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Cow genome map

           
Conread name:
           
Pla1-C0001063_I16
        

               
Conread position:
               
72-309
               

               
Cow position:
               
chr10:44827801-44827560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 7
               

               
Conread position:
               
93-477
               

               
Cow position:
               
chr10:32558532-32558141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 225
               

               
Conread position:
               
94-473
               

               
Cow position:
               
chr10:21883964-21883587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
95-415
               

               
Cow position:
               
chr10:19727325-19727646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
98-338
               

               
Cow position:
               
chr10:39075813-39075570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
104-396
               

               
Cow position:
               
chr10:58096843-58097141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 246
               

               
Conread position:
               
109-471
               

               
Cow position:
               
chr10:28982495-28982864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 240
               

               
Conread position:
               
114-384
               

               
Cow position:
               
chr10:34683445-34683181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
48-446
               

               
Cow position:
               
chr11:73462423-73462821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 56
               

               
Conread position:
               
84-500
               

               
Cow position:
               
chr11:45921779-45922203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
86-335
               

               
Cow position:
               
chr11:29061380-29061627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr11:80473442-80473782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
90-237
               

               
Cow position:
               
chr11:52314720-52314867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 103
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr11:38834613-38835007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 334
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr11:28053793-28054203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
95-361
               

               
Cow position:
               
chr11:65980137-65980412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
95-410
               

               
Cow position:
               
chr11:27374676-27374362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
95-433
               

               
Cow position:
               
chr11:54995017-54995359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
108-499
               

               
Cow position:
               
chr11:9302967-9303349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
110-335
               

               
Cow position:
               
chr11:34454695-34454460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 144
               

               
Conread position:
               
48-176
               

               
Cow position:
               
chr12:33541782-33541652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
93-487
               

               
Cow position:
               
chr12:14661518-14661920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 339
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr12:11099331-11098930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
95-414
               

               
Cow position:
               
chr12:12293070-12292749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
167, 95
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr12:485985-485807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
98-310
               

               
Cow position:
               
chr12:14695117-14694899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
99-486
               

               
Cow position:
               
chr12:11871375-11870984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
102-391
               

               
Cow position:
               
chr12:39413055-39412768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
241, 73
               

               
Conread position:
               
90-480
               

               
Cow position:
               
chr13:20062415-20062794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
93-472
               

               
Cow position:
               
chr13:31611417-31611802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr13:3653429-3653846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr13:30304183-30303757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
72, 347
               

               
Conread position:
               
95-401
               

               
Cow position:
               
chr13:27898206-27898515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
95-497
               

               
Cow position:
               
chr13:47277033-47276632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 174
               

               
Conread position:
               
96-396
               

               
Cow position:
               
chr13:17330874-17331184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 198
               

               
Conread position:
               
99-489
               

               
Cow position:
               
chr13:38077128-38077510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
100-404
               

               
Cow position:
               
chr13:8796906-8797215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
104-387
               

               
Cow position:
               
chr13:12633438-12633156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
105-387
               

               
Cow position:
               
chr13:6758853-6758558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 197
               

               
Conread position:
               
54-346
               

               
Cow position:
               
chr14:26090134-26089831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
90-289
               

               
Cow position:
               
chr14:10520729-10520926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
90-421
               

               
Cow position:
               
chr14:9099952-9100292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 174
               

               
Conread position:
               
90-439
               

               
Cow position:
               
chr14:31804832-31804476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
93-349
               

               
Cow position:
               
chr14:13779703-13779439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 193
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr14:22030680-22031012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 237
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr14:190732-190337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr14:5529838-5529438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 343
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr14:17000294-17000711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 337
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr14:37224956-37224539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
95-500
               

               
Cow position:
               
chr14:16883080-16883482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr14:2292201-2291964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
99-450
               

               
Cow position:
               
chr14:20909513-20909157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 252
               

               
Conread position:
               
101-445
               

               
Cow position:
               
chr14:5074723-5074372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
24, 176
               

               
Conread position:
               
111-385
               

               
Cow position:
               
chr14:17609995-17609722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
125-482
               

               
Cow position:
               
chr14:20932005-20932369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
46, 42
               

               
Conread position:
               
90-335
               

               
Cow position:
               
chr15:16595600-16595348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr15:21948482-21948822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 39
               

               
Conread position:
               
90-473
               

               
Cow position:
               
chr15:35752548-35752940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr15:18577479-18577067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 327
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chr15:48284455-48284253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
97-479
               

               
Cow position:
               
chr15:13675263-13674886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
88, 209
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr16:49279860-49279568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
91-373
               

               
Cow position:
               
chr16:49472086-49471797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 155
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr16:23535467-23535860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 194
               

               
Conread position:
               
93-480
               

               
Cow position:
               
chr16:7676034-7676426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 193
               

               
Conread position:
               
98-339
               

               
Cow position:
               
chr16:10797446-10797203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 214
               

               
Conread position:
               
85-401
               

               
Cow position:
               
chr17:12978195-12978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 8
               

               
Conread position:
               
86-464
               

               
Cow position:
               
chr17:6077191-6076826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
90-361
               

               
Cow position:
               
chr17:36891-36613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
95-378
               

               
Cow position:
               
chr17:39453113-39452823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr17:3204518-3204737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
90-501
               

               
Cow position:
               
chr18:207206-207608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 249
               

               
Conread position:
               
90-501
               

               
Cow position:
               
chr18:40479601-40479177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
36, 230
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr18:38343073-38343297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
93-495
               

               
Cow position:
               
chr18:52652114-52651703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 335
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr18:16175411-16175826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
33, 314
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr18:27837105-27837520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
96-283
               

               
Cow position:
               
chr18:29407241-29407434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 176
               

               
Conread position:
               
101-486
               

               
Cow position:
               
chr18:32839026-32838639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 256
               

               
Conread position:
               
103-486
               

               
Cow position:
               
chr18:33142446-33142062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
109-505
               

               
Cow position:
               
chr18:18495849-18496244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
128-478
               

               
Cow position:
               
chr18:21148329-21148682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
148-501
               

               
Cow position:
               
chr18:21096352-21096019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr19:23965496-23965276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
90-420
               

               
Cow position:
               
chr19:5162501-5162829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 165
               

               
Conread position:
               
90-473
               

               
Cow position:
               
chr19:43432352-43431987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr19:9706931-9707337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
110-380
               

               
Cow position:
               
chr19:51673918-51674189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr19:17670987-17670611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 162
               

               
Conread position:
               
28-383
               

               
Cow position:
               
chr20:1743086-1742728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
86-472
               

               
Cow position:
               
chr20:19884645-19884268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
86-500
               

               
Cow position:
               
chr20:2399807-2399388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
90-499
               

               
Cow position:
               
chr20:19050377-19050783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
93-308
               

               
Cow position:
               
chr20:27896880-27897099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr20:39718284-39717875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
94-500
               

               
Cow position:
               
chr20:7089990-7090404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 256
               

               
Conread position:
               
96-500
               

               
Cow position:
               
chr20:18962673-18963061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
130-505
               

               
Cow position:
               
chr20:13792452-13792088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
54-267
               

               
Cow position:
               
chr21:21138804-21138585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
93-322
               

               
Cow position:
               
chr21:30598199-30598428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
93-415
               

               
Cow position:
               
chr21:5018397-5018064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 240
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr21:2882454-2882872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 339
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr21:5839982-5840398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 337
               

               
Conread position:
               
96-325
               

               
Cow position:
               
chr21:45786152-45786389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
96-479
               

               
Cow position:
               
chr21:218305-217942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
96-503
               

               
Cow position:
               
chr21:45301198-45301612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
122-482
               

               
Cow position:
               
chr21:45977206-45977575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
186-403
               

               
Cow position:
               
chr21:28613277-28613058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 153
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chr22:22305385-22304984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 135
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr22:15312839-15313255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 340
               

               
Conread position:
               
94-479
               

               
Cow position:
               
chr22:36184869-36184473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 254
               

               
Conread position:
               
95-486
               

               
Cow position:
               
chr22:35913055-35913448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 178
               

               
Conread position:
               
114-501
               

               
Cow position:
               
chr22:40721566-40721170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
61-473
               

               
Cow position:
               
chr23:14262997-14262578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
93-370
               

               
Cow position:
               
chr23:29402610-29402896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
93-467
               

               
Cow position:
               
chr23:3879976-3880354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
104-450
               

               
Cow position:
               
chr23:15041655-15041999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
93-252
               

               
Cow position:
               
chr24:43810149-43809986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
97-486
               

               
Cow position:
               
chr24:29352980-29353371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
138-330
               

               
Cow position:
               
chr24:29342092-29342283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 67
               

               
Conread position:
               
85-380
               

               
Cow position:
               
chr25:3924992-3924703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
86-476
               

               
Cow position:
               
chr25:16432231-16432612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr25:22148696-22148280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
95-428
               

               
Cow position:
               
chr25:24946957-24947293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
46, 288
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chr26:1482357-1482659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 192
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chr26:1484943-1485245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 192
               

               
Conread position:
               
93-449
               

               
Cow position:
               
chr26:32684623-32684983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr27:1210467-1210073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 252
               

               
Conread position:
               
108-399
               

               
Cow position:
               
chr27:1848238-1848540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
110-505
               

               
Cow position:
               
chr27:17319407-17319798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
133-476
               

               
Cow position:
               
chr27:30203085-30202739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 213
               

               
Conread position:
               
93-335
               

               
Cow position:
               
chr28:28439969-28439724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr28:5750550-5750935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 250
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr28:14704230-14704625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr28:26425098-26425493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chr28:32791221-32791633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr28:17666149-17666561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 253
               

               
Conread position:
               
99-486
               

               
Cow position:
               
chr28:27678701-27678321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 212
               

               
Conread position:
               
102-479
               

               
Cow position:
               
chr28:22064246-22064622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
22, 208
               

               
Conread position:
               
73-460
               

               
Cow position:
               
chr29:11227504-11227900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
89-469
               

               
Cow position:
               
chr29:37165261-37164873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
90-421
               

               
Cow position:
               
chr29:19622157-19622499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chr29:43408501-43408863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 160
               

               
Conread position:
               
93-370
               

               
Cow position:
               
chr29:19654750-19654468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 235
               

               
Conread position:
               
93-479
               

               
Cow position:
               
chr29:34798687-34799077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 240
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr29:6213645-6213230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
95-377
               

               
Cow position:
               
chr29:38237402-38237695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
95-380
               

               
Cow position:
               
chr29:28576260-28576544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
100-325
               

               
Cow position:
               
chr29:8611955-8612182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
103-493
               

               
Cow position:
               
chr29:31023683-31024073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr29:21238280-21238619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 140
               

               
Conread position:
               
90-450
               

               
Cow position:
               
chr6:44905565-44905206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
90-501
               

               
Cow position:
               
chr6:27471663-27471266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
91-479
               

               
Cow position:
               
chr6:40866242-40866632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
93-263
               

               
Cow position:
               
chr6:44524370-44524545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
93-485
               

               
Cow position:
               
chr6:34891044-34891445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 338
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr6:27528917-27529341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr6:30273815-30274228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 206
               

               
Conread position:
               
94-449
               

               
Cow position:
               
chr6:4258673-4259030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
98-420
               

               
Cow position:
               
chr6:64816126-64816450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
98-504
               

               
Cow position:
               
chr6:28104779-28105193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 234
               

               
Conread position:
               
129-477
               

               
Cow position:
               
chr6:28169947-28169591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
50, 301
               

               
Conread position:
               
160-403
               

               
Cow position:
               
chr6:51807930-51807687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
90-447
               

               
Cow position:
               
chr7:22617703-22617344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
90-477
               

               
Cow position:
               
chr7:22013153-22013532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 257
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr7:40006678-40006875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
93-370
               

               
Cow position:
               
chr7:34150477-34150192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 240
               

               
Conread position:
               
96-500
               

               
Cow position:
               
chr7:50660179-50660588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 178
               

               
Conread position:
               
108-434
               

               
Cow position:
               
chr7:9860686-9861030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 272
               

               
Conread position:
               
140-391
               

               
Cow position:
               
chr7:22758493-22758241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
148-485
               

               
Cow position:
               
chr7:22187454-22187784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
39, 257
               

               
Conread position:
               
81-486
               

               
Cow position:
               
chr8:39835305-39834905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
90-486
               

               
Cow position:
               
chr8:39809136-39809531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
93-421
               

               
Cow position:
               
chr8:25775314-25775654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 197
               

               
Conread position:
               
93-452
               

               
Cow position:
               
chr8:51666464-51666833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 339
               

               
Conread position:
               
93-485
               

               
Cow position:
               
chr8:46180481-46180088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
93, 217
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chr8:44662345-44662748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
32, 127
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr8:3855667-3856073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 230
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr8:32318194-32318609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
93-502
               

               
Cow position:
               
chr8:33589736-33589316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 340
               

               
Conread position:
               
95-450
               

               
Cow position:
               
chr8:42870221-42869858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
98-269
               

               
Cow position:
               
chr8:10365676-10365847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
105-500
               

               
Cow position:
               
chr8:7162243-7161840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 325
               

               
Conread position:
               
46-501
               

               
Cow position:
               
chr9:7040384-7039945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
52-473
               

               
Cow position:
               
chr9:7016927-7016508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
90-478
               

               
Cow position:
               
chr9:52292416-52292042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
91-276
               

               
Cow position:
               
chr9:31046313-31046504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chr9:18508813-18509140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chr9:12062999-12062596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chr9:28655361-28654950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr9:60277006-60277422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
34, 337
               

               
Conread position:
               
95-344
               

               
Cow position:
               
chr9:47810231-47810487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
95-505
               

               
Cow position:
               
chr9:48808343-48808742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
46-450
               

               
Cow position:
               
chrX:1391903-1391490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
85-500
               

               
Cow position:
               
chrX:18842046-18842462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 210
               

               
Conread position:
               
86-503
               

               
Cow position:
               
chrX:27120880-27121302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
89-476
               

               
Cow position:
               
chrX:6198190-6198586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 210
               

               
Conread position:
               
90-338
               

               
Cow position:
               
chrX:27006413-27006153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 181
               

               
Conread position:
               
90-339
               

               
Cow position:
               
chrX:18900183-18900435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
92-368
               

               
Cow position:
               
chrX:33707351-33707066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 202
               

               
Conread position:
               
93-313
               

               
Cow position:
               
chrX:21275996-21276222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
93-322
               

               
Cow position:
               
chrX:15118154-15118380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
93-420
               

               
Cow position:
               
chrX:23455102-23455438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
93-500
               

               
Cow position:
               
chrX:23213431-23213847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 253
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chrX:2481716-2482131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
86, 336
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chrX:29852649-29853066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
94-480
               

               
Cow position:
               
chrX:29996288-29996677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
95-338
               

               
Cow position:
               
chrX:18242082-18241842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chrX:4411561-4411279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
259, 92
               

               
Conread position:
               
95-501
               

               
Cow position:
               
chrX:27344549-27344942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
97-478
               

               
Cow position:
               
chrX:18553341-18552952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 245
               

               
Conread position:
               
103-476
               

               
Cow position:
               
chrX:29120337-29119964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
109-486
               

               
Cow position:
               
chrX:27390289-27390668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
62, 58
               

               
Conread position:
               
114-376
               

               
Cow position:
               
chrX:39763496-39763222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
114-486
               

               
Cow position:
               
chrX:17491073-17491449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
130-485
               

               
Cow position:
               
chrX:19468896-19468540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
55, 240
               

               
Conread position:
               
200-505
               

               
Cow position:
               
chrX:2641976-2641688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
143, 55