Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01A040014.5 |
| Conread position: | 3-220 |
| Cow position: | chr1:19395924-19396143 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 147 |
| Conread position: | 8-205 |
| Cow position: | chr1:70202336-70202534 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 29-1040 |
| Cow position: | chr1:69181535-69182535 (view UCSC Genome Browser custom track) |
| Alignm length: | 1029 |
| Alignm identity: | 751 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 256-1043 |
| Cow position: | chr1:70202646-70203422 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 177 |
| Conread position: | 129-520 |
| Cow position: | chr10:18121029-18121413 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 53 |
| Conread position: | 708-929 |
| Cow position: | chr10:44457490-44457283 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 776-889 |
| Cow position: | chr13:1619105-1618992 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 886-1055 |
| Cow position: | chr13:1619022-1618844 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 404-658 |
| Cow position: | chr16:7128523-7128770 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 476-1017 |
| Cow position: | chr16:7130098-7130652 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 82 |
| Conread position: | 672-843 |
| Cow position: | chr16:7128806-7128978 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 2-150 |
| Cow position: | chr17:38409205-38409058 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 137-890 |
| Cow position: | chr17:38408848-38408105 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 200 |
| Conread position: | 695-880 |
| Cow position: | chr17:42737734-42737545 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 695-883 |
| Cow position: | chr17:42690025-42689833 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 7-477 |
| Cow position: | chr2:4773230-4773679 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 15 |
| Conread position: | 3-312 |
| Cow position: | chr22:840829-840534 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 8-142 |
| Cow position: | chr22:10589461-10589595 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-309 |
| Cow position: | chr22:19411327-19411033 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 224 |
| Conread position: | 30-205 |
| Cow position: | chr22:10071551-10071728 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 204-344 |
| Cow position: | chr22:10072842-10072980 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 292-931 |
| Cow position: | chr22:19410827-19410207 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 28 |
| Conread position: | 320-570 |
| Cow position: | chr22:10081813-10082063 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 341-844 |
| Cow position: | chr22:840533-840038 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 147 |
| Conread position: | 568-698 |
| Cow position: | chr22:10082810-10082940 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 123 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 689-864 |
| Cow position: | chr22:10083049-10083225 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 855-966 |
| Cow position: | chr22:10083324-10083435 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 686-1048 |
| Cow position: | chr23:30246374-30246742 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 106-765 |
| Cow position: | chr24:40365538-40364897 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 26 |
| Conread position: | 124-899 |
| Cow position: | chr24:17028343-17027571 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 432-908 |
| Cow position: | chr25:2096132-2095691 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 31 |
| Conread position: | 1-264 |
| Cow position: | chr28:27244416-27244153 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-978 |
| Cow position: | chr28:17579943-17580797 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 740 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 868, 101 |
| Conread position: | 149-790 |
| Cow position: | chr28:20001264-20001895 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 35 |
| Conread position: | 269-752 |
| Cow position: | chr28:27244119-27243664 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 799-1035 |
| Cow position: | chr28:20002111-20002339 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 188, 28 |
| Conread position: | 2-625 |
| Cow position: | chr29:45633166-45632564 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 691-886 |
| Cow position: | chr29:45632102-45631909 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 4-445 |
| Cow position: | chr3:13440156-13439746 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 78-478 |
| Cow position: | chr3:23874972-23874575 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 465-1065 |
| Cow position: | chr3:13439746-13439155 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 518-1023 |
| Cow position: | chr3:23874580-23874085 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 166 |
| Conread position: | 567-978 |
| Cow position: | chr3:41697843-41698256 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 720-978 |
| Cow position: | chr3:58277837-58278105 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 3-641 |
| Cow position: | chr4:42104386-42105036 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 61 |
| Conread position: | 564-846 |
| Cow position: | chr4:4973797-4973519 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 118 |
| Conread position: | 688-1069 |
| Cow position: | chr4:42105245-42105621 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 16-1042 |
| Cow position: | chr5:12262653-12261709 (view UCSC Genome Browser custom track) |
| Alignm length: | 1031 |
| Alignm identity: | 737 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 646, 6 |
| Conread position: | 564-1040 |
| Cow position: | chr5:32566769-32567259 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 360 |
| Conread position: | 7-168 |
| Cow position: | chr6:58470328-58470490 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 877-1035 |
| Cow position: | chr6:58470490-58470641 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 64-795 |
| Cow position: | chr8:49967829-49967132 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 36 |
| Conread position: | 851-1052 |
| Cow position: | chr8:49967108-49966909 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 10-617 |
| Cow position: | chrX:26023013-26022406 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-534 |
| Cow position: | chrX:486387-486868 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 65 |
| Conread position: | 88-596 |
| Cow position: | chrX:5516684-5517177 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 31 |
| Conread position: | 518-1017 |
| Cow position: | chrX:486873-487361 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 879-1039 |
| Cow position: | chrX:26022317-26022162 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 85 |