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Cow genome map

           
Conread name:
           
Ss1.1-Emb1-C0005193_I07.5
        

               
Conread position:
               
103-431
               

               
Cow position:
               
chr1:2000239-1999909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
237, 0
               

               
Conread position:
               
111-332
               

               
Cow position:
               
chr1:1999643-1999422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr1:2000023-1999796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
162, 166
               

               
Conread position:
               
177-408
               

               
Cow position:
               
chr1:2000249-2000016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 202
               

               
Conread position:
               
87-376
               

               
Cow position:
               
chr10:9010407-9010116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
92-392
               

               
Cow position:
               
chr10:8996338-8996038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
224, 213
               

               
Conread position:
               
101-415
               

               
Cow position:
               
chr10:8996833-8996517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
242, 0
               

               
Conread position:
               
146-376
               

               
Cow position:
               
chr10:8996872-8996640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
169, 174
               

               
Conread position:
               
149-390
               

               
Cow position:
               
chr10:8996449-8996208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
166, 170
               

               
Conread position:
               
149-399
               

               
Cow position:
               
chr10:8996365-8996115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr10:21939101-21938834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
190, 250
               

               
Conread position:
               
150-446
               

               
Cow position:
               
chr10:8996616-8996317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 86
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr10:9010091-9009864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr10:9010511-9010284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
163, 148
               

               
Conread position:
               
151-385
               

               
Cow position:
               
chr10:21939015-21938779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr10:8996531-8996249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
159-376
               

               
Cow position:
               
chr10:21938923-21938706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
155, 160
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr11:74554680-74554385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
148-379
               

               
Cow position:
               
chr11:74554709-74554476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
148-431
               

               
Cow position:
               
chr11:74554877-74554592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
189, 243
               

               
Conread position:
               
149-376
               

               
Cow position:
               
chr11:74555044-74554815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr11:74554792-74554525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
155, 171
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr11:74554960-74554693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
166, 171
               

               
Conread position:
               
150-341
               

               
Cow position:
               
chr11:74554371-74554180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
150-418
               

               
Cow position:
               
chr11:50368544-50368274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
163-376
               

               
Cow position:
               
chr11:74554442-74554227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 157
               

               
Conread position:
               
174-415
               

               
Cow position:
               
chr11:74555103-74554860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
102-404
               

               
Cow position:
               
chr13:22125110-22125414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 126
               

               
Conread position:
               
145-404
               

               
Cow position:
               
chr13:22125573-22125834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
194, 244
               

               
Conread position:
               
145-446
               

               
Cow position:
               
chr13:22125237-22125541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
145-448
               

               
Cow position:
               
chr13:24162963-24163269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
145-451
               

               
Cow position:
               
chr13:24162795-24163106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
148-409
               

               
Cow position:
               
chr13:39930875-39931138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
150-403
               

               
Cow position:
               
chr13:22125410-22125665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
67, 71
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr13:24163136-24163396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
67, 71
               

               
Conread position:
               
150-451
               

               
Cow position:
               
chr13:22125074-22125380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
151-345
               

               
Cow position:
               
chr13:39930962-39931156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-379
               

               
Cow position:
               
chr13:24163221-24163451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-404
               

               
Cow position:
               
chr13:24163305-24163560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
188, 238
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr13:22124739-22124999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr13:22124991-22125251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr13:24162465-24162725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr13:24162717-24162977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
151-453
               

               
Cow position:
               
chr13:39930710-39931014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
186, 225
               

               
Conread position:
               
154-453
               

               
Cow position:
               
chr13:39930629-39930930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
183, 299
               

               
Conread position:
               
155-409
               

               
Cow position:
               
chr13:22124911-22125167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
155-409
               

               
Cow position:
               
chr13:24162637-24162893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
158-379
               

               
Cow position:
               
chr13:24163060-24163283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
158-409
               

               
Cow position:
               
chr13:22125334-22125587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
163-404
               

               
Cow position:
               
chr13:22124835-22125078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
174, 187
               

               
Conread position:
               
163-448
               

               
Cow position:
               
chr13:24162561-24162849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
15-448
               

               
Cow position:
               
chr14:447434-447870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 0
               

               
Conread position:
               
65-414
               

               
Cow position:
               
chr14:25895765-25896116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 73
               

               
Conread position:
               
68-408
               

               
Cow position:
               
chr14:3061087-3060745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
275, 296
               

               
Conread position:
               
75-414
               

               
Cow position:
               
chr14:3080774-3080432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr14:433800-434140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
238, 244
               

               
Conread position:
               
87-448
               

               
Cow position:
               
chr14:447758-448122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 233
               

               
Conread position:
               
90-378
               

               
Cow position:
               
chr14:3061401-3061111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
90-404
               

               
Cow position:
               
chr14:680731-681047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
247, 0
               

               
Conread position:
               
92-404
               

               
Cow position:
               
chr14:680649-680963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
92-414
               

               
Cow position:
               
chr14:680313-680637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
92-414
               

               
Cow position:
               
chr14:3061651-3061327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
57, 49
               

               
Conread position:
               
92-414
               

               
Cow position:
               
chr14:3080504-3080180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
93-343
               

               
Cow position:
               
chr14:434153-434405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
93-376
               

               
Cow position:
               
chr14:3127931-3127646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-377
               

               
Cow position:
               
chr14:3100996-3100712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr14:25895289-25895577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
224, 209
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr14:3080167-3079854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr14:25895373-25895686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
143, 124
               

               
Conread position:
               
93-409
               

               
Cow position:
               
chr14:433985-434303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr14:3080251-3079928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 227
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr14:3080671-3080348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr14:3155500-3155823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr14:3156157-3156480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
93-425
               

               
Cow position:
               
chr14:434069-434403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-427
               

               
Cow position:
               
chr14:3127763-3127429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
244, 295
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr14:25895878-25896162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
218, 225
               

               
Conread position:
               
94-409
               

               
Cow position:
               
chr14:3155417-3155734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
129, 141
               

               
Conread position:
               
103-404
               

               
Cow position:
               
chr14:3080997-3080694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
105, 99
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr14:420587-420877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
225, 48
               

               
Conread position:
               
112-408
               

               
Cow position:
               
chr14:433920-434218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
112-414
               

               
Cow position:
               
chr14:3080316-3080012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
121-448
               

               
Cow position:
               
chr14:680174-680504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
136-414
               

               
Cow position:
               
chr14:3061523-3061243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
201, 259
               

               
Conread position:
               
144-432
               

               
Cow position:
               
chr14:3060927-3060637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 80
               

               
Conread position:
               
144-448
               

               
Cow position:
               
chr14:3155383-3155690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 92
               

               
Conread position:
               
145-448
               

               
Cow position:
               
chr14:3128131-3127825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
146-383
               

               
Cow position:
               
chr14:3061093-3060854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
146-402
               

               
Cow position:
               
chr14:3127962-3127704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
146-404
               

               
Cow position:
               
chr14:3061429-3061169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
146-408
               

               
Cow position:
               
chr14:3061681-3061417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
169, 174
               

               
Conread position:
               
147-386
               

               
Cow position:
               
chr14:3080533-3080292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
190, 209
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr14:3128212-3127944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
148-414
               

               
Cow position:
               
chr14:3100859-3100591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr14:3080784-3080515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
149-335
               

               
Cow position:
               
chr14:3079859-3079673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-341
               

               
Cow position:
               
chr14:681042-681234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
164, 171
               

               
Conread position:
               
149-341
               

               
Cow position:
               
chr14:3100606-3100414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
149-383
               

               
Cow position:
               
chr14:663340-663104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 64
               

               
Conread position:
               
149-404
               

               
Cow position:
               
chr14:680874-681131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr14:3080027-3079760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr14:3080867-3080600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr14:3127539-3127272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
167, 171
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chr14:3155961-3156229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 85
               

               
Conread position:
               
149-431
               

               
Cow position:
               
chr14:3061174-3060890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr14:3061258-3060956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr14:3080363-3080061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
167, 171
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr14:3156129-3156431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
190, 238
               

               
Conread position:
               
149-465
               

               
Cow position:
               
chr14:447988-448305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 87
               

               
Conread position:
               
150-393
               

               
Cow position:
               
chr14:25877559-25877804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr14:25836783-25837049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
150-429
               

               
Cow position:
               
chr14:680539-680820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
151-335
               

               
Cow position:
               
chr14:3156299-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-341
               

               
Cow position:
               
chr14:3155642-3155832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
66, 70
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr14:25896103-25896294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 81
               

               
Conread position:
               
151-373
               

               
Cow position:
               
chr14:3127453-3127233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr14:25877392-25877619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr14:25895179-25895406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr14:25895599-25895826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
151-400
               

               
Cow position:
               
chr14:25895263-25895512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
172, 231
               

               
Conread position:
               
151-404
               

               
Cow position:
               
chr14:680960-681215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
192, 203
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr14:3128041-3127781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr14:3156047-3156312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr14:25895095-25895360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr14:25895515-25895780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
151-430
               

               
Cow position:
               
chr14:3079941-3079660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr14:680456-680738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
188, 203
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr14:25894927-25895209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr14:25910896-25911178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 75
               

               
Conread position:
               
151-448
               

               
Cow position:
               
chr14:25836196-25836496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
155-402
               

               
Cow position:
               
chr14:438348-438595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
159, 28
               

               
Conread position:
               
160-376
               

               
Cow position:
               
chr14:25836709-25836927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
161-376
               

               
Cow position:
               
chr14:25877486-25877703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
158, 141
               

               
Conread position:
               
162-414
               

               
Cow position:
               
chr14:3127778-3127524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
169-402
               

               
Cow position:
               
chr14:3061742-3061507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
155-379
               

               
Cow position:
               
chr15:19139171-19138945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chr15:19138911-19138663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
87-340
               

               
Cow position:
               
chr17:22590185-22589932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
89-405
               

               
Cow position:
               
chr17:41440868-41440550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
90-408
               

               
Cow position:
               
chr17:44467612-44467932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
90-448
               

               
Cow position:
               
chr17:44467359-44467721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
92-423
               

               
Cow position:
               
chr17:41440529-41440196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
93-376
               

               
Cow position:
               
chr17:44467531-44467816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr17:44467951-44468239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-405
               

               
Cow position:
               
chr17:41441032-41440718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
244, 257
               

               
Conread position:
               
95-414
               

               
Cow position:
               
chr17:44467449-44467770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
103-414
               

               
Cow position:
               
chr17:44467793-44468106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
103-414
               

               
Cow position:
               
chr17:44467877-44468190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
236, 261
               

               
Conread position:
               
112-417
               

               
Cow position:
               
chr17:44468054-44468361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
226, 0
               

               
Conread position:
               
135-408
               

               
Cow position:
               
chr17:41440654-41440379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
145-341
               

               
Cow position:
               
chr17:22552289-22552093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-447
               

               
Cow position:
               
chr17:22499166-22498863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
197, 5
               

               
Conread position:
               
148-435
               

               
Cow position:
               
chr17:22552202-22551913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
194, 271
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr17:41440724-41440463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
150-415
               

               
Cow position:
               
chr17:22452149-22451882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
151-416
               

               
Cow position:
               
chr17:22452064-22451797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr17:22552367-22552069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
191, 203
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr17:22552535-22552237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
186, 268
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr17:22552955-22552657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 78
               

               
Conread position:
               
160-431
               

               
Cow position:
               
chr17:41441049-41440776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
155, 160
               

               
Conread position:
               
163-403
               

               
Cow position:
               
chr17:41440542-41440300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chr17:41441118-41440905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
87-446
               

               
Cow position:
               
chr18:33064684-33064322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
219, 233
               

               
Conread position:
               
91-304
               

               
Cow position:
               
chr18:44817831-44818044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-448
               

               
Cow position:
               
chr18:53586489-53586129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
92-375
               

               
Cow position:
               
chr18:53560353-53560638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
251, 262
               

               
Conread position:
               
92-404
               

               
Cow position:
               
chr18:55066767-55066453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
250, 262
               

               
Conread position:
               
92-404
               

               
Cow position:
               
chr18:56493851-56494165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
92-446
               

               
Cow position:
               
chr18:56128212-56128569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr18:53560437-53560795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
93-343
               

               
Cow position:
               
chr18:55497278-55497028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
223, 227
               

               
Conread position:
               
93-357
               

               
Cow position:
               
chr18:42693872-42693608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 121
               

               
Conread position:
               
93-373
               

               
Cow position:
               
chr18:56128885-56129166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
221, 227
               

               
Conread position:
               
93-375
               

               
Cow position:
               
chr18:53635280-53634996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
222, 227
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr18:53610123-53609828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-396
               

               
Cow position:
               
chr18:56128717-56129022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-397
               

               
Cow position:
               
chr18:53610375-53610069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
93-402
               

               
Cow position:
               
chr18:33064762-33064451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
93-403
               

               
Cow position:
               
chr18:56329339-56329027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
124, 133
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr18:55497530-55497207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr18:56316477-56316800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-415
               

               
Cow position:
               
chr18:50848763-50849087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-424
               

               
Cow position:
               
chr18:56316561-56316894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-446
               

               
Cow position:
               
chr18:49022738-49023094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
93-446
               

               
Cow position:
               
chr18:53509330-53509686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
205, 227
               

               
Conread position:
               
93-446
               

               
Cow position:
               
chr18:53635952-53635596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-446
               

               
Cow position:
               
chr18:56329759-56329403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
130, 143
               

               
Conread position:
               
93-447
               

               
Cow position:
               
chr18:22844361-22844001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
93-448
               

               
Cow position:
               
chr18:56316225-56316583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
94-375
               

               
Cow position:
               
chr18:33064257-33063974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
248, 0
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr18:53635699-53635415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
94-394
               

               
Cow position:
               
chr18:42792149-42792451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
94-396
               

               
Cow position:
               
chr18:42693955-42693651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
243, 282
               

               
Conread position:
               
94-402
               

               
Cow position:
               
chr18:52012350-52012040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
220, 226
               

               
Conread position:
               
94-402
               

               
Cow position:
               
chr18:56128466-56128776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
96-376
               

               
Cow position:
               
chr18:56316060-56316342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
222, 205
               

               
Conread position:
               
97-446
               

               
Cow position:
               
chr18:40306601-40306953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 138
               

               
Conread position:
               
102-414
               

               
Cow position:
               
chr18:56391582-56391268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
112-414
               

               
Cow position:
               
chr18:42724309-42724005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
227, 276
               

               
Conread position:
               
112-446
               

               
Cow position:
               
chr18:33064491-33064154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
136-376
               

               
Cow position:
               
chr18:42792107-42792349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
145-380
               

               
Cow position:
               
chr18:53586771-53586534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
145-402
               

               
Cow position:
               
chr18:52011879-52011620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
145-403
               

               
Cow position:
               
chr18:56494240-56494500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
145-414
               

               
Cow position:
               
chr18:52012047-52011776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
145-446
               

               
Cow position:
               
chr18:53586939-53586635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
171, 175
               

               
Conread position:
               
146-378
               

               
Cow position:
               
chr18:56128182-56128416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 83
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr18:56391454-56391189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
170, 174
               

               
Conread position:
               
146-446
               

               
Cow position:
               
chr18:49032733-49032430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 90
               

               
Conread position:
               
147-434
               

               
Cow position:
               
chr18:53635478-53635189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
190, 252
               

               
Conread position:
               
147-434
               

               
Cow position:
               
chr18:56128687-56128976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 252
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr18:50282157-50282334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
148-379
               

               
Cow position:
               
chr18:53610236-53610003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr18:56330040-56329778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr18:49022709-49022978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
187, 214
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr18:49033067-49032798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 157
               

               
Conread position:
               
149-334
               

               
Cow position:
               
chr18:56267312-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-368
               

               
Cow position:
               
chr18:55067046-55066825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
149-373
               

               
Cow position:
               
chr18:52011791-52011565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
171, 164
               

               
Conread position:
               
149-375
               

               
Cow position:
               
chr18:14453956-14453728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
149-375
               

               
Cow position:
               
chr18:42744233-42744005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
149-378
               

               
Cow position:
               
chr18:14453224-14452993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
149-402
               

               
Cow position:
               
chr18:52012211-52011956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 171
               

               
Conread position:
               
149-404
               

               
Cow position:
               
chr18:49033234-49032977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
149-404
               

               
Cow position:
               
chr18:56267396-56267139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
187, 235
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr18:52012379-52012118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr18:56391283-56391022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr18:56391367-56391106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:49032394-49032127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:49032478-49032211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
166, 170
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:49032814-49032547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
157, 170
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:49033150-49032883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:52012127-52011860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:56329451-56329184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:56329535-56329268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:56329787-56329520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
156, 171
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr18:56329955-56329688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-425
               

               
Cow position:
               
chr18:56391115-56390837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
167, 171
               

               
Conread position:
               
149-434
               

               
Cow position:
               
chr18:53610403-53610116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-435
               

               
Cow position:
               
chr18:56329367-56329079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr18:53586515-53586213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
149-448
               

               
Cow position:
               
chr18:56329619-56329317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 80
               

               
Conread position:
               
149-455
               

               
Cow position:
               
chr18:50281822-50282130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
188, 278
               

               
Conread position:
               
150-376
               

               
Cow position:
               
chr18:50848988-50849216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
150-378
               

               
Cow position:
               
chr18:56316786-56317016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
150-380
               

               
Cow position:
               
chr18:33063949-33063717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-380
               

               
Cow position:
               
chr18:33064873-33064641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-402
               

               
Cow position:
               
chr18:33063865-33063611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-404
               

               
Cow position:
               
chr18:56316198-56316454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr18:50246142-50246402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr18:56316450-56316716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-418
               

               
Cow position:
               
chr18:56391921-56391651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
150-430
               

               
Cow position:
               
chr18:56316702-56316984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-431
               

               
Cow position:
               
chr18:56267479-56267196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 86
               

               
Conread position:
               
151-325
               

               
Cow position:
               
chr18:55066540-55066366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr18:56248175-56247986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
151-348
               

               
Cow position:
               
chr18:55066792-55066594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr18:33092956-33092730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
151, 146
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr18:40306739-40306965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr18:42693562-42693336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr18:56128103-56128329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr18:42792374-42792601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr18:50848905-50849132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr18:53636062-53635835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr18:56329113-56328886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-379
               

               
Cow position:
               
chr18:41197641-41197871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-385
               

               
Cow position:
               
chr18:53635390-53635154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-388
               

               
Cow position:
               
chr18:50058801-50058562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-398
               

               
Cow position:
               
chr18:50059137-50058888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr18:33064032-33063779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr18:49032644-49032391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr18:56316367-56316620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 124
               

               
Conread position:
               
151-404
               

               
Cow position:
               
chr18:53586261-53586006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
191, 203
               

               
Conread position:
               
151-408
               

               
Cow position:
               
chr18:49033316-49033057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-408
               

               
Cow position:
               
chr18:56391197-56390938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 169
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr18:55497640-55497380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
77, 71
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:40306319-40306584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
84, 79
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:49032560-49032295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:50083768-50084033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:50083852-50084117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
189, 238
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:56128439-56128704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:56329197-56328932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr18:56494162-56494427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
163, 168
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr18:44398289-44398023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
164, 168
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr18:52447930-52448196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-416
               

               
Cow position:
               
chr18:42724522-42724255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
151-416
               

               
Cow position:
               
chr18:49032308-49032041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr18:41949282-41949000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
158, 149
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr18:42675171-42674889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
161, 168
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr18:49032980-49032698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 78
               

               
Conread position:
               
151-432
               

               
Cow position:
               
chr18:1418320-1418603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr18:50246395-50246693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
151-449
               

               
Cow position:
               
chr18:1417984-1418285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
181, 176
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr18:56329025-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
76, 81
               

               
Conread position:
               
156-415
               

               
Cow position:
               
chr18:43048741-43048480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 80
               

               
Conread position:
               
157-433
               

               
Cow position:
               
chr18:53635300-53635023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
180, 262
               

               
Conread position:
               
157-455
               

               
Cow position:
               
chr18:56128865-56129164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
180, 262
               

               
Conread position:
               
159-375
               

               
Cow position:
               
chr18:53635550-53635332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
159-403
               

               
Cow position:
               
chr18:55497548-55497302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 76
               

               
Conread position:
               
159-403
               

               
Cow position:
               
chr18:56128615-56128861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
159-414
               

               
Cow position:
               
chr18:55497296-55497039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
70, 77
               

               
Conread position:
               
159-415
               

               
Cow position:
               
chr18:53609973-53609715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
159-434
               

               
Cow position:
               
chr18:53635718-53635441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
161-378
               

               
Cow position:
               
chr18:53635968-53635749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
163-375
               

               
Cow position:
               
chr18:55067116-55066902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 61
               

               
Conread position:
               
163-403
               

               
Cow position:
               
chr18:53610473-53610231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
163-448
               

               
Cow position:
               
chr18:56329857-56329569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
154, 141
               

               
Conread position:
               
164-414
               

               
Cow position:
               
chr18:56493839-56494091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
152, 156
               

               
Conread position:
               
172-446
               

               
Cow position:
               
chr18:56330184-56329907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
173-414
               

               
Cow position:
               
chr18:49033378-49033135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
164, 222
               

               
Conread position:
               
180-431
               

               
Cow position:
               
chr18:55497695-55497442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
87-414
               

               
Cow position:
               
chr19:23597115-23597444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 141
               

               
Conread position:
               
94-350
               

               
Cow position:
               
chr19:14948290-14948033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 147
               

               
Conread position:
               
94-375
               

               
Cow position:
               
chr19:23597374-23597657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
112-404
               

               
Cow position:
               
chr19:14960114-14959820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
148-376
               

               
Cow position:
               
chr19:23597344-23597574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
149-341
               

               
Cow position:
               
chr19:14940388-14940580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-342
               

               
Cow position:
               
chr19:23649954-23650147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
163, 171
               

               
Conread position:
               
149-376
               

               
Cow position:
               
chr19:23650038-23650267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
72, 86
               

               
Conread position:
               
149-419
               

               
Cow position:
               
chr19:14948319-14948047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
157, 171
               

               
Conread position:
               
150-415
               

               
Cow position:
               
chr19:14940137-14940404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr19:23649620-23649811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 77
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr19:14940306-14940559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr19:23649536-23649789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr19:23649368-23649628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr19:23649872-23650137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr19:23649452-23649718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
188, 244
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr19:23597095-23597393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
156-415
               

               
Cow position:
               
chr19:14960154-14959893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
93-342
               

               
Cow position:
               
chr2:82800120-82800369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 122
               

               
Conread position:
               
93-377
               

               
Cow position:
               
chr2:86465188-86465474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr2:48689534-48689251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
246, 119
               

               
Conread position:
               
112-404
               

               
Cow position:
               
chr2:82799803-82800097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
112-409
               

               
Cow position:
               
chr2:5875157-5874858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
205, 191
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr2:82799993-82800208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
149-431
               

               
Cow position:
               
chr2:82799672-82799956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
166, 171
               

               
Conread position:
               
150-404
               

               
Cow position:
               
chr2:82799505-82799761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
164, 170
               

               
Conread position:
               
151-405
               

               
Cow position:
               
chr2:5875034-5874778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
188, 244
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr2:5874698-5874438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr2:82799590-82799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr2:48689310-48689045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr2:5874614-5874348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
179, 248
               

               
Conread position:
               
163-375
               

               
Cow position:
               
chr2:5874770-5874556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 58
               

               
Conread position:
               
92-378
               

               
Cow position:
               
chr21:12608253-12607965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr21:12608841-12608479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 197
               

               
Conread position:
               
93-344
               

               
Cow position:
               
chr21:12659762-12660015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr21:12659258-12659571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
93-408
               

               
Cow position:
               
chr21:12659678-12659995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-409
               

               
Cow position:
               
chr21:12608588-12608270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
251, 0
               

               
Conread position:
               
93-409
               

               
Cow position:
               
chr21:12659426-12659744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
79, 74
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr21:12659006-12659329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr21:12659594-12659917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 0
               

               
Conread position:
               
94-408
               

               
Cow position:
               
chr21:12608755-12608439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 137
               

               
Conread position:
               
111-448
               

               
Cow position:
               
chr21:12608318-12607978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
232, 307
               

               
Conread position:
               
135-448
               

               
Cow position:
               
chr21:12608462-12608146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
150-375
               

               
Cow position:
               
chr21:12608867-12608640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
150-379
               

               
Cow position:
               
chr21:12658979-12659210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
150-391
               

               
Cow position:
               
chr21:12608615-12608372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
150-409
               

               
Cow position:
               
chr21:12659231-12659492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
151-404
               

               
Cow position:
               
chr21:12659568-12659823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 42
               

               
Conread position:
               
151-405
               

               
Cow position:
               
chr21:34222820-34222564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
162, 166
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr21:12659148-12659408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
135, 141
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr21:12659400-12659665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
188, 199
               

               
Conread position:
               
154-448
               

               
Cow position:
               
chr21:12658815-12659112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
78-414
               

               
Cow position:
               
chr22:11640849-11641187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
235, 242
               

               
Conread position:
               
93-408
               

               
Cow position:
               
chr22:12499632-12499949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr22:11641032-11641355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-454
               

               
Cow position:
               
chr22:12418853-12418489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
94-333
               

               
Cow position:
               
chr22:12418684-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
94-366
               

               
Cow position:
               
chr22:12498961-12499235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr22:12476280-12476014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
112-386
               

               
Cow position:
               
chr22:11640967-11641243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
101, 106
               

               
Conread position:
               
145-302
               

               
Cow position:
               
chr22:12419238-12419081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-447
               

               
Cow position:
               
chr22:12419322-12419018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
146-375
               

               
Cow position:
               
chr22:12431260-12431030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
191, 5
               

               
Conread position:
               
146-376
               

               
Cow position:
               
chr22:11701412-11701644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
156, 174
               

               
Conread position:
               
148-376
               

               
Cow position:
               
chr22:12432435-12432205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
149-376
               

               
Cow position:
               
chr22:11666677-11666906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
149-402
               

               
Cow position:
               
chr22:11641172-11641427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
166, 171
               

               
Conread position:
               
149-402
               

               
Cow position:
               
chr22:12399362-12399107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr22:11640836-11641103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
188, 233
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr22:11701331-11701598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
188, 248
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr22:12399698-12399431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-431
               

               
Cow position:
               
chr22:11640668-11640952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
85, 80
               

               
Conread position:
               
150-375
               

               
Cow position:
               
chr22:11640753-11640980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-376
               

               
Cow position:
               
chr22:12418880-12418652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 204
               

               
Conread position:
               
150-404
               

               
Cow position:
               
chr22:12418712-12418456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr22:11701164-11701430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
170, 155
               

               
Conread position:
               
150-451
               

               
Cow position:
               
chr22:12476326-12476022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
184, 0
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr22:12458544-12458318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr22:12458460-12458207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr22:12475905-12475640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
169, 164
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr22:12499354-12499619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr22:12475569-12475303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
151-423
               

               
Cow position:
               
chr22:12418963-12418689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
158, 147
               

               
Conread position:
               
151-453
               

               
Cow position:
               
chr22:12498934-12499239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
152-434
               

               
Cow position:
               
chr22:12458627-12458343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 79
               

               
Conread position:
               
154-335
               

               
Cow position:
               
chr22:12544564-12544745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-414
               

               
Cow position:
               
chr22:12419018-12418782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
157, 202
               

               
Conread position:
               
93-325
               

               
Cow position:
               
chr23:24546904-24546672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 143
               

               
Conread position:
               
93-393
               

               
Cow position:
               
chr23:24639642-24639944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
98-415
               

               
Cow position:
               
chr23:24639395-24639714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 117
               

               
Conread position:
               
111-419
               

               
Cow position:
               
chr23:25724019-25723709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
226, 0
               

               
Conread position:
               
146-376
               

               
Cow position:
               
chr23:25660295-25660526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
169, 5
               

               
Conread position:
               
148-386
               

               
Cow position:
               
chr23:25724066-25723826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr23:24547017-24546748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chr23:25660213-25660481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
150-347
               

               
Cow position:
               
chr23:24626539-24626736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 169
               

               
Conread position:
               
150-376
               

               
Cow position:
               
chr23:24560575-24560347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr23:24547183-24546947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-396
               

               
Cow position:
               
chr23:24560659-24560411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-403
               

               
Cow position:
               
chr23:24626371-24626626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr23:24535729-24535502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
158, 168
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr23:24639616-24639843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-396
               

               
Cow position:
               
chr23:24639784-24640031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr23:24626456-24626721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr23:24547098-24546832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-430
               

               
Cow position:
               
chr23:25626679-25626959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr23:24560490-24560208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr23:24639532-24639830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
156-434
               

               
Cow position:
               
chr23:24560821-24560541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
167-446
               

               
Cow position:
               
chr23:24626304-24626586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
135-341
               

               
Cow position:
               
chr24:17036247-17036041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
145-349
               

               
Cow position:
               
chr24:17013305-17013509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr24:17036484-17036292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr24:17013227-17013418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-396
               

               
Cow position:
               
chr24:17035391-17035144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
160, 153
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr24:17077862-17077596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr24:17078114-17077848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr24:17070438-17070736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr24:17078030-17077732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
41-386
               

               
Cow position:
               
chr25:3663968-3664315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
90-402
               

               
Cow position:
               
chr25:25652946-25653260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
249, 0
               

               
Conread position:
               
90-408
               

               
Cow position:
               
chr25:33506834-33507154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
133, 138
               

               
Conread position:
               
90-424
               

               
Cow position:
               
chr25:4657379-4657043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
92-378
               

               
Cow position:
               
chr25:3636306-3636018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
247, 0
               

               
Conread position:
               
93-294
               

               
Cow position:
               
chr25:25653117-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-341
               

               
Cow position:
               
chr25:33145187-33145435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-366
               

               
Cow position:
               
chr25:326586-326861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
93-375
               

               
Cow position:
               
chr25:3664272-3664556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
242, 0
               

               
Conread position:
               
93-376
               

               
Cow position:
               
chr25:34769867-34769582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
219, 226
               

               
Conread position:
               
93-393
               

               
Cow position:
               
chr25:33530486-33530788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
246, 291
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr25:34769615-34769302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
227, 212
               

               
Conread position:
               
93-408
               

               
Cow position:
               
chr25:3664188-3664505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
243, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr25:25652529-25652852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr25:25652361-25652701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 0
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr25:25652697-25653037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 129
               

               
Conread position:
               
93-443
               

               
Cow position:
               
chr25:3676081-3676432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
93-448
               

               
Cow position:
               
chr25:3675997-3676355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
94-414
               

               
Cow position:
               
chr25:33157299-33156977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 142
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr25:3663944-3664192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
101-404
               

               
Cow position:
               
chr25:34770111-34769806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
210, 203
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr25:34762849-34763090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 177
               

               
Conread position:
               
111-379
               

               
Cow position:
               
chr25:33529205-33529475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr25:33506772-33507041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
204, 208
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr25:34763186-34763455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
112-408
               

               
Cow position:
               
chr25:25652212-25652510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
112-409
               

               
Cow position:
               
chr25:33529122-33529422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
112-414
               

               
Cow position:
               
chr25:33157449-33157145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
116-334
               

               
Cow position:
               
chr25:34763523-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
120-403
               

               
Cow position:
               
chr25:3664131-3664416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
120-404
               

               
Cow position:
               
chr25:25652304-25652590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
122-408
               

               
Cow position:
               
chr25:33530263-33530551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 107
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr25:24398607-24398420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 95
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr25:34473649-34473911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
148-341
               

               
Cow position:
               
chr25:33128030-33128223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
148-376
               

               
Cow position:
               
chr25:33144909-33145136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
197, 128
               

               
Conread position:
               
148-405
               

               
Cow position:
               
chr25:4657405-4657146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr25:25652668-25652930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
187, 236
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chr25:33529074-33529336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
149-333
               

               
Cow position:
               
chr25:34733864-34733680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-348
               

               
Cow position:
               
chr25:33156992-33156791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
149-366
               

               
Cow position:
               
chr25:34732463-34732244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
160, 146
               

               
Conread position:
               
149-375
               

               
Cow position:
               
chr25:34732547-34732319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
149-376
               

               
Cow position:
               
chr25:34769979-34769750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
149-394
               

               
Cow position:
               
chr25:33298876-33299121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
149-404
               

               
Cow position:
               
chr25:34733948-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
187, 239
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr25:33157328-33157061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
166, 171
               

               
Conread position:
               
149-434
               

               
Cow position:
               
chr25:34446999-34447286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 83
               

               
Conread position:
               
149-446
               

               
Cow position:
               
chr25:34447083-34447383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
150-376
               

               
Cow position:
               
chr25:33299129-33299357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
150-406
               

               
Cow position:
               
chr25:34763392-34763647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr25:25652922-25653182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
150-408
               

               
Cow position:
               
chr25:33530459-33530719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
189, 234
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr25:33127864-33128130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
150-431
               

               
Cow position:
               
chr25:33127948-33128231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
159, 150
               

               
Conread position:
               
151-347
               

               
Cow position:
               
chr25:33299046-33299244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 61
               

               
Conread position:
               
151-366
               

               
Cow position:
               
chr25:326560-326777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr25:34769893-34769667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:25653091-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:33298710-33298937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:33299466-33299693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:36801522-36801749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
151-379
               

               
Cow position:
               
chr25:33298794-33299024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-379
               

               
Cow position:
               
chr25:34473570-34473800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr25:34769641-34769404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-391
               

               
Cow position:
               
chr25:36800946-36801186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr25:33127781-33128034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr25:33157158-33156905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
164, 169
               

               
Conread position:
               
151-402
               

               
Cow position:
               
chr25:34763141-34763394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
151-409
               

               
Cow position:
               
chr25:34763060-34763317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
185, 61
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr25:22235892-22236157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr25:22236060-22236325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 169
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr25:33157074-33156809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 84
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr25:33157494-33157229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
151-430
               

               
Cow position:
               
chr25:3636415-3636134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr25:33298626-33298908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 268
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr25:34447253-34447551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 78
               

               
Conread position:
               
154-414
               

               
Cow position:
               
chr25:36844638-36844376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
158-337
               

               
Cow position:
               
chr25:3664421-3664600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
155, 160
               

               
Conread position:
               
158-415
               

               
Cow position:
               
chr25:24385010-24384751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
162, 157
               

               
Conread position:
               
160-376
               

               
Cow position:
               
chr25:33145170-33145388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
162-427
               

               
Cow position:
               
chr25:427319-427586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
163-404
               

               
Cow position:
               
chr25:34473834-34474074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
174, 22
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chr25:23267254-23267013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
169-431
               

               
Cow position:
               
chr25:34732611-34732347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 151
               

               
Conread position:
               
169-455
               

               
Cow position:
               
chr25:34734012-34733724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
168, 284
               

               
Conread position:
               
172-379
               

               
Cow position:
               
chr25:3675992-3676201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
172-397
               

               
Cow position:
               
chr25:414696-414469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
172-408
               

               
Cow position:
               
chr25:25652188-25652426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
144, 148
               

               
Conread position:
               
173-408
               

               
Cow position:
               
chr25:3663932-3664169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr25:4657463-4657249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
174-404
               

               
Cow position:
               
chr25:33298565-33298797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr28:34696337-34696590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr28:34696001-34696296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr28:33210252-33210544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
174, 188
               

               
Conread position:
               
149-414
               

               
Cow position:
               
chr28:33210373-33210641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
165, 171
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr28:34696143-34696408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr28:34696227-34696492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr28:34696323-34696576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr3:20194976-20195268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
138, 132
               

               
Conread position:
               
103-408
               

               
Cow position:
               
chr3:20194821-20195128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
112-448
               

               
Cow position:
               
chr3:20194746-20195085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
231, 242
               

               
Conread position:
               
146-324
               

               
Cow position:
               
chr3:62721762-62721585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
165, 5
               

               
Conread position:
               
151-348
               

               
Cow position:
               
chr3:68045748-68045947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
155-408
               

               
Cow position:
               
chr3:20194957-20195212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
161, 165
               

               
Conread position:
               
172-422
               

               
Cow position:
               
chr3:20194446-20194698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
177-408
               

               
Cow position:
               
chr3:20194727-20194960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
103-408
               

               
Cow position:
               
chr4:65494836-65494529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
241, 287
               

               
Conread position:
               
111-408
               

               
Cow position:
               
chr4:65703560-65703261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr4:65703436-65703171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
188, 239
               

               
Conread position:
               
167-404
               

               
Cow position:
               
chr4:65146415-65146654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
172-405
               

               
Cow position:
               
chr4:65121785-65122020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
179-405
               

               
Cow position:
               
chr4:65157938-65158169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
218-414
               

               
Cow position:
               
chr5:25884664-25884466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
93-379
               

               
Cow position:
               
chr6:49428737-49429025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
93-384
               

               
Cow position:
               
chr6:49428905-49429198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr6:49428317-49428640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
98, 103
               

               
Conread position:
               
93-438
               

               
Cow position:
               
chr6:49429157-49429502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
111-431
               

               
Cow position:
               
chr6:49428587-49428909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
145-384
               

               
Cow position:
               
chr6:49341049-49341290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
161, 174
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr6:49340634-49340826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-414
               

               
Cow position:
               
chr6:49428542-49428808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
189, 233
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr6:49340971-49341198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr6:49340887-49341122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chr6:49340719-49340963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
151-397
               

               
Cow position:
               
chr6:49340467-49340715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr6:49429047-49429312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
88, 78
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chr6:49429131-49429413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
192, 205
               

               
Conread position:
               
151-448
               

               
Cow position:
               
chr6:49428291-49428591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
185, 233
               

               
Conread position:
               
151-448
               

               
Cow position:
               
chr6:49428879-49429179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
186, 253
               

               
Conread position:
               
161-414
               

               
Cow position:
               
chr6:49428469-49428724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
169-414
               

               
Cow position:
               
chr6:49428224-49428472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
6, 192
               

               
Conread position:
               
90-415
               

               
Cow position:
               
chr7:12293602-12293929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 145
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr7:12293404-12293670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 84
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr7:12293572-12293838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
169, 176
               

               
Conread position:
               
144-408
               

               
Cow position:
               
chr7:28846563-28846829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 78
               

               
Conread position:
               
149-403
               

               
Cow position:
               
chr7:18390223-18390479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr7:12293325-12293586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
150-386
               

               
Cow position:
               
chr7:18390476-18390714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
150-394
               

               
Cow position:
               
chr7:18390308-18390552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
151-379
               

               
Cow position:
               
chr7:42878961-42878731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr7:18390393-18390628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
160, 153
               

               
Conread position:
               
151-446
               

               
Cow position:
               
chr7:42878709-42878411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
191, 238
               

               
Conread position:
               
163-334
               

               
Cow position:
               
chr7:18390573-18390744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-405
               

               
Cow position:
               
chr7:12293269-12293499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 143
               

               
Conread position:
               
148-414
               

               
Cow position:
               
chr8:55580882-55581150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 234
               

               
Conread position:
               
149-342
               

               
Cow position:
               
chr8:55581135-55581328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-386
               

               
Cow position:
               
chrX:14181283-14181006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
230, 0
               

               
Conread position:
               
145-431
               

               
Cow position:
               
chrX:13826891-13826603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
146-414
               

               
Cow position:
               
chrX:13826722-13826452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 82
               

               
Conread position:
               
148-376
               

               
Cow position:
               
chrX:25324939-25324709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
148-408
               

               
Cow position:
               
chrX:14181414-14181152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
149-404
               

               
Cow position:
               
chrX:13826551-13826294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 171
               

               
Conread position:
               
149-415
               

               
Cow position:
               
chrX:14181329-14181061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
171, 167
               

               
Conread position:
               
149-455
               

               
Cow position:
               
chrX:13826635-13826327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
190, 233
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chrX:25324768-25324541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
151-408
               

               
Cow position:
               
chrX:13826465-13826206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 61