
               
               Cow position:chr8:6485141-6484822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:175-577
               
               
               Cow position:chr8:15694682-15694263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:179-586
               
               
               Cow position:chr8:8190267-8189834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:182-500
               
               
               Cow position:chr8:39174445-39174114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):138, 318

               
               
               Conread position:182-559
               
               
               Cow position:chr8:23018709-23018320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 215

               
               
               Conread position:217-586
               
               
               Cow position:chr8:40280524-40280910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):120, 109

               
               
               Conread position:227-559
               
               
               Cow position:chr8:19717249-19716920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 94

               
               
               Conread position:232-576
               
               
               Cow position:chr8:55884823-55885186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:277-577
               
               
               Cow position:chr8:31985161-31985472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:325-577
               
               
               Cow position:chr8:60339971-60339714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):17, 148

               
               
               Conread position:1-430
               
               
               Cow position:chr9:23430730-23431163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-572
               
               
               Cow position:chr9:56031916-56032486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:1-578
               
               
               Cow position:chr9:28747106-28747693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 227

               
               
               Conread position:3-390
               
               
               Cow position:chr9:62360812-62361212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-454
               
               
               Cow position:chr9:44831640-44832096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 165

               
               
               Conread position:3-582
               
               
               Cow position:chr9:61023025-61022443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 49

               
               
               Conread position:30-559
               
               
               Cow position:chr9:34957662-34958208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 131

               
               
               Conread position:48-576
               
               
               Cow position:chr9:50606581-50607104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 182

               
               
               Conread position:62-571
               
               
               Cow position:chr9:38793377-38792847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:68-456
               
               
               Cow position:chr9:5218828-5219218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:73-572
               
               
               Cow position:chr9:6397441-6397955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:76-578
               
               
               Cow position:chr9:13169331-13169840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:105-579
               
               
               Cow position:chr9:55256235-55256724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:117-572
               
               
               Cow position:chr9:17871806-17872276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:123-576
               
               
               Cow position:chr9:20091332-20090887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 54

               
               
               Conread position:125-559
               
               
               Cow position:chr9:24887487-24887049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 11

               
               
               Conread position:130-586
               
               
               Cow position:chr9:13670924-13670453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 186

               
               
               Conread position:145-577
               
               
               Cow position:chr9:47869278-47868850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):176, 13

               
               
               Conread position:149-578
               
               
               Cow position:chr9:34287062-34286623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):172, 54

               
               
               Conread position:155-576
               
               
               Cow position:chr9:9573596-9573147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:199-502
               
               
               Cow position:chr9:48628250-48627938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:222-577
               
               
               Cow position:chr9:4340971-4341330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:224-559
               
               
               Cow position:chr9:12910202-12910556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:228-575
               
               
               Cow position:chr9:41728448-41728088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:230-586
               
               
               Cow position:chr9:19555565-19555205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 18

               
               
               Conread position:247-586
               
               
               Cow position:chr9:25557139-25556801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 90

               
               
               Conread position:256-542
               
               
               Cow position:chr9:5263665-5263363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:309-578
               
               
               Cow position:chr9:17840566-17840854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:355-572
               
               
               Cow position:chr9:63361661-63361880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 140

               
               
               Conread position:1-409
               
               
               Cow position:chrX:8899662-8900079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:1-559
               
               
               Cow position:chrX:6543893-6544459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 227

               
               
               Conread position:1-575
               
               
               Cow position:chrX:34376591-34377169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:2-559
               
               
               Cow position:chrX:17794633-17795193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 109

               
               
               Conread position:3-395
               
               
               Cow position:chrX:41526879-41526484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:3-559
               
               
               Cow position:chrX:31949290-31948720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:3-577
               
               
               Cow position:chrX:6413685-6414266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 197

               
               
               Conread position:4-558
               
               
               Cow position:chrX:1616411-1615845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 482

               
               
               Conread position:11-450
               
               
               Cow position:chrX:40481224-40480776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:11-558
               
               
               Cow position:chrX:13177810-13177271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:11-576
               
               
               Cow position:chrX:11655725-11656309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 343

               
               
               Conread position:17-577
               
               
               Cow position:chrX:41122725-41123280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 144

               
               
               Conread position:37-454
               
               
               Cow position:chrX:7508800-7509239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:71-559
               
               
               Cow position:chrX:22482982-22482475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:78-458
               
               
               Cow position:chrX:46723027-46722630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:97-501
               
               
               Cow position:chrX:17725711-17726121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:117-553
               
               
               Cow position:chrX:45448643-45449118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:122-559
               
               
               Cow position:chrX:11939163-11938739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 47

               
               
               Conread position:129-559
               
               
               Cow position:chrX:4768518-4768942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):192, 85

               
               
               Conread position:130-319
               
               
               Cow position:chrX:2648581-2648399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:131-555
               
               
               Cow position:chrX:35542661-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 265

               
               
               Conread position:136-559
               
               
               Cow position:chrX:21642703-21642267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):149, 22

               
               
               Conread position:141-575
               
               
               Cow position:chrX:46073042-46072600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:147-576
               
               
               Cow position:chrX:34411625-34412080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:153-501
               
               
               Cow position:chrX:38852988-38853345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:159-516
               
               
               Cow position:chrX:37781320-37780950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 323

               
               
               Conread position:162-449
               
               
               Cow position:chrX:47301103-47300808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:163-449
               
               
               Cow position:chrX:47303078-47302782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 159

               
               
               Conread position:171-454
               
               
               Cow position:chrX:47362802-47362523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 54

               
               
               Conread position:186-555
               
               
               Cow position:chrX:27145447-27145809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:190-576
               
               
               Cow position:chrX:34792482-34792091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 61

               
               
               Conread position:191-572
               
               
               Cow position:chrX:25208017-25207634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):91, 143

               
               
               Conread position:209-572
               
               
               Cow position:chrX:20584166-20584539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 293

               
               
               Conread position:213-576
               
               
               Cow position:chrX:5118654-5118268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):108, 118

               
               
               Conread position:230-495
               
               
               Cow position:chrX:37986098-37986366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 91

               
               
               Conread position:233-559
               
               
               Cow position:chrX:40685463-40685115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-577
               
               
               Cow position:chrX:43115021-43115383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):29, 187

               
               
               Conread position:251-559
               
               
               Cow position:chrX:42927933-42927616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:263-571
               
               
               Cow position:chrX:34837156-34836846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:273-559
               
               
               Cow position:chrX:1466069-1466377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:283-562
               
               
               Cow position:chrX:41192626-41192906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:333-572
               
               
               Cow position:chrX:16836309-16836068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):175, 24
Conread position:	1-500
Cow position:	chr1:98551338-98551842 (view UCSC Genome Browser custom track)
Alignm length:	515
Alignm identity:	365
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 21
Conread position:	1-572
Cow position:	chr1:81290138-81290708 (view UCSC Genome Browser custom track)
Alignm length:	587
Alignm identity:	420
Alignm E-value:	0
Alignm gaps (pig, cow):	335, 204
Conread position:	1-578
Cow position:	chr1:41696678-41697263 (view UCSC Genome Browser custom track)
Alignm length:	592
Alignm identity:	420
Alignm E-value:	0
Alignm gaps (pig, cow):	121, 139
Conread position:	1-585
Cow position:	chr1:1981494-1980893 (view UCSC Genome Browser custom track)
Alignm length:	612
Alignm identity:	431
Alignm E-value:	0
Alignm gaps (pig, cow):	95, 228
Conread position:	1-586
Cow position:	chr1:81569419-81568811 (view UCSC Genome Browser custom track)
Alignm length:	612
Alignm identity:	430
Alignm E-value:	0
Alignm gaps (pig, cow):	123, 321
Conread position:	2-555
Cow position:	chr1:57576144-57575577 (view UCSC Genome Browser custom track)
Alignm length:	576
Alignm identity:	411
Alignm E-value:	0
Alignm gaps (pig, cow):	117, 144
Conread position:	3-400
Cow position:	chr1:665990-666388 (view UCSC Genome Browser custom track)
Alignm length:	412
Alignm identity:	291
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 69
Conread position:	3-554
Cow position:	chr1:92963009-92963563 (view UCSC Genome Browser custom track)
Alignm length:	577
Alignm identity:	386
Alignm E-value:	0
Alignm gaps (pig, cow):	119, 239
Conread position:	3-578
Cow position:	chr1:82936965-82936395 (view UCSC Genome Browser custom track)
Alignm length:	586
Alignm identity:	411
Alignm E-value:	0
Alignm gaps (pig, cow):	83, 229
Conread position:	4-528
Cow position:	chr1:52039256-52039793 (view UCSC Genome Browser custom track)
Alignm length:	544
Alignm identity:	383
Alignm E-value:	0
Alignm gaps (pig, cow):	8, 158
Conread position:	11-421
Cow position:	chr1:82884758-82884350 (view UCSC Genome Browser custom track)
Alignm length:	418
Alignm identity:	316
Alignm E-value:	0
Alignm gaps (pig, cow):	108, 151
Conread position:	11-497
Cow position:	chr1:3167439-3166953 (view UCSC Genome Browser custom track)
Alignm length:	497
Alignm identity:	345
Alignm E-value:	0
Alignm gaps (pig, cow):	112, 150
Conread position:	11-559
Cow position:	chr1:54207189-54206628 (view UCSC Genome Browser custom track)
Alignm length:	571
Alignm identity:	393
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 87
Conread position:	12-577
Cow position:	chr1:8251-8827 (view UCSC Genome Browser custom track)
Alignm length:	586
Alignm identity:	385
Alignm E-value:	0
Alignm gaps (pig, cow):	110, 69
Conread position:	13-397
Cow position:	chr1:3035360-3034980 (view UCSC Genome Browser custom track)
Alignm length:	389
Alignm identity:	276
Alignm E-value:	0
Alignm gaps (pig, cow):	125, 45
Conread position:	21-555
Cow position:	chr1:62963921-62964455 (view UCSC Genome Browser custom track)
Alignm length:	549
Alignm identity:	387
Alignm E-value:	0
Alignm gaps (pig, cow):	318, 14
Conread position:	37-454
Cow position:	chr1:20204678-20205106 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	85, 205
Conread position:	38-559
Cow position:	chr1:24133397-24132872 (view UCSC Genome Browser custom track)
Alignm length:	540
Alignm identity:	376
Alignm E-value:	0
Alignm gaps (pig, cow):	86, 47
Conread position:	44-562
Cow position:	chr1:101713775-101714310 (view UCSC Genome Browser custom track)
Alignm length:	542
Alignm identity:	368
Alignm E-value:	0
Alignm gaps (pig, cow):	73, 54
Conread position:	66-554
Cow position:	chr1:41056366-41056866 (view UCSC Genome Browser custom track)
Alignm length:	510
Alignm identity:	360
Alignm E-value:	0
Alignm gaps (pig, cow):	56, 126