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Cow genome map

           
Conread name:
           
Ss1.1-Bra1-PBL_15_E02.5
        

               
Conread position:
               
53-395
               

               
Cow position:
               
chr1:43976583-43976243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 262
               

               
Conread position:
               
66-437
               

               
Cow position:
               
chr1:54987522-54987895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
68-405
               

               
Cow position:
               
chr1:79915811-79915465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
72-268
               

               
Cow position:
               
chr1:53020215-53020427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
75-391
               

               
Cow position:
               
chr1:63123167-63122860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
76-384
               

               
Cow position:
               
chr1:56440071-56439751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
77-393
               

               
Cow position:
               
chr1:17478584-17478273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
78-362
               

               
Cow position:
               
chr1:68593594-68593312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
79-258
               

               
Cow position:
               
chr1:55867151-55867332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
79-316
               

               
Cow position:
               
chr1:40967625-40967390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr1:80620412-80620669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 131
               

               
Conread position:
               
79-368
               

               
Cow position:
               
chr1:88482901-88482603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
79-392
               

               
Cow position:
               
chr1:78069209-78069527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
79-395
               

               
Cow position:
               
chr1:77387843-77388161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
79-396
               

               
Cow position:
               
chr1:66828923-66828596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
79-397
               

               
Cow position:
               
chr1:5265807-5266128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
79-402
               

               
Cow position:
               
chr1:29791388-29791705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
79-406
               

               
Cow position:
               
chr1:50922744-50923097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
80-320
               

               
Cow position:
               
chr1:15786083-15786320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
80-361
               

               
Cow position:
               
chr1:70035471-70035190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
80-361
               

               
Cow position:
               
chr1:74545191-74545477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
80-361
               

               
Cow position:
               
chr1:91059747-91059462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
80-382
               

               
Cow position:
               
chr1:29605486-29605796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr1:71453532-71453798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
81-371
               

               
Cow position:
               
chr1:11408932-11408624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
81-386
               

               
Cow position:
               
chr1:26624270-26624576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
82-348
               

               
Cow position:
               
chr1:67482350-67482077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
82-364
               

               
Cow position:
               
chr1:40647065-40646777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 81
               

               
Conread position:
               
82-391
               

               
Cow position:
               
chr1:53648534-53648222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
82-416
               

               
Cow position:
               
chr1:9462978-9463307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
84-393
               

               
Cow position:
               
chr1:40479102-40479412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
85-371
               

               
Cow position:
               
chr1:22774071-22774361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
87-395
               

               
Cow position:
               
chr1:64608732-64609040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
88-319
               

               
Cow position:
               
chr1:74754314-74754541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
88-376
               

               
Cow position:
               
chr1:5215214-5215504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr1:53781864-53781566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
89-398
               

               
Cow position:
               
chr1:68521825-68521511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
90-309
               

               
Cow position:
               
chr1:31121618-31121839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr1:1940934-1941181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
95-372
               

               
Cow position:
               
chr1:4279084-4278811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
95-405
               

               
Cow position:
               
chr1:71121765-71121447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
109-289
               

               
Cow position:
               
chr1:34945221-34945038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
109-394
               

               
Cow position:
               
chr1:11210712-11210441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
113-372
               

               
Cow position:
               
chr1:3667276-3667530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
122-405
               

               
Cow position:
               
chr1:82569857-82569566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
91, 145
               

               
Conread position:
               
127-358
               

               
Cow position:
               
chr1:23577184-23577410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
129-395
               

               
Cow position:
               
chr1:29431091-29430820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
134-404
               

               
Cow position:
               
chr1:41731865-41732137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr1:84778379-84778149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
144-337
               

               
Cow position:
               
chr1:52162965-52163150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
159-341
               

               
Cow position:
               
chr1:62424481-62424668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
159-391
               

               
Cow position:
               
chr1:60086786-60086546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:55154050-55154212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
217-421
               

               
Cow position:
               
chr1:7631640-7631442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
218-370
               

               
Cow position:
               
chr1:79133074-79132920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
241-375
               

               
Cow position:
               
chr1:6798768-6798903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chr1:55867450-55867676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
253-393
               

               
Cow position:
               
chr1:90298247-90298105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
253-403
               

               
Cow position:
               
chr1:37306169-37306322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
75-376
               

               
Cow position:
               
chr10:26930633-26930945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
75-395
               

               
Cow position:
               
chr10:29798568-29798248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
76-394
               

               
Cow position:
               
chr10:29773536-29773205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
77-386
               

               
Cow position:
               
chr10:10202998-10203311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
77-394
               

               
Cow position:
               
chr10:8107367-8107709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
78-375
               

               
Cow position:
               
chr10:53443291-53442986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
78-377
               

               
Cow position:
               
chr10:44863881-44864186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 259
               

               
Conread position:
               
79-259
               

               
Cow position:
               
chr10:14649428-14649610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
79-389
               

               
Cow position:
               
chr10:48479166-48479478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr10:9343863-9343538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 316
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr10:52084228-52084539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
80-376
               

               
Cow position:
               
chr10:69941584-69941868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
81-294
               

               
Cow position:
               
chr10:17841798-17841577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
35, 152
               

               
Conread position:
               
81-298
               

               
Cow position:
               
chr10:5031870-5032095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
81-334
               

               
Cow position:
               
chr10:28076133-28076385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
81-336
               

               
Cow position:
               
chr10:1610734-1610483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr10:10957197-10957472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr10:57957507-57957774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
81-353
               

               
Cow position:
               
chr10:5505592-5505870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
81-363
               

               
Cow position:
               
chr10:36954146-36954433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
82-394
               

               
Cow position:
               
chr10:66172912-66173230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
84-259
               

               
Cow position:
               
chr10:13590471-13590296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
84-316
               

               
Cow position:
               
chr10:64163311-64163068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr10:39052944-39052637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
88-315
               

               
Cow position:
               
chr10:40420174-40419946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
88-385
               

               
Cow position:
               
chr10:48223568-48223868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 98
               

               
Conread position:
               
94-354
               

               
Cow position:
               
chr10:29291450-29291183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
94-401
               

               
Cow position:
               
chr10:4880050-4879735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
94-401
               

               
Cow position:
               
chr10:4885823-4885508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
95-393
               

               
Cow position:
               
chr10:46451490-46451795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
108-374
               

               
Cow position:
               
chr10:32783650-32783925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr10:65263202-65262886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
112-355
               

               
Cow position:
               
chr10:58230467-58230223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 145
               

               
Conread position:
               
112-373
               

               
Cow position:
               
chr10:66081583-66081834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
167, 28
               

               
Conread position:
               
112-389
               

               
Cow position:
               
chr10:28449237-28448966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chr10:11635712-11635411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
124-361
               

               
Cow position:
               
chr10:57773904-57773662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
125-395
               

               
Cow position:
               
chr10:55065689-55065966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
136-390
               

               
Cow position:
               
chr10:33219248-33219504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
158-363
               

               
Cow position:
               
chr10:24631702-24631498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
122, 81
               

               
Conread position:
               
187-410
               

               
Cow position:
               
chr10:46241838-46242060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
235-385
               

               
Cow position:
               
chr10:23872405-23872553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
248-393
               

               
Cow position:
               
chr10:17165493-17165640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
250-395
               

               
Cow position:
               
chr10:13590022-13589873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
72-392
               

               
Cow position:
               
chr11:23419252-23418943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
75-384
               

               
Cow position:
               
chr11:61754436-61754136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
205, 53
               

               
Conread position:
               
78-398
               

               
Cow position:
               
chr11:35507097-35506778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr11:17060372-17060111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
79-381
               

               
Cow position:
               
chr11:35502318-35502634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chr11:47137485-47137801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
79-391
               

               
Cow position:
               
chr11:53306722-53307037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
80-391
               

               
Cow position:
               
chr11:46035577-46035895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
81-363
               

               
Cow position:
               
chr11:55464832-55465123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
81-391
               

               
Cow position:
               
chr11:64315785-64316100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 283
               

               
Conread position:
               
81-394
               

               
Cow position:
               
chr11:10887216-10886902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 23
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr11:28747967-28748249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
82-385
               

               
Cow position:
               
chr11:57864462-57864768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
88-372
               

               
Cow position:
               
chr11:13954052-13954347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
88-376
               

               
Cow position:
               
chr11:61205431-61205141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 88
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr11:80809404-80809716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr11:74215974-74216291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:2813413-2813160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
94-399
               

               
Cow position:
               
chr11:47104040-47104354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
95-385
               

               
Cow position:
               
chr11:54094457-54094166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
112-389
               

               
Cow position:
               
chr11:39192648-39192919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 100
               

               
Conread position:
               
130-390
               

               
Cow position:
               
chr11:32269447-32269707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
155-354
               

               
Cow position:
               
chr11:25531453-25531645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr11:65022767-65022540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
218-392
               

               
Cow position:
               
chr11:59003573-59003748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
225-395
               

               
Cow position:
               
chr11:68476432-68476606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
237-372
               

               
Cow position:
               
chr11:57815619-57815756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
240-399
               

               
Cow position:
               
chr11:68750573-68750729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
66-357
               

               
Cow position:
               
chr12:25357015-25357309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
72-293
               

               
Cow position:
               
chr12:21052052-21052281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 173
               

               
Conread position:
               
73-373
               

               
Cow position:
               
chr12:21081189-21081505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
76-332
               

               
Cow position:
               
chr12:22448516-22448780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
79-319
               

               
Cow position:
               
chr12:26554214-26553969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
79-345
               

               
Cow position:
               
chr12:29630418-29630147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chr12:37359098-37358789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
81-230
               

               
Cow position:
               
chr12:28580641-28580490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
82-360
               

               
Cow position:
               
chr12:21284023-21284294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
176, 34
               

               
Conread position:
               
83-397
               

               
Cow position:
               
chr12:35305361-35305048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 205
               

               
Conread position:
               
88-305
               

               
Cow position:
               
chr12:25550016-25549793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
88-399
               

               
Cow position:
               
chr12:3896358-3896674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
122-399
               

               
Cow position:
               
chr12:26991442-26991729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr12:38819308-38819089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
183-389
               

               
Cow position:
               
chr12:25493710-25493917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 133
               

               
Conread position:
               
206-403
               

               
Cow position:
               
chr12:36200449-36200250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
207-394
               

               
Cow position:
               
chr12:5111285-5111096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
207-402
               

               
Cow position:
               
chr12:42619757-42619562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
224-399
               

               
Cow position:
               
chr12:3049886-3050059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
239-383
               

               
Cow position:
               
chr12:5167293-5167147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr13:30281384-30281055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
76-355
               

               
Cow position:
               
chr13:42059318-42059038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
79-371
               

               
Cow position:
               
chr13:1725869-1725572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
79-387
               

               
Cow position:
               
chr13:1640244-1639945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
79-391
               

               
Cow position:
               
chr13:10379441-10379760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
80-373
               

               
Cow position:
               
chr13:38352984-38352701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chr13:4706141-4706448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr13:179759-179442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
80-395
               

               
Cow position:
               
chr13:47287599-47287264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
81-331
               

               
Cow position:
               
chr13:510915-511164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
81-383
               

               
Cow position:
               
chr13:2790966-2790660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
82-346
               

               
Cow position:
               
chr13:53872142-53871876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
82-383
               

               
Cow position:
               
chr13:7000345-7000038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
83-377
               

               
Cow position:
               
chr13:53935149-53934855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
84-394
               

               
Cow position:
               
chr13:9131043-9131353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 236
               

               
Conread position:
               
94-383
               

               
Cow position:
               
chr13:60919186-60918893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
95-383
               

               
Cow position:
               
chr13:11570413-11570711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
99-387
               

               
Cow position:
               
chr13:3800613-3800324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr13:52078073-52077783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
125-367
               

               
Cow position:
               
chr13:9716477-9716230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
125-397
               

               
Cow position:
               
chr13:20490073-20490342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
210-397
               

               
Cow position:
               
chr13:60903045-60903231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
225-372
               

               
Cow position:
               
chr13:11252139-11252283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
245-390
               

               
Cow position:
               
chr13:8498821-8498678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
70-395
               

               
Cow position:
               
chr14:33098892-33099228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
70-395
               

               
Cow position:
               
chr14:41960226-41960545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
80-364
               

               
Cow position:
               
chr14:28574673-28574962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
80-371
               

               
Cow position:
               
chr14:12952352-12952055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
80-372
               

               
Cow position:
               
chr14:5642583-5642283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-373
               

               
Cow position:
               
chr14:25899158-25898888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
81-376
               

               
Cow position:
               
chr14:7620448-7620158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 14
               

               
Conread position:
               
81-389
               

               
Cow position:
               
chr14:38419376-38419694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
81-393
               

               
Cow position:
               
chr14:31194193-31194517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
82-353
               

               
Cow position:
               
chr14:37331336-37331613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr14:7173914-7173606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
85-322
               

               
Cow position:
               
chr14:25432480-25432234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
89-367
               

               
Cow position:
               
chr14:28296491-28296778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
94-391
               

               
Cow position:
               
chr14:15239350-15239045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
109-392
               

               
Cow position:
               
chr14:33080284-33080007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
170, 14
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr14:12556914-12556616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 112
               

               
Conread position:
               
122-399
               

               
Cow position:
               
chr14:10877956-10878235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
128-375
               

               
Cow position:
               
chr14:12163187-12162945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
143-339
               

               
Cow position:
               
chr14:11261965-11261761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
159-383
               

               
Cow position:
               
chr14:46807333-46807113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
208-390
               

               
Cow position:
               
chr14:23559412-23559596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
210-394
               

               
Cow position:
               
chr14:33681063-33680879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 5
               

               
Conread position:
               
217-406
               

               
Cow position:
               
chr14:48504715-48504519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 6
               

               
Conread position:
               
244-387
               

               
Cow position:
               
chr14:37345272-37345417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
245-518
               

               
Cow position:
               
chr14:31372452-31372730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
58-269
               

               
Cow position:
               
chr15:38003485-38003690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
60-398
               

               
Cow position:
               
chr15:49301838-49302179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
66-364
               

               
Cow position:
               
chr15:47339772-47340092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
79-237
               

               
Cow position:
               
chr15:5290797-5290960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chr15:41303537-41303270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr15:9734762-9735082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 184
               

               
Conread position:
               
79-398
               

               
Cow position:
               
chr15:31176607-31176278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr15:45729225-45729552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
80-309
               

               
Cow position:
               
chr15:15668953-15668717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr15:21341525-21341826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
81-372
               

               
Cow position:
               
chr15:43007279-43007586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
82-383
               

               
Cow position:
               
chr15:5653552-5653871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
82-391
               

               
Cow position:
               
chr15:24153126-24153439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
84-229
               

               
Cow position:
               
chr15:6642857-6643000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
86-398
               

               
Cow position:
               
chr15:2797627-2797945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 86
               

               
Conread position:
               
88-294
               

               
Cow position:
               
chr15:15644320-15644533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
96-366
               

               
Cow position:
               
chr15:40991740-40991464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
101-406
               

               
Cow position:
               
chr15:39580761-39580467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr15:43932424-43932160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
109-399
               

               
Cow position:
               
chr15:19838882-19839172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
111-384
               

               
Cow position:
               
chr15:28153215-28153487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 63
               

               
Conread position:
               
112-339
               

               
Cow position:
               
chr15:19810950-19811173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
125-395
               

               
Cow position:
               
chr15:23273127-23273409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
128-399
               

               
Cow position:
               
chr15:13056891-13057167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
181-395
               

               
Cow position:
               
chr15:31978419-31978196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
223-352
               

               
Cow position:
               
chr15:46468040-46468170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
66-397
               

               
Cow position:
               
chr16:5455357-5455701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
73-382
               

               
Cow position:
               
chr16:49913089-49913400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 174
               

               
Conread position:
               
75-398
               

               
Cow position:
               
chr16:21138636-21138308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 212
               

               
Conread position:
               
78-397
               

               
Cow position:
               
chr16:50519980-50519668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
78-397
               

               
Cow position:
               
chr16:51196342-51196663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
79-289
               

               
Cow position:
               
chr16:45232489-45232283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
79-348
               

               
Cow position:
               
chr16:36352062-36352329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
79-361
               

               
Cow position:
               
chr16:10659569-10659277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
79-380
               

               
Cow position:
               
chr16:55439973-55440248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
198, 39
               

               
Conread position:
               
79-400
               

               
Cow position:
               
chr16:5605491-5605819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
82-228
               

               
Cow position:
               
chr16:7568664-7568518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
82-382
               

               
Cow position:
               
chr16:46797320-46797037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
82-394
               

               
Cow position:
               
chr16:44666853-44667165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
84-348
               

               
Cow position:
               
chr16:12038677-12038957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
84-372
               

               
Cow position:
               
chr16:51416448-51416747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 275
               

               
Conread position:
               
85-301
               

               
Cow position:
               
chr16:56164651-56164426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
86-393
               

               
Cow position:
               
chr16:25021363-25021671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
33, 197
               

               
Conread position:
               
87-385
               

               
Cow position:
               
chr16:38179014-38178704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
90-316
               

               
Cow position:
               
chr16:40233438-40233197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
28, 189
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr16:15974809-15975097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
112-278
               

               
Cow position:
               
chr16:51481834-51481671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 62
               

               
Conread position:
               
140-391
               

               
Cow position:
               
chr16:50660534-50660791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
184-403
               

               
Cow position:
               
chr16:47887663-47887881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
196-399
               

               
Cow position:
               
chr16:50348688-50348479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 188
               

               
Conread position:
               
223-389
               

               
Cow position:
               
chr16:41878076-41878238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 36
               

               
Conread position:
               
225-390
               

               
Cow position:
               
chr16:26669081-26668921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
73-291
               

               
Cow position:
               
chr17:3889842-3890066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
76-249
               

               
Cow position:
               
chr17:12479194-12479011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
77-298
               

               
Cow position:
               
chr17:30414526-30414302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr17:17652508-17652190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
80-364
               

               
Cow position:
               
chr17:9348954-9348659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
80-375
               

               
Cow position:
               
chr17:19366650-19366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
80-383
               

               
Cow position:
               
chr17:39208395-39208700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
80-385
               

               
Cow position:
               
chr17:17085351-17085670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
81-324
               

               
Cow position:
               
chr17:24560125-24559875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
82-335
               

               
Cow position:
               
chr17:15115738-15115471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
82-386
               

               
Cow position:
               
chr17:17273795-17274101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr17:34322366-34322588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
95-395
               

               
Cow position:
               
chr17:17134809-17134506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
105-399
               

               
Cow position:
               
chr17:19404190-19404479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
122-316
               

               
Cow position:
               
chr17:26225273-26225476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
126-329
               

               
Cow position:
               
chr17:17155668-17155870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 48
               

               
Conread position:
               
210-395
               

               
Cow position:
               
chr17:34889600-34889413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
240-401
               

               
Cow position:
               
chr17:35439339-35439500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
66-391
               

               
Cow position:
               
chr18:24503421-24503099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
68-394
               

               
Cow position:
               
chr18:51397558-51397888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr18:10107899-10107586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
81-231
               

               
Cow position:
               
chr18:30900048-30900200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
81-395
               

               
Cow position:
               
chr18:54084173-54084492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chr18:34615258-34615445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
84-393
               

               
Cow position:
               
chr18:23743376-23743067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 90
               

               
Conread position:
               
87-359
               

               
Cow position:
               
chr18:55107224-55107495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
95-394
               

               
Cow position:
               
chr18:42248315-42248621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
104-394
               

               
Cow position:
               
chr18:55652806-55652513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
112-393
               

               
Cow position:
               
chr18:2698173-2697896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
112-393
               

               
Cow position:
               
chr18:43896082-43896355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chr18:27522705-27522957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
123-397
               

               
Cow position:
               
chr18:46719625-46719346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
134-391
               

               
Cow position:
               
chr18:17009580-17009320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
204-408
               

               
Cow position:
               
chr18:10118831-10118625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
217-403
               

               
Cow position:
               
chr18:16539318-16539132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
219-399
               

               
Cow position:
               
chr18:17028328-17028147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 141
               

               
Conread position:
               
239-397
               

               
Cow position:
               
chr18:224608-224766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
68-398
               

               
Cow position:
               
chr19:20391567-20391912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
79-230
               

               
Cow position:
               
chr19:4547642-4547793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
80-357
               

               
Cow position:
               
chr19:21023559-21023276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
81-256
               

               
Cow position:
               
chr19:43260743-43260568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
100, 142
               

               
Conread position:
               
82-259
               

               
Cow position:
               
chr19:41622141-41622322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr19:14705438-14705130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 30
               

               
Conread position:
               
88-289
               

               
Cow position:
               
chr19:9577907-9578116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
112-344
               

               
Cow position:
               
chr19:55319746-55319981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr19:48877817-48877536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
132-381
               

               
Cow position:
               
chr19:54933295-54933047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
175-373
               

               
Cow position:
               
chr19:20398589-20398387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
218-402
               

               
Cow position:
               
chr19:33753775-33753586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
239-339
               

               
Cow position:
               
chr19:9831307-9831208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
69-391
               

               
Cow position:
               
chr2:17827999-17827687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
69-392
               

               
Cow position:
               
chr2:23128545-23128857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
74-368
               

               
Cow position:
               
chr2:22132092-22132386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
77-399
               

               
Cow position:
               
chr2:37448684-37449026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
78-392
               

               
Cow position:
               
chr2:61078736-61078429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
79-323
               

               
Cow position:
               
chr2:62221817-62222065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr2:13853355-13853099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr2:26440878-26441145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
79-367
               

               
Cow position:
               
chr2:30186525-30186833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
79-375
               

               
Cow position:
               
chr2:31452060-31451752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
79-383
               

               
Cow position:
               
chr2:53176735-53176430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr2:54796910-54797230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
79-395
               

               
Cow position:
               
chr2:10981474-10981775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
79-398
               

               
Cow position:
               
chr2:42169630-42169946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
198, 33
               

               
Conread position:
               
80-392
               

               
Cow position:
               
chr2:8206040-8205723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
80-393
               

               
Cow position:
               
chr2:3627898-3628212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
80-398
               

               
Cow position:
               
chr2:51809033-51809358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
81-338
               

               
Cow position:
               
chr2:4694129-4693867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
160, 174
               

               
Conread position:
               
82-336
               

               
Cow position:
               
chr2:80441757-80441504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 147
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr2:1138443-1138703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
85-249
               

               
Cow position:
               
chr2:71531916-71532082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr2:85472444-85472184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
87-393
               

               
Cow position:
               
chr2:9412552-9412244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr2:66306839-66307151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr2:66155737-66155408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr2:80806139-80806444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 29
               

               
Conread position:
               
94-393
               

               
Cow position:
               
chr2:33341395-33341698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
94-395
               

               
Cow position:
               
chr2:36978149-36977843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
103-395
               

               
Cow position:
               
chr2:22618939-22618638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
217-391
               

               
Cow position:
               
chr2:35464495-35464322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
225-369
               

               
Cow position:
               
chr2:8251869-8252011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
233-398
               

               
Cow position:
               
chr2:30925338-30925174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
48-353
               

               
Cow position:
               
chr20:42034760-42035072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 118
               

               
Conread position:
               
79-222
               

               
Cow position:
               
chr20:24648564-24648708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
79-281
               

               
Cow position:
               
chr20:26458885-26459092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
80-348
               

               
Cow position:
               
chr20:19304213-19304487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
80-375
               

               
Cow position:
               
chr20:17205213-17205498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 31
               

               
Conread position:
               
80-389
               

               
Cow position:
               
chr20:41958062-41957767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
202, 120
               

               
Conread position:
               
81-342
               

               
Cow position:
               
chr20:36937440-36937712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
81-364
               

               
Cow position:
               
chr20:22694708-22694993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
82-332
               

               
Cow position:
               
chr20:28798817-28798567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
82-339
               

               
Cow position:
               
chr20:35171847-35172106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chr20:21831057-21831367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
85-395
               

               
Cow position:
               
chr20:16956513-16956842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
88-391
               

               
Cow position:
               
chr20:6446700-6447010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
88-401
               

               
Cow position:
               
chr20:28021413-28021093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 253
               

               
Conread position:
               
104-380
               

               
Cow position:
               
chr20:25584549-25584820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr20:7272592-7272396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr20:21260478-21260769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
136-391
               

               
Cow position:
               
chr20:39042992-39043237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
160-368
               

               
Cow position:
               
chr20:767925-768143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
169-385
               

               
Cow position:
               
chr20:21153056-21153268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
110, 74
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr20:27313856-27314054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
213-398
               

               
Cow position:
               
chr20:22651664-22651477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
235-430
               

               
Cow position:
               
chr20:22034222-22034026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 126
               

               
Conread position:
               
284-390
               

               
Cow position:
               
chr20:1745618-1745509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr21:30191829-30192132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
78-302
               

               
Cow position:
               
chr21:8718986-8719217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
78-397
               

               
Cow position:
               
chr21:12576308-12575987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 196
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr21:30203225-30202904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 216
               

               
Conread position:
               
81-332
               

               
Cow position:
               
chr21:39884363-39884101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
81-376
               

               
Cow position:
               
chr21:35028727-35029035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
84-403
               

               
Cow position:
               
chr21:21225672-21225365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
195, 32
               

               
Conread position:
               
87-339
               

               
Cow position:
               
chr21:11444741-11444486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
87-372
               

               
Cow position:
               
chr21:28731246-28730935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
88-371
               

               
Cow position:
               
chr21:41458113-41458408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
88-394
               

               
Cow position:
               
chr21:18047773-18048077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
89-373
               

               
Cow position:
               
chr21:5878604-5878898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
91-373
               

               
Cow position:
               
chr21:40526461-40526754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
125-399
               

               
Cow position:
               
chr21:41728576-41728865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
126-393
               

               
Cow position:
               
chr21:5467800-5467535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chr21:16898634-16898875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
165-397
               

               
Cow position:
               
chr21:34895442-34895219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
184-391
               

               
Cow position:
               
chr21:12560203-12560410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
222-395
               

               
Cow position:
               
chr21:42392177-42392004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
239-398
               

               
Cow position:
               
chr21:11421040-11420882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
72-373
               

               
Cow position:
               
chr22:45278310-45278608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
78-390
               

               
Cow position:
               
chr22:9616204-9615878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr22:20911990-20912307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr22:29822389-29822080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
80-368
               

               
Cow position:
               
chr22:21203865-21204162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 179
               

               
Conread position:
               
81-370
               

               
Cow position:
               
chr22:7111401-7111092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr22:22046209-22045903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
83-395
               

               
Cow position:
               
chr22:3333286-3332963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
85-299
               

               
Cow position:
               
chr22:44414781-44414988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 130
               

               
Conread position:
               
86-399
               

               
Cow position:
               
chr22:31418175-31417842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
94-361
               

               
Cow position:
               
chr22:13998020-13997750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
122-333
               

               
Cow position:
               
chr22:14027777-14027989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
122-382
               

               
Cow position:
               
chr22:40134696-40134953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
125-405
               

               
Cow position:
               
chr22:6013921-6014204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
173-390
               

               
Cow position:
               
chr22:15646128-15645905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 177
               

               
Conread position:
               
181-391
               

               
Cow position:
               
chr22:8594904-8594692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
183-376
               

               
Cow position:
               
chr22:29447357-29447555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr22:17892135-17892290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 63
               

               
Conread position:
               
226-389
               

               
Cow position:
               
chr22:305103-304936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
60-341
               

               
Cow position:
               
chr23:25553281-25552992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
78-395
               

               
Cow position:
               
chr23:13637637-13637962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
78-397
               

               
Cow position:
               
chr23:2451996-2451678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
79-257
               

               
Cow position:
               
chr23:19916165-19915988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
79-361
               

               
Cow position:
               
chr23:37639242-37639525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
79-370
               

               
Cow position:
               
chr23:663094-663381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
79-383
               

               
Cow position:
               
chr23:4284097-4284399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr23:28387767-28387490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
82-394
               

               
Cow position:
               
chr23:30551471-30551783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
82-434
               

               
Cow position:
               
chr23:36217204-36217565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
84-397
               

               
Cow position:
               
chr23:10376601-10376916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
95-397
               

               
Cow position:
               
chr23:777692-777997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
104-387
               

               
Cow position:
               
chr23:5418904-5418618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
146-394
               

               
Cow position:
               
chr23:8283590-8283332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
188-395
               

               
Cow position:
               
chr23:12036651-12036443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
196-371
               

               
Cow position:
               
chr23:12904034-12903857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
210-399
               

               
Cow position:
               
chr23:40712827-40712631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
214-402
               

               
Cow position:
               
chr23:14642050-14642243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
238-390
               

               
Cow position:
               
chr23:2726638-2726484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
72-277
               

               
Cow position:
               
chr24:44588155-44587942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 191
               

               
Conread position:
               
72-333
               

               
Cow position:
               
chr24:18416492-18416763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
79-298
               

               
Cow position:
               
chr24:122142-122365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
79-387
               

               
Cow position:
               
chr24:18793700-18793388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
81-227
               

               
Cow position:
               
chr24:25503911-25503764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
81-381
               

               
Cow position:
               
chr24:19614889-19614595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
81-395
               

               
Cow position:
               
chr24:3845508-3845192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
81-399
               

               
Cow position:
               
chr24:33579684-33579374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
85-399
               

               
Cow position:
               
chr24:29041095-29040778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
86-398
               

               
Cow position:
               
chr24:26574794-26574470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr24:3674514-3674214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
89-387
               

               
Cow position:
               
chr24:31421084-31420785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 248
               

               
Conread position:
               
89-399
               

               
Cow position:
               
chr24:14514484-14514792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
96-360
               

               
Cow position:
               
chr24:40638946-40638674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
111-395
               

               
Cow position:
               
chr24:28060245-28060529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
146-395
               

               
Cow position:
               
chr24:33526170-33526425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
152-404
               

               
Cow position:
               
chr24:9775770-9776017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr24:35653500-35653320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 109
               

               
Conread position:
               
239-390
               

               
Cow position:
               
chr24:10761028-10760878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
243-394
               

               
Cow position:
               
chr24:5944740-5944894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
53-320
               

               
Cow position:
               
chr25:12494552-12494819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
55-394
               

               
Cow position:
               
chr25:11962441-11962094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
70-327
               

               
Cow position:
               
chr25:16858553-16858813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
74-395
               

               
Cow position:
               
chr25:11849443-11849771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
75-391
               

               
Cow position:
               
chr25:29309494-29309172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 251
               

               
Conread position:
               
76-342
               

               
Cow position:
               
chr25:36632467-36632720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
79-386
               

               
Cow position:
               
chr25:31676979-31676674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
174, 38
               

               
Conread position:
               
79-395
               

               
Cow position:
               
chr25:17418123-17418431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr25:31515819-31515491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
35, 285
               

               
Conread position:
               
80-304
               

               
Cow position:
               
chr25:3687248-3687021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
82-333
               

               
Cow position:
               
chr25:4078731-4078482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
82-395
               

               
Cow position:
               
chr25:21960760-21961077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
91-329
               

               
Cow position:
               
chr25:41052234-41051991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
96-387
               

               
Cow position:
               
chr25:12063432-12063716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
96-394
               

               
Cow position:
               
chr25:33094587-33094292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
111-395
               

               
Cow position:
               
chr25:16578159-16578446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
114, 135
               

               
Conread position:
               
127-315
               

               
Cow position:
               
chr25:20249474-20249278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
146-399
               

               
Cow position:
               
chr25:14959517-14959772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
231-384
               

               
Cow position:
               
chr25:41104112-41104264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
65-305
               

               
Cow position:
               
chr26:6649432-6649669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
78-373
               

               
Cow position:
               
chr26:11793636-11793338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
78-383
               

               
Cow position:
               
chr26:7330006-7329711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr26:13008604-13008922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
80-376
               

               
Cow position:
               
chr26:16885010-16884711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
94, 189
               

               
Conread position:
               
80-399
               

               
Cow position:
               
chr26:9822815-9823132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
81-385
               

               
Cow position:
               
chr26:26665481-26665789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 166
               

               
Conread position:
               
82-386
               

               
Cow position:
               
chr26:19537791-19537482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
84-380
               

               
Cow position:
               
chr26:29315322-29315017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
86-294
               

               
Cow position:
               
chr26:13026972-13027182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
87-371
               

               
Cow position:
               
chr26:19101965-19101682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
87-383
               

               
Cow position:
               
chr26:7171710-7172009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
88-361
               

               
Cow position:
               
chr26:4260686-4260961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
89-398
               

               
Cow position:
               
chr26:2724827-2725123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
98-357
               

               
Cow position:
               
chr26:11304398-11304137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
112-386
               

               
Cow position:
               
chr26:15514795-15515064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
112-398
               

               
Cow position:
               
chr26:15894022-15893746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr26:2462505-2462280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
124-399
               

               
Cow position:
               
chr26:11331461-11331188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
125-399
               

               
Cow position:
               
chr26:27702094-27701820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
152-394
               

               
Cow position:
               
chr26:26158498-26158256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chr26:428779-429022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 161
               

               
Conread position:
               
182-367
               

               
Cow position:
               
chr26:21466460-21466648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
187-398
               

               
Cow position:
               
chr26:14428984-14429201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
194-373
               

               
Cow position:
               
chr26:3526985-3526798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
198-389
               

               
Cow position:
               
chr26:9641512-9641314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
221-395
               

               
Cow position:
               
chr26:23566621-23566447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
71-316
               

               
Cow position:
               
chr27:4932648-4932393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
77-395
               

               
Cow position:
               
chr27:1087943-1088269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr27:26349261-26348945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
80-320
               

               
Cow position:
               
chr27:16623435-16623672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
81-267
               

               
Cow position:
               
chr27:21239285-21239478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
82-374
               

               
Cow position:
               
chr27:2852141-2851848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
182-395
               

               
Cow position:
               
chr27:23984265-23984477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
225-385
               

               
Cow position:
               
chr27:10145719-10145875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
238-395
               

               
Cow position:
               
chr27:15632276-15632434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
240-399
               

               
Cow position:
               
chr27:951975-951815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
255-384
               

               
Cow position:
               
chr27:9253842-9253973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
66-210
               

               
Cow position:
               
chr28:15971894-15972039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr28:28600657-28600330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
67-395
               

               
Cow position:
               
chr28:30390276-30390606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
69-243
               

               
Cow position:
               
chr28:19216794-19216614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
72-399
               

               
Cow position:
               
chr28:7656668-7656341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
79-390
               

               
Cow position:
               
chr28:11543194-11543504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr28:14651887-14651568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chr28:25307245-25306943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
82-394
               

               
Cow position:
               
chr28:15372692-15372394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
85-319
               

               
Cow position:
               
chr28:15516833-15517060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chr28:20037010-20036703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
149, 106
               

               
Conread position:
               
95-363
               

               
Cow position:
               
chr28:22202400-22202128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
100-321
               

               
Cow position:
               
chr28:15724963-15725190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
73, 150
               

               
Conread position:
               
124-402
               

               
Cow position:
               
chr28:23112163-23111872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr28:24330236-24330467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
135-390
               

               
Cow position:
               
chr28:22440435-22440173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 150
               

               
Conread position:
               
152-389
               

               
Cow position:
               
chr28:21366674-21366919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
186-354
               

               
Cow position:
               
chr28:14555685-14555512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
196-395
               

               
Cow position:
               
chr28:28721463-28721258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
254-397
               

               
Cow position:
               
chr28:16700134-16699989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
65-399
               

               
Cow position:
               
chr29:24615683-24615354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
73-361
               

               
Cow position:
               
chr29:24778603-24778893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr29:29137913-29138232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr29:40548033-40547729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
80-399
               

               
Cow position:
               
chr29:9852094-9852426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
81-387
               

               
Cow position:
               
chr29:7828177-7828488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr29:33010076-33009807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
82-390
               

               
Cow position:
               
chr29:37709719-37710007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 27
               

               
Conread position:
               
82-395
               

               
Cow position:
               
chr29:4890344-4890663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
83-394
               

               
Cow position:
               
chr29:18692844-18693155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr29:22247341-22247662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
94-315
               

               
Cow position:
               
chr29:14601792-14601559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
101-357
               

               
Cow position:
               
chr29:21263235-21263491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
126-297
               

               
Cow position:
               
chr29:3185340-3185510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
150, 54
               

               
Conread position:
               
135-396
               

               
Cow position:
               
chr29:36037039-36037301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
140-399
               

               
Cow position:
               
chr29:23908890-23908622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 147
               

               
Conread position:
               
144-393
               

               
Cow position:
               
chr29:6013949-6013696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
153-387
               

               
Cow position:
               
chr29:26423660-26423903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
74, 216
               

               
Conread position:
               
215-391
               

               
Cow position:
               
chr29:18719867-18720046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
217-399
               

               
Cow position:
               
chr29:4221502-4221317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
220-393
               

               
Cow position:
               
chr29:38620543-38620718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
249-385
               

               
Cow position:
               
chr29:4261460-4261323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
65-331
               

               
Cow position:
               
chr3:41316521-41316239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 272
               

               
Conread position:
               
68-357
               

               
Cow position:
               
chr3:24646454-24646157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr3:80138508-80138827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
75-353
               

               
Cow position:
               
chr3:64184977-64184690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
77-355
               

               
Cow position:
               
chr3:1750700-1750400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
79-305
               

               
Cow position:
               
chr3:16867601-16867824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
79-341
               

               
Cow position:
               
chr3:78171705-78171967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr3:37288971-37289290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
32, 241
               

               
Conread position:
               
79-394
               

               
Cow position:
               
chr3:13259235-13259550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
81-296
               

               
Cow position:
               
chr3:42137184-42136967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
81-364
               

               
Cow position:
               
chr3:37106435-37106723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
81-375
               

               
Cow position:
               
chr3:30788608-30788904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
81-389
               

               
Cow position:
               
chr3:54779636-54779335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 135
               

               
Conread position:
               
82-367
               

               
Cow position:
               
chr3:71514593-71514868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
82-402
               

               
Cow position:
               
chr3:40658798-40659120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
84-399
               

               
Cow position:
               
chr3:34463925-34464255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr3:19559692-19559974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
89-384
               

               
Cow position:
               
chr3:26659086-26659378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
94-366
               

               
Cow position:
               
chr3:6188813-6188535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
94-416
               

               
Cow position:
               
chr3:35145035-35144715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
95-392
               

               
Cow position:
               
chr3:31924379-31924675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
96-339
               

               
Cow position:
               
chr3:6092347-6092602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
97-357
               

               
Cow position:
               
chr3:41157116-41157377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
101-339
               

               
Cow position:
               
chr3:40853270-40853031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
109-365
               

               
Cow position:
               
chr3:16169804-16170062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
112-274
               

               
Cow position:
               
chr3:8852664-8852501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
112-390
               

               
Cow position:
               
chr3:73813045-73812749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
116-399
               

               
Cow position:
               
chr3:2054558-2054276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
121-407
               

               
Cow position:
               
chr3:76931140-76931445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 208
               

               
Conread position:
               
124-394
               

               
Cow position:
               
chr3:24846372-24846096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
132-381
               

               
Cow position:
               
chr3:56565643-56565391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
135-397
               

               
Cow position:
               
chr3:25803353-25803083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
141-357
               

               
Cow position:
               
chr3:11790300-11790074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
158-395
               

               
Cow position:
               
chr3:1350245-1350013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
159-399
               

               
Cow position:
               
chr3:36182763-36183001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
188-390
               

               
Cow position:
               
chr3:18855873-18855674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
213-398
               

               
Cow position:
               
chr3:4504481-4504661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
223-406
               

               
Cow position:
               
chr3:4555557-4555739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 138
               

               
Conread position:
               
224-403
               

               
Cow position:
               
chr3:3283174-3283353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
235-373
               

               
Cow position:
               
chr3:48498618-48498757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr4:5499501-5499170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
66-392
               

               
Cow position:
               
chr4:54106930-54107255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
72-387
               

               
Cow position:
               
chr4:58195001-58194684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
75-319
               

               
Cow position:
               
chr4:44737922-44737667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
78-382
               

               
Cow position:
               
chr4:13919842-13920151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr4:7584370-7584049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
79-364
               

               
Cow position:
               
chr4:34535090-34535354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
79-383
               

               
Cow position:
               
chr4:38938614-38938905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr4:7879080-7879375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
80-377
               

               
Cow position:
               
chr4:53970569-53970268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
81-372
               

               
Cow position:
               
chr4:30815328-30815033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
81-390
               

               
Cow position:
               
chr4:3245232-3244923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
81-399
               

               
Cow position:
               
chr4:5557571-5557238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
33, 101
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr4:30489025-30488717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
82-395
               

               
Cow position:
               
chr4:46280320-46280635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
83-373
               

               
Cow position:
               
chr4:42365981-42366265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
88-256
               

               
Cow position:
               
chr4:59613712-59613546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 103
               

               
Conread position:
               
88-294
               

               
Cow position:
               
chr4:31599376-31599166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
88-348
               

               
Cow position:
               
chr4:10579470-10579206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
91-373
               

               
Cow position:
               
chr4:48504069-48503789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 171
               

               
Conread position:
               
94-383
               

               
Cow position:
               
chr4:44683935-44684223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
95-376
               

               
Cow position:
               
chr4:33294771-33295051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
97-388
               

               
Cow position:
               
chr4:7334158-7333861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
99-381
               

               
Cow position:
               
chr4:46151221-46151511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr4:40364696-40364927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
112-390
               

               
Cow position:
               
chr4:30049033-30048761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 81
               

               
Conread position:
               
119-370
               

               
Cow position:
               
chr4:21570882-21571143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
78, 64
               

               
Conread position:
               
125-401
               

               
Cow position:
               
chr4:20291217-20290939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
140-384
               

               
Cow position:
               
chr4:52013509-52013267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
141-395
               

               
Cow position:
               
chr4:29037483-29037226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
159-321
               

               
Cow position:
               
chr4:8188681-8188843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 6
               

               
Conread position:
               
219-398
               

               
Cow position:
               
chr4:5916285-5916107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
224-375
               

               
Cow position:
               
chr4:59884190-59884345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
243-399
               

               
Cow position:
               
chr4:32813417-32813576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
249-407
               

               
Cow position:
               
chr4:32838430-32838589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
73-326
               

               
Cow position:
               
chr5:57950795-57951040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr5:13555998-13555737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
77-395
               

               
Cow position:
               
chr5:8985423-8985744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 136
               

               
Conread position:
               
79-346
               

               
Cow position:
               
chr5:9675283-9675557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
80-285
               

               
Cow position:
               
chr5:60902498-60902277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
80-363
               

               
Cow position:
               
chr5:11954049-11954321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
82-347
               

               
Cow position:
               
chr5:38927081-38927354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
82-399
               

               
Cow position:
               
chr5:41651888-41652210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
83-210
               

               
Cow position:
               
chr5:47744002-47743873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
83-230
               

               
Cow position:
               
chr5:15616831-15616976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
83-393
               

               
Cow position:
               
chr5:13940748-13941065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 90
               

               
Conread position:
               
85-259
               

               
Cow position:
               
chr5:28881161-28880980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
85-395
               

               
Cow position:
               
chr5:22648427-22648106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 13
               

               
Conread position:
               
87-395
               

               
Cow position:
               
chr5:34565426-34565740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
88-372
               

               
Cow position:
               
chr5:49133768-49133484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
88-391
               

               
Cow position:
               
chr5:64793978-64793668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
89-365
               

               
Cow position:
               
chr5:32058549-32058265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
89-387
               

               
Cow position:
               
chr5:56273748-56274050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
95-366
               

               
Cow position:
               
chr5:45567576-45567300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
96-367
               

               
Cow position:
               
chr5:55686100-55685826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
99-385
               

               
Cow position:
               
chr5:46756126-46755835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
104-319
               

               
Cow position:
               
chr5:70868234-70868016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chr5:48834324-48834039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
119-231
               

               
Cow position:
               
chr5:19360913-19360801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-384
               

               
Cow position:
               
chr5:59510500-59510232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
125-331
               

               
Cow position:
               
chr5:29570770-29570973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
127-383
               

               
Cow position:
               
chr5:35262690-35262431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
188-395
               

               
Cow position:
               
chr5:12840328-12840539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
188-399
               

               
Cow position:
               
chr5:38380317-38380102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
194-392
               

               
Cow position:
               
chr5:66166946-66166747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
213-375
               

               
Cow position:
               
chr5:23722704-23722868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
217-383
               

               
Cow position:
               
chr5:60187024-60186858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 162
               

               
Conread position:
               
218-403
               

               
Cow position:
               
chr5:35708212-35708399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 145
               

               
Conread position:
               
227-397
               

               
Cow position:
               
chr5:61354741-61354913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
257-386
               

               
Cow position:
               
chr5:28878992-28878861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
66-392
               

               
Cow position:
               
chr6:6055054-6054728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
71-368
               

               
Cow position:
               
chr6:55387624-55387322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
76-401
               

               
Cow position:
               
chr6:45923913-45923599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
78-395
               

               
Cow position:
               
chr6:6124511-6124187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
78-395
               

               
Cow position:
               
chr6:22804079-22804392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
79-287
               

               
Cow position:
               
chr6:31941949-31941729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
79-394
               

               
Cow position:
               
chr6:17739735-17740061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
79-395
               

               
Cow position:
               
chr6:52188516-52188854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr6:14936059-14935754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr6:56091209-56090882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-361
               

               
Cow position:
               
chr6:12976898-12976604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
81-370
               

               
Cow position:
               
chr6:20407192-20406890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 212
               

               
Conread position:
               
81-398
               

               
Cow position:
               
chr6:2404478-2404812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 310
               

               
Conread position:
               
81-402
               

               
Cow position:
               
chr6:19441149-19440828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
82-228
               

               
Cow position:
               
chr6:69190482-69190336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr6:27991958-27992229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
82-380
               

               
Cow position:
               
chr6:36263895-36264186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
83-376
               

               
Cow position:
               
chr6:15664928-15665224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
83-395
               

               
Cow position:
               
chr6:22193100-22193417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
87-399
               

               
Cow position:
               
chr6:35120986-35121296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
88-380
               

               
Cow position:
               
chr6:19748228-19748540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
94-387
               

               
Cow position:
               
chr6:16236431-16236732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
95-361
               

               
Cow position:
               
chr6:6164944-6164668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
100-390
               

               
Cow position:
               
chr6:19144700-19144990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
101-340
               

               
Cow position:
               
chr6:47215336-47215097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
103-395
               

               
Cow position:
               
chr6:54924184-54924477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
105-349
               

               
Cow position:
               
chr6:66360659-66360416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
110-299
               

               
Cow position:
               
chr6:20813082-20813277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
118-391
               

               
Cow position:
               
chr6:43764086-43763798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 156
               

               
Conread position:
               
124-390
               

               
Cow position:
               
chr6:30499392-30499121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
126-383
               

               
Cow position:
               
chr6:38382797-38383061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 169
               

               
Conread position:
               
157-393
               

               
Cow position:
               
chr6:46250454-46250694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr6:17627274-17627514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr6:64254859-64254704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 123
               

               
Conread position:
               
236-390
               

               
Cow position:
               
chr6:8930953-8931108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
66-395
               

               
Cow position:
               
chr7:29623144-29622821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
52, 180
               

               
Conread position:
               
73-336
               

               
Cow position:
               
chr7:37743520-37743791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
79-297
               

               
Cow position:
               
chr7:65371174-65370946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 140
               

               
Conread position:
               
79-367
               

               
Cow position:
               
chr7:57536288-57536006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr7:9585719-9586041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
80-291
               

               
Cow position:
               
chr7:97403-97632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr7:11442281-11441977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
81-373
               

               
Cow position:
               
chr7:35302894-35302609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
82-364
               

               
Cow position:
               
chr7:35181515-35181236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr7:10762866-10762603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr7:49893067-49893369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
88-397
               

               
Cow position:
               
chr7:26180473-26180788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
89-263
               

               
Cow position:
               
chr7:47069838-47070009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
102-399
               

               
Cow position:
               
chr7:12336516-12336817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
109-407
               

               
Cow position:
               
chr7:58995987-58995683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
125-398
               

               
Cow position:
               
chr7:12406955-12406683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
127-399
               

               
Cow position:
               
chr7:18667754-18667477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 134
               

               
Conread position:
               
141-399
               

               
Cow position:
               
chr7:40632796-40632542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
144-373
               

               
Cow position:
               
chr7:48751360-48751595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
145-389
               

               
Cow position:
               
chr7:22341572-22341813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
194-386
               

               
Cow position:
               
chr7:34218055-34218254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr7:19604126-19604288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
243-402
               

               
Cow position:
               
chr7:39599980-39600142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 151
               

               
Conread position:
               
254-399
               

               
Cow position:
               
chr7:3809467-3809323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
55-373
               

               
Cow position:
               
chr8:41411831-41411523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
70-361
               

               
Cow position:
               
chr8:42818126-42817834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
75-382
               

               
Cow position:
               
chr8:16757139-16757451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
76-336
               

               
Cow position:
               
chr8:25378515-25378770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
78-397
               

               
Cow position:
               
chr8:42120006-42120327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
79-387
               

               
Cow position:
               
chr8:18908376-18908069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr8:24476851-24477166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
79-396
               

               
Cow position:
               
chr8:51442977-51443294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
80-336
               

               
Cow position:
               
chr8:46280146-46279882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
80-361
               

               
Cow position:
               
chr8:42135111-42135377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
80-387
               

               
Cow position:
               
chr8:55092197-55091883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
80-390
               

               
Cow position:
               
chr8:54157270-54156970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
104, 93
               

               
Conread position:
               
80-395
               

               
Cow position:
               
chr8:9314334-9314017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
80-398
               

               
Cow position:
               
chr8:27558110-27558427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
156, 93
               

               
Conread position:
               
81-395
               

               
Cow position:
               
chr8:26877725-26877396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
82-325
               

               
Cow position:
               
chr8:4285587-4285836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
82-353
               

               
Cow position:
               
chr8:11860478-11860757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
146, 35
               

               
Conread position:
               
82-390
               

               
Cow position:
               
chr8:23329641-23329332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
84-311
               

               
Cow position:
               
chr8:18387373-18387622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
85-378
               

               
Cow position:
               
chr8:7546706-7547006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 194
               

               
Conread position:
               
85-387
               

               
Cow position:
               
chr8:60323982-60324283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
85-391
               

               
Cow position:
               
chr8:15516387-15516079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
88-395
               

               
Cow position:
               
chr8:37691900-37691580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
88-399
               

               
Cow position:
               
chr8:36608468-36608787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
95-383
               

               
Cow position:
               
chr8:59472608-59472898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
95-401
               

               
Cow position:
               
chr8:21946001-21945687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
112-395
               

               
Cow position:
               
chr8:49684391-49684102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr8:41939431-41939694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 155
               

               
Conread position:
               
122-341
               

               
Cow position:
               
chr8:32174055-32173834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
125-399
               

               
Cow position:
               
chr8:8723893-8724174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
128-392
               

               
Cow position:
               
chr8:25157207-25156937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
146-395
               

               
Cow position:
               
chr8:34662909-34662651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
155-392
               

               
Cow position:
               
chr8:21813764-21813992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr8:13559888-13559666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chr8:27501315-27501511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
213-391
               

               
Cow position:
               
chr8:27076341-27076514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr8:22519146-22518967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
217-402
               

               
Cow position:
               
chr8:10994105-10994294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
218-397
               

               
Cow position:
               
chr8:23877218-23877401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
235-399
               

               
Cow position:
               
chr8:27534348-27534514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
236-395
               

               
Cow position:
               
chr8:33062040-33061878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 142
               

               
Conread position:
               
239-395
               

               
Cow position:
               
chr8:10844459-10844613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
52-395
               

               
Cow position:
               
chr9:44445942-44446299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
58, 108
               

               
Conread position:
               
64-326
               

               
Cow position:
               
chr9:7054443-7054178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
75-356
               

               
Cow position:
               
chr9:35224386-35224674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 104
               

               
Conread position:
               
77-340
               

               
Cow position:
               
chr9:43076606-43076333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
39, 166
               

               
Conread position:
               
79-396
               

               
Cow position:
               
chr9:39727281-39727609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
81-284
               

               
Cow position:
               
chr9:50777508-50777293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
81-393
               

               
Cow position:
               
chr9:18767540-18767853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
81-399
               

               
Cow position:
               
chr9:39742046-39742355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
85-397
               

               
Cow position:
               
chr9:11045537-11045854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chr9:27961351-27961637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
89-399
               

               
Cow position:
               
chr9:53574576-53574274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
95-386
               

               
Cow position:
               
chr9:9579422-9579122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
97-361
               

               
Cow position:
               
chr9:22939924-22940179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
112-337
               

               
Cow position:
               
chr9:39002182-39002415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
112-386
               

               
Cow position:
               
chr9:7328053-7327788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
116-392
               

               
Cow position:
               
chr9:51335681-51335414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
122-396
               

               
Cow position:
               
chr9:33078510-33078226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
128-308
               

               
Cow position:
               
chr9:26479847-26480023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
143-395
               

               
Cow position:
               
chr9:6389434-6389693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
40, 189
               

               
Conread position:
               
165-392
               

               
Cow position:
               
chr9:48373874-48374108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
210-361
               

               
Cow position:
               
chr9:31540330-31540174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
216-387
               

               
Cow position:
               
chr9:43536907-43537078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
233-394
               

               
Cow position:
               
chr9:23108070-23107911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
248-400
               

               
Cow position:
               
chr9:36839075-36838923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
100, 141
               

               
Conread position:
               
66-338
               

               
Cow position:
               
chrX:18231107-18231381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
76-398
               

               
Cow position:
               
chrX:807494-807174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
78-387
               

               
Cow position:
               
chrX:18469322-18469011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
79-373
               

               
Cow position:
               
chrX:1791400-1791090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
79-386
               

               
Cow position:
               
chrX:20715624-20715936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
79-395
               

               
Cow position:
               
chrX:9298580-9298889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chrX:4319236-4319089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chrX:32049569-32049296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
81-391
               

               
Cow position:
               
chrX:33816443-33816131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
82-392
               

               
Cow position:
               
chrX:42219158-42218843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
82-395
               

               
Cow position:
               
chrX:22013719-22013394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
83-368
               

               
Cow position:
               
chrX:20734772-20734477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
87-381
               

               
Cow position:
               
chrX:28215719-28215439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
87-395
               

               
Cow position:
               
chrX:38114473-38114161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
94-360
               

               
Cow position:
               
chrX:17200996-17200722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
94-400
               

               
Cow position:
               
chrX:37139896-37139585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 204
               

               
Conread position:
               
95-301
               

               
Cow position:
               
chrX:21262393-21262596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
184, 21
               

               
Conread position:
               
95-400
               

               
Cow position:
               
chrX:10462913-10462600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chrX:6834506-6834719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
96-368
               

               
Cow position:
               
chrX:2649829-2650109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
102-395
               

               
Cow position:
               
chrX:10763019-10763299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
109-383
               

               
Cow position:
               
chrX:8827271-8827547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chrX:4298577-4298864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chrX:22859847-22859552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 10
               

               
Conread position:
               
112-403
               

               
Cow position:
               
chrX:32181775-32182067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 126
               

               
Conread position:
               
114-397
               

               
Cow position:
               
chrX:16300459-16300741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
120-325
               

               
Cow position:
               
chrX:24019894-24020093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
159, 98
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chrX:7693221-7693488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
141-394
               

               
Cow position:
               
chrX:25164029-25163775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
143-368
               

               
Cow position:
               
chrX:263582-263813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
159-339
               

               
Cow position:
               
chrX:41483817-41483631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
197-354
               

               
Cow position:
               
chrX:24525163-24525002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
218-401
               

               
Cow position:
               
chrX:37067488-37067303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
63, 151
               

               
Conread position:
               
254-385
               

               
Cow position:
               
chrX:24560144-24560012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
258-395
               

               
Cow position:
               
chrX:12716159-12716026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 108