Cow genome map
| Conread name: | Ss1.1-Blo1-PBL010007A08.5 |
| Conread position: | 2-146 |
| Cow position: | chr1:31542483-31542340 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 145-470 |
| Cow position: | chr1:31527293-31526969 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 157-462 |
| Cow position: | chr1:31583454-31583149 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 161 |
| Conread position: | 164-462 |
| Cow position: | chr1:31601481-31601183 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 138, 151 |
| Conread position: | 197-462 |
| Cow position: | chr1:31577813-31577548 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 136, 105 |
| Conread position: | 457-562 |
| Cow position: | chr1:31520390-31520285 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-462 |
| Cow position: | chr25:31264216-31263911 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 158-456 |
| Cow position: | chr25:31269809-31269511 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 180, 135 |
| Conread position: | 158-457 |
| Cow position: | chr25:31262317-31262018 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 161-462 |
| Cow position: | chr25:31267644-31267343 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 156-462 |
| Cow position: | chr26:28115621-28115315 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 252, 242 |
| Conread position: | 157-462 |
| Cow position: | chr26:28139176-28138871 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-462 |
| Cow position: | chr26:28142753-28142448 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-462 |
| Cow position: | chr26:28091123-28090819 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-462 |
| Cow position: | chr26:28111115-28110811 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-462 |
| Cow position: | chr26:35110346-35110045 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-367 |
| Cow position: | chr26:29301319-29301116 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 143, 154 |
| Conread position: | 164-462 |
| Cow position: | chr26:28121390-28121092 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 164-462 |
| Cow position: | chr26:28160565-28160267 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-462 |
| Cow position: | chr26:28173888-28173590 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 164-462 |
| Cow position: | chr26:28363160-28362862 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 143, 154 |
| Conread position: | 182-450 |
| Cow position: | chr26:35114843-35114575 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 242, 233 |
| Conread position: | 183-462 |
| Cow position: | chr26:28156961-28156682 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 237, 217 |
| Conread position: | 184-549 |
| Cow position: | chr26:28339044-28338677 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 126, 138 |
| Conread position: | 185-461 |
| Cow position: | chr26:28129316-28129040 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 108 |
| Conread position: | 185-462 |
| Cow position: | chr26:28152825-28152548 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-462 |
| Cow position: | chr26:29303853-29303581 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 120, 128 |
| Conread position: | 165-462 |
| Cow position: | chr29:28231379-28231085 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 248, 227 |
| Conread position: | 139-462 |
| Cow position: | chr5:59793851-59793529 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 7 |
| Conread position: | 139-462 |
| Cow position: | chr5:59797100-59796778 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:59775607-59775290 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:59812992-59812675 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:59853003-59852694 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 145-462 |
| Cow position: | chr5:61228361-61228678 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:61237383-61237700 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 273 |
| Conread position: | 145-462 |
| Cow position: | chr5:61246358-61246675 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:61285739-61286056 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:61296792-61297109 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:61306127-61306444 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-462 |
| Cow position: | chr5:61308444-61308761 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 145-470 |
| Cow position: | chr5:59857531-59857205 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 292 |
| Conread position: | 185-462 |
| Cow position: | chr5:61248725-61249002 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 453-564 |
| Cow position: | chr5:61300981-61301093 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 457-559 |
| Cow position: | chr5:59823956-59823854 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-562 |
| Cow position: | chr5:61219923-61220028 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-564 |
| Cow position: | chr5:59788073-59787966 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-564 |
| Cow position: | chr5:61281732-61281839 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |