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Cow genome map

           
Conread name:
           
Spl1-SPL01A110071
        

               
Conread position:
               
2-346
               

               
Cow position:
               
chr10:32835336-32834987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr10:58166463-58166706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
179, 60
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr10:61497904-61497538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 55
               

               
Conread position:
               
9-516
               

               
Cow position:
               
chr10:25579497-25580011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 48
               

               
Conread position:
               
9-593
               

               
Cow position:
               
chr10:4337412-4338005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 39
               

               
Conread position:
               
35-782
               

               
Cow position:
               
chr10:28935888-28935100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
798
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
207-699
               

               
Cow position:
               
chr10:31739518-31739022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
249-541
               

               
Cow position:
               
chr10:2231415-2231715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
296-801
               

               
Cow position:
               
chr10:41385548-41386062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
308-807
               

               
Cow position:
               
chr10:7857904-7858410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
531-801
               

               
Cow position:
               
chr10:39077685-39077411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
1-786
               

               
Cow position:
               
chr11:2950713-2951506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 28
               

               
Conread position:
               
51-513
               

               
Cow position:
               
chr11:27733199-27732735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
73-608
               

               
Cow position:
               
chr11:26560988-26561549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
73-808
               

               
Cow position:
               
chr11:49171170-49171944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
90-801
               

               
Cow position:
               
chr11:52248197-52247504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
109-731
               

               
Cow position:
               
chr11:33862803-33863461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 212
               

               
Conread position:
               
135-505
               

               
Cow position:
               
chr11:41098159-41098514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
157, 7
               

               
Conread position:
               
212-488
               

               
Cow position:
               
chr11:9166838-9167122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
220-505
               

               
Cow position:
               
chr11:21853083-21853377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
220-808
               

               
Cow position:
               
chr11:33601471-33602073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
224-789
               

               
Cow position:
               
chr11:10885435-10884866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
97, 6
               

               
Conread position:
               
245-669
               

               
Cow position:
               
chr11:9151542-9151967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
247-799
               

               
Cow position:
               
chr11:63186428-63185878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
249-801
               

               
Cow position:
               
chr11:42210670-42210099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
249-808
               

               
Cow position:
               
chr11:26051406-26051963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
250-637
               

               
Cow position:
               
chr11:52313065-52313445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
286-703
               

               
Cow position:
               
chr11:55486883-55486441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
75, 157
               

               
Conread position:
               
389-776
               

               
Cow position:
               
chr11:21878806-21879198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 42
               

               
Conread position:
               
529-808
               

               
Cow position:
               
chr11:52936648-52936362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
91-808
               

               
Cow position:
               
chr12:30502229-30501479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 187
               

               
Conread position:
               
200-643
               

               
Cow position:
               
chr12:8342609-8343040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
271-627
               

               
Cow position:
               
chr12:15909787-15910154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
84, 234
               

               
Conread position:
               
394-808
               

               
Cow position:
               
chr12:33689919-33689503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 41
               

               
Conread position:
               
1-801
               

               
Cow position:
               
chr13:51184785-51183954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
843
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr13:3650896-3651175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
81-723
               

               
Cow position:
               
chr13:38625600-38624944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 59
               

               
Conread position:
               
109-575
               

               
Cow position:
               
chr13:53713261-53712790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
100, 86
               

               
Conread position:
               
149-796
               

               
Cow position:
               
chr13:14182617-14183307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr13:11319319-11319068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
260-511
               

               
Cow position:
               
chr13:23401631-23401872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 158
               

               
Conread position:
               
260-731
               

               
Cow position:
               
chr13:2508338-2507850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 186
               

               
Conread position:
               
271-710
               

               
Cow position:
               
chr13:55963542-55963105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 193
               

               
Conread position:
               
296-801
               

               
Cow position:
               
chr13:12273098-12272583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 127
               

               
Conread position:
               
440-802
               

               
Cow position:
               
chr13:12565148-12565514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
542-808
               

               
Cow position:
               
chr13:48549053-48548782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr14:24989958-24990456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
1-518
               

               
Cow position:
               
chr14:13093134-13092623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 56
               

               
Conread position:
               
1-805
               

               
Cow position:
               
chr14:27051844-27052674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
845
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
60-552
               

               
Cow position:
               
chr14:18979940-18979436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
148, 27
               

               
Conread position:
               
69-784
               

               
Cow position:
               
chr14:33281252-33281997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
88-799
               

               
Cow position:
               
chr14:33515786-33515057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
120, 54
               

               
Conread position:
               
95-808
               

               
Cow position:
               
chr14:2292953-2292223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 53
               

               
Conread position:
               
246-513
               

               
Cow position:
               
chr14:37045826-37045555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
249-556
               

               
Cow position:
               
chr14:20673522-20673834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
249-659
               

               
Cow position:
               
chr14:19459789-19460216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
251-808
               

               
Cow position:
               
chr14:10091534-10092109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
495-801
               

               
Cow position:
               
chr14:37181167-37181485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
536-802
               

               
Cow position:
               
chr14:47450271-47449999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
88-515
               

               
Cow position:
               
chr15:18757561-18758005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
133-664
               

               
Cow position:
               
chr15:5040624-5040077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
142-507
               

               
Cow position:
               
chr15:24680519-24680127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
220-805
               

               
Cow position:
               
chr15:47201458-47202057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
224-801
               

               
Cow position:
               
chr15:8359735-8359160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
250-801
               

               
Cow position:
               
chr15:49448070-49448642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
261-453
               

               
Cow position:
               
chr15:13120970-13120772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
398-808
               

               
Cow position:
               
chr15:53574735-53575166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
453-781
               

               
Cow position:
               
chr15:19654925-19654581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
494-801
               

               
Cow position:
               
chr15:30638843-30639154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
1-716
               

               
Cow position:
               
chr16:1652329-1651608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
1-808
               

               
Cow position:
               
chr16:12175063-12175918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
870
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
73-799
               

               
Cow position:
               
chr16:27525090-27525844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
90-716
               

               
Cow position:
               
chr16:45801648-45801008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
95-463
               

               
Cow position:
               
chr16:24801971-24801577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 90
               

               
Conread position:
               
200-526
               

               
Cow position:
               
chr16:54651571-54651894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
220-808
               

               
Cow position:
               
chr16:45704029-45704632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
226-577
               

               
Cow position:
               
chr16:41762156-41761783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
249-518
               

               
Cow position:
               
chr16:44435016-44434739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
254-513
               

               
Cow position:
               
chr16:31501202-31500938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
292-752
               

               
Cow position:
               
chr16:39757230-39756761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
63, 378
               

               
Conread position:
               
308-583
               

               
Cow position:
               
chr16:29799264-29799555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 169
               

               
Conread position:
               
314-801
               

               
Cow position:
               
chr16:8805030-8804510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 397
               

               
Conread position:
               
334-805
               

               
Cow position:
               
chr16:45816467-45816951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
339-804
               

               
Cow position:
               
chr16:27979484-27979958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
536-789
               

               
Cow position:
               
chr16:32604578-32604333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
6-801
               

               
Cow position:
               
chr17:12132456-12133279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
846
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
65-808
               

               
Cow position:
               
chr17:10285389-10286140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
73-345
               

               
Cow position:
               
chr17:8008076-8007790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
81-758
               

               
Cow position:
               
chr17:22500875-22500157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr17:37701397-37700983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
243-575
               

               
Cow position:
               
chr17:8859338-8859675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
251-801
               

               
Cow position:
               
chr17:38942897-38942332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
351-801
               

               
Cow position:
               
chr17:35999524-35999985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
3-786
               

               
Cow position:
               
chr18:28209397-28210170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
797
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 32
               

               
Conread position:
               
90-637
               

               
Cow position:
               
chr18:14816915-14816331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
90-700
               

               
Cow position:
               
chr18:43129771-43129146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
243-801
               

               
Cow position:
               
chr18:48529627-48529060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 19
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr18:36606094-36605820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
295-660
               

               
Cow position:
               
chr18:41900496-41900873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
310-608
               

               
Cow position:
               
chr18:44180293-44180578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
205, 52
               

               
Conread position:
               
361-789
               

               
Cow position:
               
chr18:35740007-35739577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
102, 141
               

               
Conread position:
               
364-784
               

               
Cow position:
               
chr18:10978389-10977968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
236, 104
               

               
Conread position:
               
529-808
               

               
Cow position:
               
chr18:969914-969628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
1-518
               

               
Cow position:
               
chr19:40246459-40247005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
1-808
               

               
Cow position:
               
chr19:40248572-40247722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
862
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
32-554
               

               
Cow position:
               
chr19:28643594-28643069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
90-466
               

               
Cow position:
               
chr19:41213831-41214232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
163-517
               

               
Cow position:
               
chr19:6980739-6981112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
243-807
               

               
Cow position:
               
chr19:29089275-29088706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
249-553
               

               
Cow position:
               
chr19:50668605-50668305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
368-794
               

               
Cow position:
               
chr19:19406404-19405965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
389-784
               

               
Cow position:
               
chr19:28015140-28014731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
99, 288
               

               
Conread position:
               
437-801
               

               
Cow position:
               
chr19:15871302-15871686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
459-798
               

               
Cow position:
               
chr19:5110035-5110378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
1-799
               

               
Cow position:
               
chr2:4699946-4699139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
829
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
30-755
               

               
Cow position:
               
chr2:38187772-38188500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
53-784
               

               
Cow position:
               
chr2:64790648-64791410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
62-807
               

               
Cow position:
               
chr2:26080677-26079914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 28
               

               
Conread position:
               
73-808
               

               
Cow position:
               
chr2:74861113-74860359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
90-512
               

               
Cow position:
               
chr2:26033112-26032668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
90-581
               

               
Cow position:
               
chr2:42656850-42656340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
90-666
               

               
Cow position:
               
chr2:21474635-21475230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 73
               

               
Conread position:
               
90-800
               

               
Cow position:
               
chr2:72646204-72646948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
218-795
               

               
Cow position:
               
chr2:85349703-85350285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
228-676
               

               
Cow position:
               
chr2:44056828-44057287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
238-724
               

               
Cow position:
               
chr2:79907326-79907824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
251-808
               

               
Cow position:
               
chr2:81749637-81750224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
261-748
               

               
Cow position:
               
chr2:73655802-73656290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
271-780
               

               
Cow position:
               
chr2:73779868-73780401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
361-801
               

               
Cow position:
               
chr2:83198518-83198082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
159, 120
               

               
Conread position:
               
371-801
               

               
Cow position:
               
chr2:20351120-20351559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
407-795
               

               
Cow position:
               
chr2:43107137-43106735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
13-594
               

               
Cow position:
               
chr20:31367454-31368031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
90-801
               

               
Cow position:
               
chr20:35158920-35159665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 308
               

               
Conread position:
               
200-597
               

               
Cow position:
               
chr20:22446184-22446602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
202-808
               

               
Cow position:
               
chr20:14930767-14930159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
246-511
               

               
Cow position:
               
chr20:13384669-13384406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
617-804
               

               
Cow position:
               
chr20:20185845-20185652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
83, 163
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr21:13287027-13286416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
6-518
               

               
Cow position:
               
chr21:40618089-40618619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
75-801
               

               
Cow position:
               
chr21:40083324-40082562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 120
               

               
Conread position:
               
81-801
               

               
Cow position:
               
chr21:24082615-24083330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 14
               

               
Conread position:
               
90-784
               

               
Cow position:
               
chr21:21478267-21478979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
90-805
               

               
Cow position:
               
chr21:78260-78996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
109-603
               

               
Cow position:
               
chr21:20235974-20236516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
66, 173
               

               
Conread position:
               
231-529
               

               
Cow position:
               
chr21:10296273-10296565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
288-796
               

               
Cow position:
               
chr21:46357185-46357689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
307-801
               

               
Cow position:
               
chr21:30161691-30162180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
1-490
               

               
Cow position:
               
chr22:23010561-23011075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
1-801
               

               
Cow position:
               
chr22:14155249-14156105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
863
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
2-801
               

               
Cow position:
               
chr22:30065638-30066478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
848
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
90-808
               

               
Cow position:
               
chr22:8268033-8267317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
101-703
               

               
Cow position:
               
chr22:19048184-19048817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 178
               

               
Conread position:
               
109-429
               

               
Cow position:
               
chr22:14098169-14098498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
246-619
               

               
Cow position:
               
chr22:28312803-28312438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
364-808
               

               
Cow position:
               
chr22:22411724-22411270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
371-799
               

               
Cow position:
               
chr22:40775463-40775041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
444-808
               

               
Cow position:
               
chr22:2716066-2716437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 159
               

               
Conread position:
               
1-589
               

               
Cow position:
               
chr23:35313558-35314157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr23:34589003-34589581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
92-808
               

               
Cow position:
               
chr23:15351788-15351061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
111-787
               

               
Cow position:
               
chr23:30165781-30166479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 41
               

               
Conread position:
               
111-799
               

               
Cow position:
               
chr23:36675576-36676286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 169
               

               
Conread position:
               
271-801
               

               
Cow position:
               
chr23:16368308-16367775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
11-808
               

               
Cow position:
               
chr24:31302455-31301636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
830
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
19-528
               

               
Cow position:
               
chr24:39676168-39676690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
90-646
               

               
Cow position:
               
chr24:42385736-42386318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
98-583
               

               
Cow position:
               
chr24:37887023-37886507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 68
               

               
Conread position:
               
127-800
               

               
Cow position:
               
chr24:36478142-36478857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
192-799
               

               
Cow position:
               
chr24:31185351-31184727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 482
               

               
Conread position:
               
271-801
               

               
Cow position:
               
chr24:17030529-17031047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
337-802
               

               
Cow position:
               
chr24:19199372-19198894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 82
               

               
Conread position:
               
375-800
               

               
Cow position:
               
chr24:6464333-6463904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
497-800
               

               
Cow position:
               
chr24:25465478-25465799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-808
               

               
Cow position:
               
chr25:18285813-18286632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
35-657
               

               
Cow position:
               
chr25:425650-426280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
250-796
               

               
Cow position:
               
chr25:14012054-14011475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
317-789
               

               
Cow position:
               
chr25:21968314-21967817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
451-808
               

               
Cow position:
               
chr25:30326518-30326885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr26:26281512-26281055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
72-650
               

               
Cow position:
               
chr26:17538612-17538025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr26:2243089-2242829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
152, 88
               

               
Conread position:
               
90-728
               

               
Cow position:
               
chr26:21414954-21415595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
192-587
               

               
Cow position:
               
chr26:12992377-12991977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr27:16581489-16581969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
82-804
               

               
Cow position:
               
chr27:1904004-1904727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
202-808
               

               
Cow position:
               
chr27:17568567-17567942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
249-595
               

               
Cow position:
               
chr27:16110448-16110089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
263-518
               

               
Cow position:
               
chr27:29046039-29045778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
18, 185
               

               
Conread position:
               
73-710
               

               
Cow position:
               
chr28:10295454-10294803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
96-518
               

               
Cow position:
               
chr28:20774245-20774675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
96-708
               

               
Cow position:
               
chr28:22233855-22234482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
100-376
               

               
Cow position:
               
chr28:30258529-30258798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
119-530
               

               
Cow position:
               
chr28:32635282-32635717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
236-801
               

               
Cow position:
               
chr28:17599504-17600093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
238-806
               

               
Cow position:
               
chr28:20629615-20630191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
241-801
               

               
Cow position:
               
chr28:23916559-23915973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
248-784
               

               
Cow position:
               
chr28:12701114-12700560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 302
               

               
Conread position:
               
271-808
               

               
Cow position:
               
chr28:22153772-22153238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 72
               

               
Conread position:
               
304-804
               

               
Cow position:
               
chr28:21630071-21629579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
395-808
               

               
Cow position:
               
chr28:2662647-2663072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
536-782
               

               
Cow position:
               
chr28:22133693-22133447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 195
               

               
Conread position:
               
1-635
               

               
Cow position:
               
chr29:4490192-4489541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 57
               

               
Conread position:
               
224-540
               

               
Cow position:
               
chr29:1004335-1004015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
254-641
               

               
Cow position:
               
chr29:9680192-9680572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
263-529
               

               
Cow position:
               
chr29:6536812-6536540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
272-723
               

               
Cow position:
               
chr29:33101527-33101072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
201, 110
               

               
Conread position:
               
273-779
               

               
Cow position:
               
chr29:4083096-4083615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 335
               

               
Conread position:
               
279-788
               

               
Cow position:
               
chr29:43552374-43552897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
1-808
               

               
Cow position:
               
chr3:72863430-72864266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
859
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
5-521
               

               
Cow position:
               
chr3:16716227-16716754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
43-455
               

               
Cow position:
               
chr3:62896559-62896976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
68-722
               

               
Cow position:
               
chr3:48214944-48215610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
73-801
               

               
Cow position:
               
chr3:56644782-56645553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
74-332
               

               
Cow position:
               
chr3:73513151-73513422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
90-801
               

               
Cow position:
               
chr3:31321847-31321112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 184
               

               
Conread position:
               
97-805
               

               
Cow position:
               
chr3:21025905-21026630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
109-651
               

               
Cow position:
               
chr3:29802323-29801737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 177
               

               
Conread position:
               
202-581
               

               
Cow position:
               
chr3:64083764-64083371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
207-801
               

               
Cow position:
               
chr3:53907537-53908162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
211-799
               

               
Cow position:
               
chr3:39233980-39233376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
250-518
               

               
Cow position:
               
chr3:3715022-3714741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
252-526
               

               
Cow position:
               
chr3:27674370-27674648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
253-583
               

               
Cow position:
               
chr3:56577601-56577937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
261-466
               

               
Cow position:
               
chr3:66043361-66043577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
271-781
               

               
Cow position:
               
chr3:56963111-56963634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 267
               

               
Conread position:
               
288-602
               

               
Cow position:
               
chr3:72124271-72124583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
215, 63
               

               
Conread position:
               
317-808
               

               
Cow position:
               
chr3:18759139-18759646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
40, 208
               

               
Conread position:
               
385-801
               

               
Cow position:
               
chr3:69442363-69442772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
393-808
               

               
Cow position:
               
chr3:11181759-11182177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
414-801
               

               
Cow position:
               
chr3:24904856-24904478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
439-801
               

               
Cow position:
               
chr3:37659139-37658755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 80
               

               
Conread position:
               
457-799
               

               
Cow position:
               
chr3:61554543-61554902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
464-794
               

               
Cow position:
               
chr3:66043794-66044138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
9-804
               

               
Cow position:
               
chr4:1984317-1983496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
18-795
               

               
Cow position:
               
chr4:11104306-11105091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
71-489
               

               
Cow position:
               
chr4:30302303-30302727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
96-529
               

               
Cow position:
               
chr4:39262436-39262860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
264, 100
               

               
Conread position:
               
106-801
               

               
Cow position:
               
chr4:22492588-22491864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chr4:59556958-59557388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 397
               

               
Conread position:
               
133-808
               

               
Cow position:
               
chr4:23451731-23452437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
144-786
               

               
Cow position:
               
chr4:32000842-32000186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
232-808
               

               
Cow position:
               
chr4:453914-453342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
251-801
               

               
Cow position:
               
chr4:1187202-1187771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
457-806
               

               
Cow position:
               
chr4:43028198-43028544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
614-808
               

               
Cow position:
               
chr4:20789341-20789141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
1-797
               

               
Cow position:
               
chr5:15122788-15123582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 25
               

               
Conread position:
               
6-518
               

               
Cow position:
               
chr5:40928510-40929037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
73-462
               

               
Cow position:
               
chr5:57970196-57969794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 16
               

               
Conread position:
               
76-801
               

               
Cow position:
               
chr5:48409007-48409778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
191-467
               

               
Cow position:
               
chr5:45837036-45837328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 210
               

               
Conread position:
               
242-804
               

               
Cow position:
               
chr5:29674473-29673924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
20, 198
               

               
Conread position:
               
248-808
               

               
Cow position:
               
chr5:22555375-22554809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
250-561
               

               
Cow position:
               
chr5:11287276-11287598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
254-513
               

               
Cow position:
               
chr5:57791811-57792076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
271-700
               

               
Cow position:
               
chr5:46650330-46649898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 100
               

               
Conread position:
               
449-801
               

               
Cow position:
               
chr5:36773610-36773957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
487-786
               

               
Cow position:
               
chr5:32954341-32954641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
32, 193
               

               
Conread position:
               
528-801
               

               
Cow position:
               
chr5:54116509-54116236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 108
               

               
Conread position:
               
532-803
               

               
Cow position:
               
chr5:66286964-66286689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 183
               

               
Conread position:
               
612-801
               

               
Cow position:
               
chr5:24484338-24484143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr6:2088172-2087474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
23-476
               

               
Cow position:
               
chr6:6817253-6816768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
30-797
               

               
Cow position:
               
chr6:10570277-10571069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
73-594
               

               
Cow position:
               
chr6:46763813-46764366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
128, 22
               

               
Conread position:
               
73-628
               

               
Cow position:
               
chr6:12927161-12926574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
220-799
               

               
Cow position:
               
chr6:44950030-44950637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
224-805
               

               
Cow position:
               
chr6:53773477-53772882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
249-807
               

               
Cow position:
               
chr6:35724781-35724210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
271-512
               

               
Cow position:
               
chr6:65011535-65011296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 112
               

               
Conread position:
               
286-781
               

               
Cow position:
               
chr6:7940430-7940947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
351-801
               

               
Cow position:
               
chr6:31529708-31529247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
429-796
               

               
Cow position:
               
chr6:41414136-41414516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 277
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr7:33356288-33355717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
9-808
               

               
Cow position:
               
chr7:13103570-13104418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
858
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
10-539
               

               
Cow position:
               
chr7:31316262-31315731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
31-684
               

               
Cow position:
               
chr7:1215557-1214898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
60-652
               

               
Cow position:
               
chr7:28536423-28535825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
65-764
               

               
Cow position:
               
chr7:21877030-21877759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
73-517
               

               
Cow position:
               
chr7:4695580-4695142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
79-331
               

               
Cow position:
               
chr7:14343838-14344104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 108
               

               
Conread position:
               
88-799
               

               
Cow position:
               
chr7:53405039-53404312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
97-801
               

               
Cow position:
               
chr7:26022437-26021715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 180
               

               
Conread position:
               
109-801
               

               
Cow position:
               
chr7:699154-698429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
156-801
               

               
Cow position:
               
chr7:30652317-30651642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
161-804
               

               
Cow position:
               
chr7:58384408-58385082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
235-801
               

               
Cow position:
               
chr7:22761133-22760527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
246-801
               

               
Cow position:
               
chr7:57161242-57161818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
271-718
               

               
Cow position:
               
chr7:18444319-18444762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 144
               

               
Conread position:
               
363-795
               

               
Cow position:
               
chr7:43937986-43937564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
167, 86
               

               
Conread position:
               
1-722
               

               
Cow position:
               
chr8:7452501-7451766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
9-786
               

               
Cow position:
               
chr8:22281789-22280972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
28-595
               

               
Cow position:
               
chr8:17991401-17992002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
35-755
               

               
Cow position:
               
chr8:8224454-8225203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
71-801
               

               
Cow position:
               
chr8:39048452-39049225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
73-801
               

               
Cow position:
               
chr8:19053152-19052388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
81-512
               

               
Cow position:
               
chr8:30346962-30346507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
272-796
               

               
Cow position:
               
chr8:56481122-56481663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
12, 168
               

               
Conread position:
               
296-797
               

               
Cow position:
               
chr8:14580273-14580781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
231, 50
               

               
Conread position:
               
307-786
               

               
Cow position:
               
chr8:41742247-41741770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
335-804
               

               
Cow position:
               
chr8:21234592-21234102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
336-630
               

               
Cow position:
               
chr8:35581099-35581400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
397-808
               

               
Cow position:
               
chr8:19361103-19360695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr9:49964465-49964727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
210-805
               

               
Cow position:
               
chr9:3438912-3438326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
269-799
               

               
Cow position:
               
chr9:49118027-49117496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
358-806
               

               
Cow position:
               
chr9:15835477-15835940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
459-802
               

               
Cow position:
               
chr9:46896639-46896282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chrX:6088884-6089452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
9-500
               

               
Cow position:
               
chrX:22102281-22102776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
195, 52
               

               
Conread position:
               
68-802
               

               
Cow position:
               
chrX:165310-164564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
77-583
               

               
Cow position:
               
chrX:8807117-8807653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
90-786
               

               
Cow position:
               
chrX:20362736-20363464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
109-434
               

               
Cow position:
               
chrX:8108157-8107808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
111-518
               

               
Cow position:
               
chrX:37453584-37453170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
208-700
               

               
Cow position:
               
chrX:15989215-15989726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
226-668
               

               
Cow position:
               
chrX:29029439-29029892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
243-808
               

               
Cow position:
               
chrX:1449433-1448863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
251-786
               

               
Cow position:
               
chrX:2271851-2271295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
262-764
               

               
Cow position:
               
chrX:3061601-3061090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
275-801
               

               
Cow position:
               
chrX:23334543-23335082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
377-789
               

               
Cow position:
               
chrX:28212918-28212491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 109
               

               
Conread position:
               
485-804
               

               
Cow position:
               
chrX:18460127-18460445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
532-799
               

               
Cow position:
               
chrX:2607353-2607080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 22