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Cow genome map

           
Conread name:
           
Ss1.1-Emb1-C0005178_H07.5
        

               
Conread position:
               
15-541
               

               
Cow position:
               
chr10:13375231-13374718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
206, 127
               

               
Conread position:
               
55-708
               

               
Cow position:
               
chr10:19143872-19143175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr10:37769304-37769984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr10:62409373-62408694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
141-706
               

               
Cow position:
               
chr10:2422205-2421647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
143-706
               

               
Cow position:
               
chr10:41352187-41351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
247-706
               

               
Cow position:
               
chr10:58860998-58860520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
342-707
               

               
Cow position:
               
chr10:3381732-3382096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
463-708
               

               
Cow position:
               
chr10:38847279-38847521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr11:2725012-2725253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
2-704
               

               
Cow position:
               
chr11:45547587-45548270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 12
               

               
Conread position:
               
2-708
               

               
Cow position:
               
chr11:13581908-13581188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 80
               

               
Conread position:
               
14-626
               

               
Cow position:
               
chr11:30157836-30157225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
33-674
               

               
Cow position:
               
chr11:28072857-28073490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 95
               

               
Conread position:
               
33-708
               

               
Cow position:
               
chr11:35257473-35256795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr11:71328762-71329445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
69-691
               

               
Cow position:
               
chr11:42361376-42361981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
244, 59
               

               
Conread position:
               
107-706
               

               
Cow position:
               
chr11:21882941-21882300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr11:41171515-41170891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
170-697
               

               
Cow position:
               
chr11:35389551-35388997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr11:85394468-85394010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
326-708
               

               
Cow position:
               
chr11:21466477-21466878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 165
               

               
Conread position:
               
327-707
               

               
Cow position:
               
chr11:25526983-25527359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 155
               

               
Conread position:
               
328-708
               

               
Cow position:
               
chr11:44861122-44860728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 163
               

               
Conread position:
               
332-688
               

               
Cow position:
               
chr11:37492237-37491868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
95, 154
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr12:16292690-16292880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr12:42860412-42859739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr12:11097690-11098330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
221-708
               

               
Cow position:
               
chr12:16293493-16294017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
481-708
               

               
Cow position:
               
chr12:28766166-28765931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
2-610
               

               
Cow position:
               
chr13:21600764-21601369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
23-704
               

               
Cow position:
               
chr13:23410829-23410141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
55-364
               

               
Cow position:
               
chr13:2321664-2321981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr13:34043180-34042502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
143-708
               

               
Cow position:
               
chr13:4940356-4940955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
143-708
               

               
Cow position:
               
chr13:32738537-32737955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
270-707
               

               
Cow position:
               
chr13:30657554-30657108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 221
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr13:34187281-34186818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
328-708
               

               
Cow position:
               
chr13:2908975-2908583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
438-708
               

               
Cow position:
               
chr13:34387844-34387565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
541-708
               

               
Cow position:
               
chr13:22697067-22697236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
2-620
               

               
Cow position:
               
chr14:31175180-31175804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
23-410
               

               
Cow position:
               
chr14:38309525-38309125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
108, 260
               

               
Conread position:
               
60-541
               

               
Cow position:
               
chr14:25135326-25135793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
150, 93
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr14:17001990-17001311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr14:22032574-22031944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
143-708
               

               
Cow position:
               
chr14:37223049-37223645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
149-708
               

               
Cow position:
               
chr14:5528217-5528805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
157-706
               

               
Cow position:
               
chr14:45712807-45712245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
199-708
               

               
Cow position:
               
chr14:27993074-27992565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
220-676
               

               
Cow position:
               
chr14:48150719-48150243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 206
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr14:28994572-28994111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
331-708
               

               
Cow position:
               
chr14:36967607-36967998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
435-708
               

               
Cow position:
               
chr14:7831076-7830797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
436-708
               

               
Cow position:
               
chr14:44422020-44422297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
547-706
               

               
Cow position:
               
chr14:44261511-44261352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
2-583
               

               
Cow position:
               
chr15:33197328-33196763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
295, 37
               

               
Conread position:
               
33-484
               

               
Cow position:
               
chr15:47770408-47770856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
33-707
               

               
Cow position:
               
chr15:35578947-35578287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
57-568
               

               
Cow position:
               
chr15:20245331-20244806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
63-708
               

               
Cow position:
               
chr15:689889-690535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
158-708
               

               
Cow position:
               
chr15:21960685-21961252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
220-659
               

               
Cow position:
               
chr15:5955238-5954798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
189, 88
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr15:42490490-42490948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
324-708
               

               
Cow position:
               
chr15:45886147-45886534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 165
               

               
Conread position:
               
38-708
               

               
Cow position:
               
chr16:25340666-25341362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr16:29045744-29046419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
88-372
               

               
Cow position:
               
chr16:36355859-36355570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
106-708
               

               
Cow position:
               
chr16:15491473-15492105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
143-708
               

               
Cow position:
               
chr16:8817303-8816707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
158-693
               

               
Cow position:
               
chr16:26518185-26517628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 239
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr16:27734867-27734406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
464-674
               

               
Cow position:
               
chr16:4366312-4366517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr17:18326000-18325732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
55-708
               

               
Cow position:
               
chr17:13857459-13856794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 8
               

               
Conread position:
               
63-708
               

               
Cow position:
               
chr17:11088404-11087749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
105-706
               

               
Cow position:
               
chr17:18849056-18849671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
113, 49
               

               
Conread position:
               
270-707
               

               
Cow position:
               
chr17:4163758-4163314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr17:3643321-3642861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr17:13929188-13929643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
490-708
               

               
Cow position:
               
chr17:18027008-18026782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr18:29748366-29748010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
177, 157
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr18:33297434-33297843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
4-687
               

               
Cow position:
               
chr18:24577677-24576981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 6
               

               
Conread position:
               
9-404
               

               
Cow position:
               
chr18:5653298-5653709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
14-706
               

               
Cow position:
               
chr18:29069751-29070426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
28-706
               

               
Cow position:
               
chr18:20832352-20833020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
30-399
               

               
Cow position:
               
chr18:25992819-25993201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
187, 122
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr18:41841328-41840642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr18:28974354-28973720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr18:23797218-23797830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
121-708
               

               
Cow position:
               
chr18:29899889-29900488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
139-708
               

               
Cow position:
               
chr18:43147332-43146743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr18:14415701-14416159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 181
               

               
Conread position:
               
311-708
               

               
Cow position:
               
chr18:16533751-16534161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
328-708
               

               
Cow position:
               
chr18:48221662-48222062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
331-708
               

               
Cow position:
               
chr18:2019891-2019503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
332-705
               

               
Cow position:
               
chr18:40695997-40695613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 223
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr18:33358656-33359049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr18:39748370-39748761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
2-645
               

               
Cow position:
               
chr19:26984487-26983847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 38
               

               
Conread position:
               
10-213
               

               
Cow position:
               
chr19:9118550-9118352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
54-570
               

               
Cow position:
               
chr19:29390612-29391127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
58-706
               

               
Cow position:
               
chr19:33326228-33326894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
83, 313
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr19:894059-893428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
66-674
               

               
Cow position:
               
chr19:10517566-10516955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 52
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr19:55078296-55078933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
131-705
               

               
Cow position:
               
chr19:9117947-9117368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
220-706
               

               
Cow position:
               
chr19:35978932-35979450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 222
               

               
Conread position:
               
269-708
               

               
Cow position:
               
chr19:40852705-40852251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr19:7488039-7488500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
271-708
               

               
Cow position:
               
chr19:4385212-4385667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
332-675
               

               
Cow position:
               
chr19:29209359-29209712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 118
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr2:19985214-19985038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chr2:85362598-85362214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
215, 117
               

               
Conread position:
               
2-688
               

               
Cow position:
               
chr2:67015245-67014563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
10-628
               

               
Cow position:
               
chr2:47583343-47582755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
34-377
               

               
Cow position:
               
chr2:50456958-50456608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
185, 106
               

               
Conread position:
               
35-628
               

               
Cow position:
               
chr2:52651825-52652423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr2:976321-975648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr2:47809965-47810640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
70-708
               

               
Cow position:
               
chr2:20027744-20028417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr2:283686-283063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
113-707
               

               
Cow position:
               
chr2:46537136-46536516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 75
               

               
Conread position:
               
143-708
               

               
Cow position:
               
chr2:50984192-50983599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
152-708
               

               
Cow position:
               
chr2:28651186-28650598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
232-625
               

               
Cow position:
               
chr2:22136766-22136376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 34
               

               
Conread position:
               
270-688
               

               
Cow position:
               
chr2:52680603-52681031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 57
               

               
Conread position:
               
274-500
               

               
Cow position:
               
chr2:19984998-19984788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
279-621
               

               
Cow position:
               
chr2:44985226-44985559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
330-708
               

               
Cow position:
               
chr2:2102218-2101841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
332-704
               

               
Cow position:
               
chr2:52152617-52152240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 160
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr2:44345950-44346345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 159
               

               
Conread position:
               
438-708
               

               
Cow position:
               
chr2:7211053-7211328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
491-708
               

               
Cow position:
               
chr2:19984763-19984548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 130
               

               
Conread position:
               
497-691
               

               
Cow position:
               
chr2:50456408-50456214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
178, 153
               

               
Conread position:
               
10-211
               

               
Cow position:
               
chr20:1016155-1015959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 23
               

               
Conread position:
               
37-706
               

               
Cow position:
               
chr20:8371430-8370772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
241, 37
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr20:5534452-5535081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr20:3270406-3270848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
436-704
               

               
Cow position:
               
chr20:8835766-8835500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 40
               

               
Conread position:
               
438-707
               

               
Cow position:
               
chr20:14012335-14012613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
440-706
               

               
Cow position:
               
chr20:22206412-22206677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 203
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr21:4981858-4982123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
169, 180
               

               
Conread position:
               
58-691
               

               
Cow position:
               
chr21:21031322-21031973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
89-698
               

               
Cow position:
               
chr21:13182953-13183568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
177, 28
               

               
Conread position:
               
139-708
               

               
Cow position:
               
chr21:34259538-34258967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
270-587
               

               
Cow position:
               
chr21:4297997-4298305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 139
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr21:30561604-30562065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
325-704
               

               
Cow position:
               
chr21:30165614-30165223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
413-708
               

               
Cow position:
               
chr21:2789037-2788729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
463-706
               

               
Cow position:
               
chr21:28495006-28495257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
24-269
               

               
Cow position:
               
chr22:13677334-13677079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
181, 131
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr22:17329332-17328649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
72-690
               

               
Cow position:
               
chr22:42746946-42747577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
133-708
               

               
Cow position:
               
chr22:39882678-39882086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
135-708
               

               
Cow position:
               
chr22:31312830-31313431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
269-708
               

               
Cow position:
               
chr22:18816753-18816295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
330-706
               

               
Cow position:
               
chr22:36267073-36267448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
494-693
               

               
Cow position:
               
chr22:46426980-46426783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
181, 10
               

               
Conread position:
               
270-706
               

               
Cow position:
               
chr23:5875142-5874686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
270-706
               

               
Cow position:
               
chr23:30636672-30636213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr23:2795932-2795475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr23:36031740-36031283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
355-688
               

               
Cow position:
               
chr23:17184866-17185197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
134, 63
               

               
Conread position:
               
463-707
               

               
Cow position:
               
chr23:3013481-3013735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
490-708
               

               
Cow position:
               
chr23:14921137-14920921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
34-178
               

               
Cow position:
               
chr24:5935744-5935888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
54-708
               

               
Cow position:
               
chr24:16140596-16141251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 64
               

               
Conread position:
               
364-688
               

               
Cow position:
               
chr24:31008114-31007789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
52, 175
               

               
Conread position:
               
452-707
               

               
Cow position:
               
chr24:35841702-35841448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
498-708
               

               
Cow position:
               
chr24:26797445-26797234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr25:14998171-14997817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr25:21544536-21544840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
116, 12
               

               
Conread position:
               
34-410
               

               
Cow position:
               
chr25:18014843-18014473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
54-349
               

               
Cow position:
               
chr25:28028604-28028308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
62-689
               

               
Cow position:
               
chr25:28170545-28169901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
175, 8
               

               
Conread position:
               
63-706
               

               
Cow position:
               
chr25:12760117-12759469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
292, 47
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr25:13780485-13781162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
65-706
               

               
Cow position:
               
chr25:18224145-18223513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
77-587
               

               
Cow position:
               
chr25:18288352-18287826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
89-708
               

               
Cow position:
               
chr25:18329600-18328973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
102-688
               

               
Cow position:
               
chr25:17615756-17615158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
162-687
               

               
Cow position:
               
chr25:25118503-25119033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr25:22147167-22147627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
435-708
               

               
Cow position:
               
chr25:17468845-17468566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
442-632
               

               
Cow position:
               
chr25:19429107-19428918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
448-706
               

               
Cow position:
               
chr25:17877901-17877637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
490-706
               

               
Cow position:
               
chr25:4761088-4760867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
506-687
               

               
Cow position:
               
chr25:536870-536694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
170, 37
               

               
Conread position:
               
6-676
               

               
Cow position:
               
chr26:15553815-15553160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
14-708
               

               
Cow position:
               
chr26:9077678-9078412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
25-633
               

               
Cow position:
               
chr26:15157763-15158397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr26:9563665-9563204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
324-706
               

               
Cow position:
               
chr26:3691558-3691951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 166
               

               
Conread position:
               
2-706
               

               
Cow position:
               
chr27:28890123-28890813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
209, 18
               

               
Conread position:
               
57-693
               

               
Cow position:
               
chr27:7312474-7311849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr27:892665-893297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr27:1208982-1209442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 224
               

               
Conread position:
               
301-688
               

               
Cow position:
               
chr27:22746361-22745961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
2-387
               

               
Cow position:
               
chr28:581205-580821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 129
               

               
Conread position:
               
39-706
               

               
Cow position:
               
chr28:11027474-11026833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
167, 69
               

               
Conread position:
               
54-704
               

               
Cow position:
               
chr28:5401926-5401267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr28:2083053-2083730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
72-684
               

               
Cow position:
               
chr28:9262648-9263241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
216, 108
               

               
Conread position:
               
75-706
               

               
Cow position:
               
chr28:17195863-17195245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
135-708
               

               
Cow position:
               
chr28:10582451-10581852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
180-707
               

               
Cow position:
               
chr28:7900937-7901488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
220-708
               

               
Cow position:
               
chr28:21358633-21359136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
220-708
               

               
Cow position:
               
chr28:24667226-24667714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
270-588
               

               
Cow position:
               
chr28:8969682-8969989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
141, 52
               

               
Conread position:
               
273-704
               

               
Cow position:
               
chr28:24306979-24306535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 238
               

               
Conread position:
               
276-607
               

               
Cow position:
               
chr28:767912-767572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 45
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr28:9953875-9954267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 161
               

               
Conread position:
               
364-706
               

               
Cow position:
               
chr28:27937665-27937321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
436-705
               

               
Cow position:
               
chr28:33765159-33765433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr29:44467677-44468057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
2-462
               

               
Cow position:
               
chr29:10843652-10844124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
2-587
               

               
Cow position:
               
chr29:32731251-32731861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 26
               

               
Conread position:
               
42-706
               

               
Cow position:
               
chr29:36599890-36599233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
223, 13
               

               
Conread position:
               
59-708
               

               
Cow position:
               
chr29:49068-48378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr29:2099261-2099945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr29:26165403-26164722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr29:34800374-34799708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
76-708
               

               
Cow position:
               
chr29:39080279-39079612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
106-708
               

               
Cow position:
               
chr29:43322026-43322660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
116-708
               

               
Cow position:
               
chr29:35196164-35196767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
158-705
               

               
Cow position:
               
chr29:16176237-16175673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
220-708
               

               
Cow position:
               
chr29:11048881-11049379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
248-708
               

               
Cow position:
               
chr29:7431597-7431115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
270-704
               

               
Cow position:
               
chr29:2841725-2841273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr29:2689546-2690002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr29:32539451-32539910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr29:40503339-40502880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
331-707
               

               
Cow position:
               
chr29:16769837-16770222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 160
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr29:39313884-39313491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
82, 164
               

               
Conread position:
               
2-637
               

               
Cow position:
               
chr3:79433917-79433276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
224, 64
               

               
Conread position:
               
2-704
               

               
Cow position:
               
chr3:28930337-28929624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
32-579
               

               
Cow position:
               
chr3:18556379-18556924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
56-706
               

               
Cow position:
               
chr3:25788653-25788027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
58-673
               

               
Cow position:
               
chr3:78018832-78019476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr3:57485389-57484711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
100-706
               

               
Cow position:
               
chr3:53410320-53410928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr3:23292025-23291389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr3:43040287-43039688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
124-706
               

               
Cow position:
               
chr3:16867380-16866765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
201-708
               

               
Cow position:
               
chr3:14634599-14634094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
237-708
               

               
Cow position:
               
chr3:26574003-26573514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 218
               

               
Conread position:
               
240-708
               

               
Cow position:
               
chr3:472069-472550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr3:72629629-72630087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr3:78027853-78027392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
271-708
               

               
Cow position:
               
chr3:594148-594593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
271-708
               

               
Cow position:
               
chr3:36882353-36881904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chr3:9716435-9716832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
527-708
               

               
Cow position:
               
chr3:3806174-3806357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-704
               

               
Cow position:
               
chr4:40406489-40405777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 46
               

               
Conread position:
               
23-337
               

               
Cow position:
               
chr4:44764486-44764802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
64-707
               

               
Cow position:
               
chr4:355053-355732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
107-706
               

               
Cow position:
               
chr4:41330623-41331258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr4:44724269-44724906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
135-708
               

               
Cow position:
               
chr4:4905373-4905969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
137-706
               

               
Cow position:
               
chr4:39272707-39272116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
269-706
               

               
Cow position:
               
chr4:43880471-43880930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
464-701
               

               
Cow position:
               
chr4:46029811-46030053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 160
               

               
Conread position:
               
473-708
               

               
Cow position:
               
chr4:17533280-17533037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
6-707
               

               
Cow position:
               
chr5:51861837-51861177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
233, 101
               

               
Conread position:
               
25-569
               

               
Cow position:
               
chr5:23456660-23457212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr5:416418-415805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
149-708
               

               
Cow position:
               
chr5:7273190-7273769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
150-707
               

               
Cow position:
               
chr5:26507781-26508356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
67, 180
               

               
Conread position:
               
158-706
               

               
Cow position:
               
chr5:14659761-14659179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 214
               

               
Conread position:
               
159-707
               

               
Cow position:
               
chr5:32674398-32673827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 116
               

               
Conread position:
               
208-708
               

               
Cow position:
               
chr5:36718027-36717521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
270-687
               

               
Cow position:
               
chr5:63480410-63479981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
65, 333
               

               
Conread position:
               
270-706
               

               
Cow position:
               
chr5:29008818-29009270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 223
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr5:37731802-37732263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr5:49181743-49182186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
130, 86
               

               
Conread position:
               
318-708
               

               
Cow position:
               
chr5:26769327-26769727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
435-706
               

               
Cow position:
               
chr5:6188202-6188476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 241
               

               
Conread position:
               
436-706
               

               
Cow position:
               
chr5:28335195-28334916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
436-708
               

               
Cow position:
               
chr5:28031121-28031394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
437-706
               

               
Cow position:
               
chr5:70601841-70602106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
448-706
               

               
Cow position:
               
chr5:32249708-32249962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
2-706
               

               
Cow position:
               
chr6:6837992-6838711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
15-626
               

               
Cow position:
               
chr6:60384329-60384954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
23-690
               

               
Cow position:
               
chr6:50137961-50138636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
100-706
               

               
Cow position:
               
chr6:525699-526295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
210, 55
               

               
Conread position:
               
157-708
               

               
Cow position:
               
chr6:19453407-19453976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
166-708
               

               
Cow position:
               
chr6:59919778-59919219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
269-706
               

               
Cow position:
               
chr6:57010250-57009807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
413-708
               

               
Cow position:
               
chr6:65880622-65880926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
9-689
               

               
Cow position:
               
chr7:26844259-26844943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
183, 57
               

               
Conread position:
               
28-351
               

               
Cow position:
               
chr7:986451-986786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr7:28635109-28635584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 7
               

               
Conread position:
               
54-592
               

               
Cow position:
               
chr7:65771696-65771127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
147, 246
               

               
Conread position:
               
59-625
               

               
Cow position:
               
chr7:11492422-11491872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
278, 63
               

               
Conread position:
               
63-708
               

               
Cow position:
               
chr7:32189994-32189358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 95
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr7:1373185-1372503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
65-708
               

               
Cow position:
               
chr7:54602324-54603000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
76-708
               

               
Cow position:
               
chr7:55538440-55537768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
107-708
               

               
Cow position:
               
chr7:21984909-21985548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
112-589
               

               
Cow position:
               
chr7:4690074-4690574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr7:34485420-34486062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
141-387
               

               
Cow position:
               
chr7:58352006-58351756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
149-704
               

               
Cow position:
               
chr7:50043392-50042826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
149-708
               

               
Cow position:
               
chr7:21235455-21234862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
209-708
               

               
Cow position:
               
chr7:6934639-6934142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
270-707
               

               
Cow position:
               
chr7:19925123-19924675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
463-708
               

               
Cow position:
               
chr7:68328576-68328821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
478-708
               

               
Cow position:
               
chr7:1824018-1823784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 145
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr8:27634774-27634428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
3-708
               

               
Cow position:
               
chr8:27377751-27378479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 79
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr8:47787682-47787512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr8:38400758-38400566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
23-537
               

               
Cow position:
               
chr8:41739203-41739705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
30-687
               

               
Cow position:
               
chr8:35587247-35587915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
187, 10
               

               
Conread position:
               
33-677
               

               
Cow position:
               
chr8:46149314-46148702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
55-328
               

               
Cow position:
               
chr8:47743887-47744173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
148, 98
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr8:3857361-3856678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr8:8909887-8910557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr8:10743959-10743294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr8:25407112-25407781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr8:47662671-47661990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
88-673
               

               
Cow position:
               
chr8:45844515-45843942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr8:8229908-8229445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr8:25522274-25522737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr8:59263017-59262557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
443-689
               

               
Cow position:
               
chr8:61067180-61066927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr9:28698406-28698725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
54-684
               

               
Cow position:
               
chr9:22086946-22087543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
61-708
               

               
Cow position:
               
chr9:30671704-30672356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
64-708
               

               
Cow position:
               
chr9:42568176-42568860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chr9:31806913-31807522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
270-708
               

               
Cow position:
               
chr9:37971679-37971222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
331-708
               

               
Cow position:
               
chr9:10314974-10315354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
333-708
               

               
Cow position:
               
chr9:6051445-6051061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
336-671
               

               
Cow position:
               
chr9:25454138-25453790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 226
               

               
Conread position:
               
23-700
               

               
Cow position:
               
chrX:1697677-1696984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
50-708
               

               
Cow position:
               
chrX:15310040-15309364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
54-353
               

               
Cow position:
               
chrX:32010083-32009766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
149, 104
               

               
Conread position:
               
67-706
               

               
Cow position:
               
chrX:17885886-17886552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
89-350
               

               
Cow position:
               
chrX:26419976-26420243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
99-706
               

               
Cow position:
               
chrX:17615135-17614521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
113-708
               

               
Cow position:
               
chrX:23392321-23391705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
131-708
               

               
Cow position:
               
chrX:23456271-23455684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
135-536
               

               
Cow position:
               
chrX:19189665-19190079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
141-708
               

               
Cow position:
               
chrX:40057752-40057171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
142-706
               

               
Cow position:
               
chrX:22894071-22893475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
270-648
               

               
Cow position:
               
chrX:21656577-21656963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
270-691
               

               
Cow position:
               
chrX:36646331-36646762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
280-642
               

               
Cow position:
               
chrX:27005096-27005448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
332-707
               

               
Cow position:
               
chrX:24122418-24122027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 366
               

               
Conread position:
               
332-708
               

               
Cow position:
               
chrX:22777815-22778206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
411-708
               

               
Cow position:
               
chrX:22583110-22582806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
433-708
               

               
Cow position:
               
chrX:28766872-28766588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
438-610
               

               
Cow position:
               
chrX:28583614-28583790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
443-708
               

               
Cow position:
               
chrX:15991583-15991317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
463-673
               

               
Cow position:
               
chrX:10455982-10456194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
521-708
               

               
Cow position:
               
chrX:21632883-21632693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 106