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Cow genome map

           
Conread name:
           
Spl1-SPL010020G03
        

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:17138147-17138408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
113, 61
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr10:57743327-57743778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
198, 61
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr10:48653998-48654226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr10:45269610-45269374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
126, 52
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr10:11110398-11110744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr10:6905430-6905792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr10:24782782-24782381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr10:65733498-65733911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 52
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr10:60703907-60703489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr10:40580916-40581342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr10:41772360-41771922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr10:55010927-55011385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr10:31739109-31739562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr10:37041126-37041577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr10:41570225-41570683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr10:4702045-4701704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr10:50314748-50315159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 223
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr10:28935279-28935737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr10:53200284-53200659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 54
               

               
Conread position:
               
9-440
               

               
Cow position:
               
chr10:44100704-44101136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr10:44292128-44291848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
201, 45
               

               
Conread position:
               
10-368
               

               
Cow position:
               
chr10:39650343-39649981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
10-406
               

               
Cow position:
               
chr10:1662839-1662445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
13-419
               

               
Cow position:
               
chr10:39264769-39265176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
14-238
               

               
Cow position:
               
chr10:64205178-64205395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
14-307
               

               
Cow position:
               
chr10:49553765-49553471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
66-300
               

               
Cow position:
               
chr10:40738211-40738448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr11:15653247-15653680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr11:61297532-61297325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr11:42366055-42366288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr11:54650107-54649827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
290, 50
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chr11:39484041-39484343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr11:9897185-9897525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-378
               

               
Cow position:
               
chr11:8819969-8820337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
170, 64
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr11:81067508-81067884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr11:40231236-40230860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr11:56417311-56416935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr11:11174090-11174487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 65
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr11:51034048-51034445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr11:84966873-84967277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr11:28786584-28786994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr11:53308137-53307728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr11:26655373-26655779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
63, 152
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr11:33601869-33601438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 65
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr11:40403000-40402573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 147
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr11:49485628-49486064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr11:44233193-44233619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 62
               

               
Conread position:
               
3-458
               

               
Cow position:
               
chr11:73039339-73039758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
281, 35
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr11:40773294-40772850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 44
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr11:65281778-65282230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
239, 62
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr11:67920573-67920121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-468
               

               
Cow position:
               
chr11:69168008-69168485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
3-472
               

               
Cow position:
               
chr11:10850880-10851338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr11:21879030-21878787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
4-424
               

               
Cow position:
               
chr11:2951327-2950916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
4-428
               

               
Cow position:
               
chr11:27889593-27889990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
4-462
               

               
Cow position:
               
chr11:15942551-15942106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
95, 59
               

               
Conread position:
               
18-325
               

               
Cow position:
               
chr11:42229340-42229649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
105-382
               

               
Cow position:
               
chr11:42517208-42517480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 70
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr12:42558015-42557637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr12:35367448-35367804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr12:15080636-15081015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr12:11582212-11582645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr12:4010787-4011224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
4-418
               

               
Cow position:
               
chr12:10403347-10402929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
7-385
               

               
Cow position:
               
chr12:42193260-42193640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 56
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr12:28763947-28763532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr12:42605123-42604680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
73, 52
               

               
Conread position:
               
15-465
               

               
Cow position:
               
chr12:36665525-36665952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
65-462
               

               
Cow position:
               
chr12:32354408-32354812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
69, 182
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr13:19655384-19655025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr13:11169314-11169098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr13:51482000-51481650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr13:27539964-27540344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr13:35760383-35760818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr13:11571833-11571382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
137, 7
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr13:3783970-3784427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr13:2833953-2833612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
4-462
               

               
Cow position:
               
chr13:4667931-4668384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
5-399
               

               
Cow position:
               
chr13:10732820-10733212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 116
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr13:11687134-11687531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
10-428
               

               
Cow position:
               
chr13:47569927-47570340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
12-427
               

               
Cow position:
               
chr13:19141380-19141791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 213
               

               
Conread position:
               
14-484
               

               
Cow position:
               
chr13:34095073-34094600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 135
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr14:18107249-18107655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr14:38226298-38226063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr14:39936462-39936767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr14:32449673-32450102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr14:32584321-32583885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chr14:35603792-35604237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr14:39321544-39321996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr14:40501545-40501882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr14:35382769-35382433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
183, 64
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr14:41477639-41478092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chr14:28691340-28691130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
18-386
               

               
Cow position:
               
chr14:7598493-7598857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr15:8359353-8359800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 62
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr15:32844078-32843824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 73
               

               
Conread position:
               
2-333
               

               
Cow position:
               
chr15:29899045-29899373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 63
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr15:29864568-29864389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr15:25104387-25104012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr15:38240207-38240575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr15:46105935-46106307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr15:6330835-6331224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr15:32876740-32877120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr15:7841042-7841469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
175, 62
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr15:36423905-36423464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 64
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr15:6281360-6281808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
109, 62
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr15:48556428-48556887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr15:16925987-16925582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr15:46231209-46231664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
9-462
               

               
Cow position:
               
chr15:37460588-37461021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr15:41785994-41785636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr15:53355358-53355008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr16:8591770-8592000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 59
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr16:11309708-11310082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr16:4748592-4748208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 53
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr16:43647141-43647472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr16:12535578-12535189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr16:20721069-20721488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr16:4690792-4691213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr16:14352321-14351882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr16:3148670-3148218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr16:42863221-42862912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
168, 64
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr16:44049562-44049103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 60
               

               
Conread position:
               
11-424
               

               
Cow position:
               
chr16:259463-259065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
13-391
               

               
Cow position:
               
chr16:45559664-45560045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 141
               

               
Conread position:
               
69-406
               

               
Cow position:
               
chr16:29864894-29864565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 63
               

               
Conread position:
               
144-451
               

               
Cow position:
               
chr16:12175555-12175256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 35
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr17:10285941-10285515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr17:26474353-26474575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr17:18785347-18785721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr17:35999789-35999413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 240
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr17:5391308-5390924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr17:13936215-13935831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr17:22774516-22774143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
175, 62
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr17:4608208-4608609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 57
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr17:43471670-43471261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr17:12133085-12132674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr17:20215011-20215459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 64
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr17:29156301-29156762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr17:28184072-28183739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
4-377
               

               
Cow position:
               
chr17:31311311-31310942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr17:20703255-20702864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
367, 56
               

               
Conread position:
               
4-453
               

               
Cow position:
               
chr17:27978032-27978476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
9-148
               

               
Cow position:
               
chr17:41919111-41919247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
9-324
               

               
Cow position:
               
chr17:36310629-36310930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr17:8068300-8067918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
161, 56
               

               
Conread position:
               
13-406
               

               
Cow position:
               
chr17:42383119-42382730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
13-431
               

               
Cow position:
               
chr17:3550325-3549913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
22-431
               

               
Cow position:
               
chr17:41479259-41478869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
67-465
               

               
Cow position:
               
chr17:40281995-40282383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr18:15494235-15493957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
149, 55
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr18:17997494-17997174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr18:23682748-23682428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr18:33347234-33347563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr18:41900823-41900485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 60
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr18:13025002-13025376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr18:33893690-33894090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
128, 55
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr18:40342691-40342289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr18:44403983-44404400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr18:54065923-54065490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr18:902172-902613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr18:17335592-17335137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr18:54630009-54629552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr18:41260302-41260682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr18:28268773-28268370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr18:15486031-15485643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
18-425
               

               
Cow position:
               
chr18:25199919-25200327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
176, 34
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr19:19406154-19406405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr19:36708229-36707995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr19:5384566-5384864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr19:33641221-33641563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr19:48477723-48478079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr19:27082259-27081856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-412
               

               
Cow position:
               
chr19:12057354-12057750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr19:24672346-24671922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 61
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr19:36351424-36351859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr19:45464296-45464742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
62, 69
               

               
Conread position:
               
4-154
               

               
Cow position:
               
chr19:45149722-45149576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
4-365
               

               
Cow position:
               
chr19:50558971-50559328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
9-356
               

               
Cow position:
               
chr19:6173379-6173046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
11-462
               

               
Cow position:
               
chr19:29088907-29089352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
14-418
               

               
Cow position:
               
chr19:52466126-52465720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
21-360
               

               
Cow position:
               
chr19:18359169-18358852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
30-413
               

               
Cow position:
               
chr19:14366998-14367394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
37-436
               

               
Cow position:
               
chr19:19461720-19462114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
316, 7
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr2:38188362-38187944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
66, 108
               

               
Conread position:
               
2-448
               

               
Cow position:
               
chr2:33584208-33583783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr2:78645596-78645438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr2:56113882-56114105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr2:85350100-85349725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr2:57054157-57054553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr2:47335142-47334759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr2:28847167-28847581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr2:46489125-46488686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
118, 57
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr2:4931548-4931110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
175, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr2:22134100-22133662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
208, 11
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr2:26080115-26080554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr2:64791227-64790790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr2:77067143-77067595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
125, 59
               

               
Conread position:
               
6-482
               

               
Cow position:
               
chr2:39919059-39918596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
10-441
               

               
Cow position:
               
chr2:2018165-2018595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
154, 55
               

               
Conread position:
               
13-230
               

               
Cow position:
               
chr2:38082525-38082303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
16-384
               

               
Cow position:
               
chr2:53174933-53175302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
20-468
               

               
Cow position:
               
chr2:55474636-55474194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
114, 196
               

               
Conread position:
               
47-466
               

               
Cow position:
               
chr2:77033982-77034377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 20
               

               
Conread position:
               
69-415
               

               
Cow position:
               
chr2:4795663-4796011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
110-369
               

               
Cow position:
               
chr2:46453089-46452837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 133
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr20:5538294-5538466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr20:30461917-30462303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr20:34231744-34231358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr20:9339136-9339567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr20:28560772-28560340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
170, 57
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr20:28724868-28725316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr20:25331040-25330591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr20:20364629-20364235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
12-454
               

               
Cow position:
               
chr20:33295828-33295385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
83-431
               

               
Cow position:
               
chr20:42931041-42931393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
2-406
               

               
Cow position:
               
chr21:33948541-33948937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr21:46291602-46292055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 7
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr21:4191516-4191974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr21:15247576-15247345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 34
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr21:12099755-12100017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr21:20773064-20773355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr21:30161989-30161691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:46357513-46357160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr21:44262428-44262801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr21:13274814-13275244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr21:30312926-30313353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 57
               

               
Conread position:
               
4-366
               

               
Cow position:
               
chr21:21478803-21478445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr21:48895715-48896077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
19-394
               

               
Cow position:
               
chr21:49647728-49647354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
19-415
               

               
Cow position:
               
chr21:25814157-25813777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
136, 45
               

               
Conread position:
               
19-427
               

               
Cow position:
               
chr21:35947625-35947212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr21:25290920-25291324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
28-341
               

               
Cow position:
               
chr21:37353387-37353094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
29-399
               

               
Cow position:
               
chr21:3479663-3480037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
65-440
               

               
Cow position:
               
chr21:21020607-21020980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr22:33437140-33436750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 83
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr22:8646723-8646300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr22:13289905-13290385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr22:8267508-8267915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
320, 61
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr22:40609450-40609670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
134, 59
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr22:36852785-36852392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
3-413
               

               
Cow position:
               
chr22:30363911-30364304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
216, 52
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr22:32220509-32220928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr22:39132929-39133352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr22:17325447-17325011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
3-461
               

               
Cow position:
               
chr22:41169945-41170389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
128, 57
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr22:28312446-28312884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr22:41922384-41922744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
10-424
               

               
Cow position:
               
chr22:31110473-31110885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 103
               

               
Conread position:
               
24-439
               

               
Cow position:
               
chr22:3065730-3065313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
119, 43
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr23:39246878-39247063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr23:2040104-2040332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr23:7130083-7129742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr23:16367970-16368321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr23:2532452-2532078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr23:10904932-10905316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 52
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr23:36676101-36675695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr23:7359503-7359957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr23:21277592-21277136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr23:30623455-30622997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr23:8100305-8100740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr23:30547146-30546774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 149
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chr23:7962102-7961787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr23:20171148-20170748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 111
               

               
Conread position:
               
13-415
               

               
Cow position:
               
chr23:1338430-1338035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr24:17030861-17030514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr24:37222682-37222355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
150, 60
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr24:37197581-37197128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr24:31234122-31233908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr24:30893719-30893335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
9-435
               

               
Cow position:
               
chr24:1067276-1066871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
11-428
               

               
Cow position:
               
chr24:22911816-22912235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
20-453
               

               
Cow position:
               
chr24:28730216-28730625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr25:15929641-15929882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
2-441
               

               
Cow position:
               
chr25:13941907-13941460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 61
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr25:28661667-28661971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr25:28420867-28420527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr25:14962031-14961658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr25:20633599-20633987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr25:9646796-9647197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 60
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr25:34673739-34673347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chr25:29526029-29525614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr25:20772494-20772065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
170, 59
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr25:20495403-20495818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
3-467
               

               
Cow position:
               
chr25:23673029-23672568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
141, 62
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chr25:23895104-23895454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr25:16522911-16523283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 51
               

               
Conread position:
               
17-453
               

               
Cow position:
               
chr25:9979968-9979545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
37-269
               

               
Cow position:
               
chr25:31590937-31590708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
66-438
               

               
Cow position:
               
chr25:747373-747719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 106
               

               
Conread position:
               
71-339
               

               
Cow position:
               
chr25:39299347-39299087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
83-426
               

               
Cow position:
               
chr25:24056804-24056465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr26:26280927-26281066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr26:232229-231904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr26:12551901-12551611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr26:4112177-4111821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr26:35148786-35148336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
134, 59
               

               
Conread position:
               
18-452
               

               
Cow position:
               
chr26:7021919-7022334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
46-439
               

               
Cow position:
               
chr26:17538094-17538477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
91-376
               

               
Cow position:
               
chr26:13199432-13199717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr27:1845835-1845460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr27:17864054-17864482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 61
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr27:26621207-26620864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr27:27278767-27279145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr27:27045226-27045621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr27:25873684-25874075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 61
               

               
Conread position:
               
3-445
               

               
Cow position:
               
chr27:8592442-8592872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
186, 62
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr27:16427707-16428162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
14-379
               

               
Cow position:
               
chr27:16110083-16110449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
120, 54
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chr28:14447691-14448155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr28:8616182-8615948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr28:22153435-22153781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 6
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chr28:12243731-12244095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
3-378
               

               
Cow position:
               
chr28:13975419-13975788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
75, 60
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr28:22234391-22234008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr28:12650319-12650748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr28:21629768-21630177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr28:22485568-22485997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 109
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr28:26419911-26419470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 57
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr28:7744192-7744654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr28:20629994-20629534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr28:29435705-29435255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr28:33768115-33768356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chr28:26563274-26563631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
10-472
               

               
Cow position:
               
chr28:23794472-23794022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
133, 55
               

               
Conread position:
               
15-250
               

               
Cow position:
               
chr28:20672492-20672725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
76-327
               

               
Cow position:
               
chr28:34200875-34200627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr29:26967777-26968064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr29:29600124-29599742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr29:15931240-15930876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr29:36628282-36628656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr29:35281055-35280676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
175, 64
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr29:607577-607188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr29:578847-578455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr29:1478512-1478921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr29:13099230-13099648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
141, 113
               

               
Conread position:
               
3-436
               

               
Cow position:
               
chr29:20972482-20972044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr29:10237610-10237156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr29:8624136-8623705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chr29:18399330-18399772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
10-387
               

               
Cow position:
               
chr29:41163824-41163450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
10-406
               

               
Cow position:
               
chr29:2307069-2307468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
145, 55
               

               
Conread position:
               
35-392
               

               
Cow position:
               
chr29:11526828-11526481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
190-431
               

               
Cow position:
               
chr29:16320085-16319848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr3:79316223-79316615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 34
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr3:27223021-27223470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr3:37015209-37015662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 246
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr3:14881551-14881254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr3:56023363-56023684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
3-357
               

               
Cow position:
               
chr3:58026037-58025677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr3:10038172-10038553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr3:42977610-42977233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr3:39233562-39233961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 57
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr3:10855330-10854942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr3:83767227-83767629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-413
               

               
Cow position:
               
chr3:57977574-57977160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
152, 69
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr3:23010346-23010745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr3:322878-322449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr3:35619531-35619968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr3:49542227-49541792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
175, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr3:72864067-72863633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 60
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr3:24443121-24442686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
3-453
               

               
Cow position:
               
chr3:45615314-45615754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
150, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr3:2707895-2707440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr3:23204700-23204242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 62
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr3:40101875-40101425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
170, 12
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr3:24456039-24455717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
6-364
               

               
Cow position:
               
chr3:27515253-27515611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 54
               

               
Conread position:
               
7-399
               

               
Cow position:
               
chr3:226899-226517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
89-429
               

               
Cow position:
               
chr3:49165352-49165008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr4:21972913-21972764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr4:384448-384673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr4:27553610-27553842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr4:43236319-43236055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr4:25823232-25822849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
149, 62
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr4:9712507-9712909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 61
               

               
Conread position:
               
3-406
               

               
Cow position:
               
chr4:26745300-26745701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
62, 119
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr4:10122193-10122595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr4:358664-359103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr4:606390-606826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
3-460
               

               
Cow position:
               
chr4:60044461-60044030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
396, 60
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr4:1935748-1935279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 127
               

               
Conread position:
               
4-149
               

               
Cow position:
               
chr4:1528477-1528335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr4:3962107-3961656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
13-361
               

               
Cow position:
               
chr4:55670038-55670385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
18-369
               

               
Cow position:
               
chr4:42588812-42588458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
115-394
               

               
Cow position:
               
chr4:45765080-45764815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr5:26404036-26403888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr5:21920948-21921169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr5:4042314-4042040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr5:62759258-62758944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr5:68337618-68337239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr5:26058010-26058415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
3-439
               

               
Cow position:
               
chr5:72299390-72298951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr5:25912612-25913039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
175, 52
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr5:22857755-22857293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 237
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr5:23829296-23828857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
149, 64
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr5:4963501-4963045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
3-503
               

               
Cow position:
               
chr5:3809359-3809871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr5:2959154-2959535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
107, 59
               

               
Conread position:
               
4-442
               

               
Cow position:
               
chr5:40791721-40792151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 6
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr5:57363892-57363500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
14-463
               

               
Cow position:
               
chr5:29674112-29674547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
20-413
               

               
Cow position:
               
chr5:54658718-54658340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
188-434
               

               
Cow position:
               
chr5:27100296-27100537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr6:63598703-63599065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr6:34273847-34273389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
146, 32
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr6:68826834-68826386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 58
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr6:31624833-31625069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr6:58016374-58016694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr6:51868013-51868368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr6:6121340-6120987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 60
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr6:19441224-19441648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
61, 87
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr6:27341619-27342056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
3-460
               

               
Cow position:
               
chr6:47154431-47154867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr6:53773069-53773539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr6:6182690-6182247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr6:28102847-28102394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr6:50485755-50485250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
4-418
               

               
Cow position:
               
chr6:14144051-14144457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
4-425
               

               
Cow position:
               
chr6:7161795-7162200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
319, 56
               

               
Conread position:
               
4-465
               

               
Cow position:
               
chr6:53672357-53672817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
14-440
               

               
Cow position:
               
chr6:60876331-60876756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr6:63771053-63770853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
38-419
               

               
Cow position:
               
chr6:16605011-16605396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 212
               

               
Conread position:
               
46-461
               

               
Cow position:
               
chr6:35724445-35724859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
79-327
               

               
Cow position:
               
chr6:31226561-31226804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
99-465
               

               
Cow position:
               
chr6:65011281-65011642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr7:1312246-1312028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr7:32328949-32329359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr7:37055996-37056393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
2-465
               

               
Cow position:
               
chr7:1214970-1215406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr7:40263242-40262885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
139, 18
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr7:10824444-10824107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr7:46460625-46461002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr7:32438192-32437817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr7:6207699-6208100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 60
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr7:30414915-30415294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr7:69115518-69115914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr7:10451147-10450739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr7:51941367-51941787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
3-434
               

               
Cow position:
               
chr7:3949533-3949952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
169, 42
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr7:39095387-39094969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
406, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr7:66274002-66273540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr7:61577017-61576563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
4-406
               

               
Cow position:
               
chr7:2159032-2158630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 184
               

               
Conread position:
               
9-440
               

               
Cow position:
               
chr7:48024477-48024892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
16-236
               

               
Cow position:
               
chr7:48625876-48626089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
18-387
               

               
Cow position:
               
chr7:42813962-42814329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr7:64199656-64199352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr8:4746007-4745706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr8:17958842-17958499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr8:12539763-12539415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 77
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr8:37267819-37268182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr8:20007830-20007454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr8:615374-614983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr8:12661880-12661470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
3-462
               

               
Cow position:
               
chr8:30031966-30031534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr8:40108474-40108922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr8:46800451-46800006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
3-472
               

               
Cow position:
               
chr8:49284771-49284314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr8:1935616-1936090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
4-410
               

               
Cow position:
               
chr8:30554624-30554209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr8:36633138-36632713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
173, 62
               

               
Conread position:
               
8-465
               

               
Cow position:
               
chr8:17992014-17991559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
225, 55
               

               
Conread position:
               
11-365
               

               
Cow position:
               
chr8:56481466-56481111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 51
               

               
Conread position:
               
13-375
               

               
Cow position:
               
chr8:8319147-8319508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
13-387
               

               
Cow position:
               
chr8:8279426-8279048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
13-417
               

               
Cow position:
               
chr8:42541047-42540648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
30-355
               

               
Cow position:
               
chr8:16532770-16532461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
35-285
               

               
Cow position:
               
chr8:46332208-46331969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
65-369
               

               
Cow position:
               
chr8:13970298-13970610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr9:52037320-52037766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr9:20421055-20420800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr9:37015092-37014773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
209, 55
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chr9:2102589-2102964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr9:1998348-1997914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr9:6252515-6252953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr9:12161555-12161985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr9:10678978-10678527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 187
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:17303026-17302572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:21412259-21412711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:21461423-21461866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:28658102-28657649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:53530665-53531107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chr9:59479901-59479449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr9:52408378-52407909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr9:49754465-49754239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
167, 70
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr9:26280788-26281166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 60
               

               
Conread position:
               
4-435
               

               
Cow position:
               
chr9:26100510-26100092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 63
               

               
Conread position:
               
9-465
               

               
Cow position:
               
chr9:16159455-16159910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
125, 42
               

               
Conread position:
               
10-379
               

               
Cow position:
               
chr9:20506065-20506427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
13-413
               

               
Cow position:
               
chr9:33477859-33478252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
13-456
               

               
Cow position:
               
chr9:5517144-5517577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 108
               

               
Conread position:
               
18-413
               

               
Cow position:
               
chr9:13117618-13117228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
21-424
               

               
Cow position:
               
chr9:6329427-6329037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
24-497
               

               
Cow position:
               
chr9:22842825-22842360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chrX:13069884-13069429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 76
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chrX:13090445-13089990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 76
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chrX:23236897-23237262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chrX:35532710-35533119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
129, 58
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chrX:26341348-26341059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chrX:23279882-23280274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chrX:1617374-1616963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chrX:17890050-17890470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 194
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chrX:37753278-37753685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chrX:29849762-29849332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
3-461
               

               
Cow position:
               
chrX:29029835-29029387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 60
               

               
Conread position:
               
3-462
               

               
Cow position:
               
chrX:17159262-17158807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chrX:10867001-10866554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 61
               

               
Conread position:
               
3-465
               

               
Cow position:
               
chrX:11744125-11744585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chrX:29759556-29760004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chrX:25847679-25847913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
4-385
               

               
Cow position:
               
chrX:164763-165137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
4-405
               

               
Cow position:
               
chrX:20363278-20362880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chrX:5649548-5649132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
10-397
               

               
Cow position:
               
chrX:27451170-27450796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
10-465
               

               
Cow position:
               
chrX:10410207-10409772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
353, 43
               

               
Conread position:
               
13-369
               

               
Cow position:
               
chrX:5070705-5070355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
203, 50
               

               
Conread position:
               
13-379
               

               
Cow position:
               
chrX:23974571-23974205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
14-387
               

               
Cow position:
               
chrX:37416717-37416349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
155, 50
               

               
Conread position:
               
14-399
               

               
Cow position:
               
chrX:28624888-28624506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
32-313
               

               
Cow position:
               
chrX:4429888-4430159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
75-378
               

               
Cow position:
               
chrX:23352807-23353104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
79-375
               

               
Cow position:
               
chrX:9402801-9402513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
141-435
               

               
Cow position:
               
chrX:42954445-42954731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
173, 33