Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010079A09.5 |
| Conread position: | 70-472 |
| Cow position: | chr1:93018172-93018575 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 145-539 |
| Cow position: | chr1:62769008-62768623 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 490-639 |
| Cow position: | chr1:93018721-93018870 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 626-918 |
| Cow position: | chr1:93019090-93019360 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 907-1318 |
| Cow position: | chr1:93021763-93022169 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 350-1212 |
| Cow position: | chr10:16293756-16294607 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 792 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1193-1399 |
| Cow position: | chr10:16294866-16295067 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 1193-1389 |
| Cow position: | chr11:40227149-40227333 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1220-1524 |
| Cow position: | chr11:34381188-34381491 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 91 |
| Conread position: | 7-1522 |
| Cow position: | chr13:34973321-34971827 (view UCSC Genome Browser custom track) |
| Alignm length: | 1552 |
| Alignm identity: | 1250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 8 |
| Conread position: | 80-1418 |
| Cow position: | chr13:33341300-33340027 (view UCSC Genome Browser custom track) |
| Alignm length: | 1342 |
| Alignm identity: | 1118 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 34-1399 |
| Cow position: | chr2:76342885-76341532 (view UCSC Genome Browser custom track) |
| Alignm length: | 1384 |
| Alignm identity: | 1231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 110-643 |
| Cow position: | chr2:84257826-84257294 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 219 |
| Conread position: | 144-538 |
| Cow position: | chr2:5916227-5916612 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 338, 73 |
| Conread position: | 20-403 |
| Cow position: | chr20:18101303-18100936 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 581-772 |
| Cow position: | chr20:18099219-18099038 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 791-1393 |
| Cow position: | chr20:18097268-18096672 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 102 |
| Conread position: | 20-1427 |
| Cow position: | chr21:39567522-39566123 (view UCSC Genome Browser custom track) |
| Alignm length: | 1417 |
| Alignm identity: | 1317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 301 |
| Conread position: | 114-304 |
| Cow position: | chr21:47466040-47466229 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 5-1000 |
| Cow position: | chr23:9542458-9541460 (view UCSC Genome Browser custom track) |
| Alignm length: | 1000 |
| Alignm identity: | 940 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 704 |
| Conread position: | 1196-1389 |
| Cow position: | chr23:26384146-26383963 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 19-1520 |
| Cow position: | chr25:2045156-2043658 (view UCSC Genome Browser custom track) |
| Alignm length: | 1517 |
| Alignm identity: | 1407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 1029 |
| Conread position: | 5-947 |
| Cow position: | chr3:44434848-44435779 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 852 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 94 |
| Conread position: | 22-1098 |
| Cow position: | chr3:28699164-28700218 (view UCSC Genome Browser custom track) |
| Alignm length: | 1084 |
| Alignm identity: | 940 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 22-1254 |
| Cow position: | chr3:42725886-42727105 (view UCSC Genome Browser custom track) |
| Alignm length: | 1242 |
| Alignm identity: | 1125 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 274 |
| Conread position: | 98-359 |
| Cow position: | chr3:187771-187508 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 1148-1524 |
| Cow position: | chr3:28700597-28700224 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 65 |
| Conread position: | 1225-1524 |
| Cow position: | chr3:42727102-42727407 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 1414-1524 |
| Cow position: | chr3:44436305-44436413 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 23-1178 |
| Cow position: | chr4:25799496-25800596 (view UCSC Genome Browser custom track) |
| Alignm length: | 1162 |
| Alignm identity: | 816 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 69 |
| Conread position: | 240-808 |
| Cow position: | chr4:49740476-49739914 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 0 |
| Conread position: | 48-661 |
| Cow position: | chr5:52104014-52103402 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 94-216 |
| Cow position: | chr5:16536292-16536170 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 122 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-360 |
| Cow position: | chr5:16535902-16535754 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-575 |
| Cow position: | chr5:16535617-16535402 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 566-665 |
| Cow position: | chr5:16535317-16535218 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-661 |
| Cow position: | chr5:52103329-52103256 (view UCSC Genome Browser custom track) |
| Alignm length: | 74 |
| Alignm identity: | 70 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-661 |
| Cow position: | chr5:52103402-52103329 (view UCSC Genome Browser custom track) |
| Alignm length: | 74 |
| Alignm identity: | 71 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-1524 |
| Cow position: | chr5:52103256-52102336 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 810 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 842, 269 |
| Conread position: | 662-766 |
| Cow position: | chr5:16535132-16535028 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 752-874 |
| Cow position: | chr5:16534804-16534684 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 97 |
| Conread position: | 831-989 |
| Cow position: | chr5:16533823-16533665 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1054-1520 |
| Cow position: | chr5:16533128-16532669 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 153 |
| Conread position: | 116-375 |
| Cow position: | chr6:37086147-37086412 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 208, 63 |
| Conread position: | 748-955 |
| Cow position: | chr6:39581390-39581606 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 784-1108 |
| Cow position: | chr6:37086537-37086854 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 22-362 |
| Cow position: | chr7:49104181-49104516 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 70-595 |
| Cow position: | chr7:11575168-11574651 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 102-619 |
| Cow position: | chr7:14433501-14434018 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-625 |
| Cow position: | chr7:27793630-27793110 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 102-638 |
| Cow position: | chr7:14408487-14409023 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-808 |
| Cow position: | chr7:11454856-11455550 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 549, 528 |
| Conread position: | 114-637 |
| Cow position: | chr7:37344192-37343669 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-557 |
| Cow position: | chr7:49104516-49104690 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 726-1301 |
| Cow position: | chr7:49105380-49105960 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 105 |
| Conread position: | 7-182 |
| Cow position: | chr8:53119107-53118930 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 23-1031 |
| Cow position: | chr8:40436658-40435665 (view UCSC Genome Browser custom track) |
| Alignm length: | 1011 |
| Alignm identity: | 881 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 168-718 |
| Cow position: | chr8:53118794-53118249 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 113 |
| Conread position: | 638-1316 |
| Cow position: | chr8:53118354-53117691 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 1018-1524 |
| Cow position: | chr8:40435403-40434879 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 1377-1508 |
| Cow position: | chr8:53117381-53117249 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 71-1520 |
| Cow position: | chr9:20570064-20571496 (view UCSC Genome Browser custom track) |
| Alignm length: | 1459 |
| Alignm identity: | 1331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 873, 91 |
| Conread position: | 213-850 |
| Cow position: | chr9:57166600-57165966 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 103 |
| Conread position: | 748-955 |
| Cow position: | chr9:57165930-57165714 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 19-1315 |
| Cow position: | chrX:38794952-38796214 (view UCSC Genome Browser custom track) |
| Alignm length: | 1301 |
| Alignm identity: | 1100 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 52 |