Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010102H02.5.5 |
| Conread position: | 22-1600 |
| Cow position: | chr1:8908500-8906980 (view UCSC Genome Browser custom track) |
| Alignm length: | 1582 |
| Alignm identity: | 1169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 38 |
| Conread position: | 30-310 |
| Cow position: | chr1:159423-159697 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 90-1488 |
| Cow position: | chr1:53021996-53020645 (view UCSC Genome Browser custom track) |
| Alignm length: | 1403 |
| Alignm identity: | 939 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 118 |
| Conread position: | 295-474 |
| Cow position: | chr1:159701-159879 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 728-1058 |
| Cow position: | chr1:160011-160324 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 151 |
| Conread position: | 1067-1286 |
| Cow position: | chr1:160479-160685 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 1317-1637 |
| Cow position: | chr1:160689-160994 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 24 |
| Conread position: | 1634-1766 |
| Cow position: | chr1:8906742-8906616 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1663-1769 |
| Cow position: | chr1:161236-161343 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1702-1818 |
| Cow position: | chr1:47480032-47479918 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 22-905 |
| Cow position: | chr10:14624199-14623324 (view UCSC Genome Browser custom track) |
| Alignm length: | 887 |
| Alignm identity: | 739 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 29 |
| Conread position: | 931-1704 |
| Cow position: | chr10:14623326-14622577 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 657 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 86 |
| Conread position: | 1619-1780 |
| Cow position: | chr10:40314915-40314758 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 22-560 |
| Cow position: | chr11:67285776-67285243 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 546-1766 |
| Cow position: | chr11:67285180-67283971 (view UCSC Genome Browser custom track) |
| Alignm length: | 1223 |
| Alignm identity: | 1095 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1086, 275 |
| Conread position: | 1441-1775 |
| Cow position: | chr11:19728267-19728604 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 1485-1697 |
| Cow position: | chr12:30842624-30842835 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 57-236 |
| Cow position: | chr13:35468433-35468612 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 232-425 |
| Cow position: | chr13:35470152-35470345 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-700 |
| Cow position: | chr13:35470777-35471066 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 704-863 |
| Cow position: | chr13:35471440-35471599 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 861-1121 |
| Cow position: | chr13:35472576-35472836 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1116-1354 |
| Cow position: | chr13:35473435-35473673 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-775 |
| Cow position: | chr15:53153162-53152658 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1116-1345 |
| Cow position: | chr15:2142233-2142010 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 1361-1769 |
| Cow position: | chr15:2109183-2109591 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 113 |
| Conread position: | 342-585 |
| Cow position: | chr16:21451861-21451622 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 411-578 |
| Cow position: | chr16:23530202-23530036 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 22-1420 |
| Cow position: | chr18:1651975-1650577 (view UCSC Genome Browser custom track) |
| Alignm length: | 1400 |
| Alignm identity: | 1293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1190, 58 |
| Conread position: | 23-482 |
| Cow position: | chr19:15553988-15554461 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 528-847 |
| Cow position: | chr19:15554485-15554801 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 73 |
| Conread position: | 841-1037 |
| Cow position: | chr19:15556037-15556229 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1026-1613 |
| Cow position: | chr19:15558460-15559026 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 156 |
| Conread position: | 1430-1781 |
| Cow position: | chr19:42922990-42922638 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 111 |
| Conread position: | 1120-1352 |
| Cow position: | chr2:82503705-82503473 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 1352-1829 |
| Cow position: | chr2:1241707-1242176 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 214 |
| Conread position: | 453-841 |
| Cow position: | chr22:12531567-12531179 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 840-1677 |
| Cow position: | chr22:35736727-35737564 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 736 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1490-1767 |
| Cow position: | chr22:45621442-45621165 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 184 |
| Conread position: | 1645-1766 |
| Cow position: | chr22:35737557-35737675 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 118 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1532-1768 |
| Cow position: | chr23:5423183-5422949 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1478-1772 |
| Cow position: | chr24:15448904-15448614 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1549-1778 |
| Cow position: | chr24:32145170-32145397 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 118 |
| Conread position: | 129-920 |
| Cow position: | chr27:30548643-30549409 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 957-1770 |
| Cow position: | chr27:30549498-30550303 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 647 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 1299-1772 |
| Cow position: | chr27:14706810-14706354 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 32 |
| Conread position: | 1642-1753 |
| Cow position: | chr28:13881686-13881575 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 823-1700 |
| Cow position: | chr3:2885405-2886299 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 733 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 285 |
| Conread position: | 934-1766 |
| Cow position: | chr3:17722738-17723568 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 756 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 814, 521 |
| Conread position: | 1022-1226 |
| Cow position: | chr3:54640795-54640599 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 1348-1694 |
| Cow position: | chr3:54640533-54640192 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 119, 139 |
| Conread position: | 1481-1744 |
| Cow position: | chr4:46919301-46919553 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 22-1366 |
| Cow position: | chr5:25251573-25252916 (view UCSC Genome Browser custom track) |
| Alignm length: | 1345 |
| Alignm identity: | 1193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 23-379 |
| Cow position: | chr5:2001326-2001678 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 57 |
| Conread position: | 445-1778 |
| Cow position: | chr5:2001949-2003197 (view UCSC Genome Browser custom track) |
| Alignm length: | 1349 |
| Alignm identity: | 1046 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 87 |
| Conread position: | 1244-1774 |
| Cow position: | chr5:62310867-62311380 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1361-1774 |
| Cow position: | chr5:61090913-61090500 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 35 |
| Conread position: | 1621-1780 |
| Cow position: | chr6:55004366-55004211 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 141 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 22-1766 |
| Cow position: | chr7:63143974-63142257 (view UCSC Genome Browser custom track) |
| Alignm length: | 1749 |
| Alignm identity: | 1512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 696, 51 |
| Conread position: | 22-1779 |
| Cow position: | chr7:65487930-65486195 (view UCSC Genome Browser custom track) |
| Alignm length: | 1766 |
| Alignm identity: | 1518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 696, 51 |
| Conread position: | 25-758 |
| Cow position: | chr7:63518494-63517768 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 55 |
| Conread position: | 791-1384 |
| Cow position: | chr7:63517765-63517173 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 0 |
| Conread position: | 59-971 |
| Cow position: | chr9:24248716-24247806 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 783 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 981-1782 |
| Cow position: | chr9:24247859-24247057 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 700 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 651, 686 |