Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_D23.5 |
| Conread position: | 582-727 |
| Cow position: | chr10:25924961-25925109 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 328-573 |
| Cow position: | chr11:19683233-19682994 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 223, 47 |
| Conread position: | 328-574 |
| Cow position: | chr11:39869104-39869343 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 150, 47 |
| Conread position: | 579-722 |
| Cow position: | chr11:23051036-23051182 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 580-727 |
| Cow position: | chr11:41451213-41451363 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 328-465 |
| Cow position: | chr12:24006407-24006266 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 351-555 |
| Cow position: | chr12:4542956-4543157 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 104 |
| Conread position: | 477-728 |
| Cow position: | chr12:24006108-24005851 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 132, 91 |
| Conread position: | 477-671 |
| Cow position: | chr13:46460072-46460265 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 132, 56 |
| Conread position: | 583-727 |
| Cow position: | chr13:32703991-32704140 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 327-574 |
| Cow position: | chr14:25435751-25435514 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 570-713 |
| Cow position: | chr14:38339764-38339619 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 342-551 |
| Cow position: | chr15:33154651-33154860 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 358-585 |
| Cow position: | chr16:17036259-17036470 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 328-575 |
| Cow position: | chr17:21653120-21653356 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 570-720 |
| Cow position: | chr17:37403219-37403377 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 328-551 |
| Cow position: | chr19:28467571-28467776 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 338-565 |
| Cow position: | chr19:35608187-35608405 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 128 |
| Conread position: | 553-727 |
| Cow position: | chr19:28468295-28468459 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 328-575 |
| Cow position: | chr21:20776627-20776388 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 84, 107 |
| Conread position: | 334-575 |
| Cow position: | chr22:12668204-12667972 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 512-715 |
| Cow position: | chr22:4019268-4019069 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 372-587 |
| Cow position: | chr23:22960277-22960487 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 571-715 |
| Cow position: | chr23:22225385-22225532 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 573-715 |
| Cow position: | chr23:20712985-20713131 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 328-730 |
| Cow position: | chr24:19653274-19652885 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 111 |
| Conread position: | 328-586 |
| Cow position: | chr25:28361561-28361810 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 584-727 |
| Cow position: | chr25:23826771-23826627 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 580-730 |
| Cow position: | chr29:40057909-40058065 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 327-585 |
| Cow position: | chr3:27127403-27127160 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 327-585 |
| Cow position: | chr3:73426927-73426681 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 327-680 |
| Cow position: | chr3:27559841-27559474 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 335 |
| Conread position: | 336-561 |
| Cow position: | chr3:67825020-67824805 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 110 |
| Conread position: | 572-713 |
| Cow position: | chr3:17201993-17202138 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 583-696 |
| Cow position: | chr3:23185504-23185620 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 328-577 |
| Cow position: | chr4:44417924-44417684 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 412-702 |
| Cow position: | chr4:11842817-11843097 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 45 |
| Conread position: | 477-730 |
| Cow position: | chr5:38590913-38590663 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 512-721 |
| Cow position: | chr5:68085887-68085669 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 570-721 |
| Cow position: | chr5:68086598-68086752 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 328-585 |
| Cow position: | chr6:340616-340859 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 583-718 |
| Cow position: | chr6:48020179-48020041 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 585-727 |
| Cow position: | chr6:5312005-5312150 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 583-730 |
| Cow position: | chr9:20766373-20766517 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 327-574 |
| Cow position: | chrX:21292614-21292854 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 583-721 |
| Cow position: | chrX:26592071-26592213 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |