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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01B120076.5
        

               
Conread position:
               
1-315
               

               
Cow position:
               
chr1:78754593-78754894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:79869309-79869614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 84
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr1:100151139-100151427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
166, 126
               

               
Conread position:
               
7-498
               

               
Cow position:
               
chr1:50899306-50898834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
226, 88
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:93693398-93693148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr1:79974469-79974260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
173, 15
               

               
Conread position:
               
14-322
               

               
Cow position:
               
chr1:79931948-79932248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 215
               

               
Conread position:
               
21-224
               

               
Cow position:
               
chr1:78199926-78200129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
152, 112
               

               
Conread position:
               
29-315
               

               
Cow position:
               
chr1:93434799-93435089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
41-246
               

               
Cow position:
               
chr1:4272472-4272678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
52-315
               

               
Cow position:
               
chr1:62266066-62266330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 81
               

               
Conread position:
               
52-537
               

               
Cow position:
               
chr1:3240519-3240993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
124, 81
               

               
Conread position:
               
78-224
               

               
Cow position:
               
chr1:65869971-65870115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr10:5149068-5149494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
175, 44
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr10:173201-173464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr10:55147302-55147605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr10:69634079-69633777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
10-520
               

               
Cow position:
               
chr10:30061160-30060665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 124
               

               
Conread position:
               
20-498
               

               
Cow position:
               
chr10:51292389-51292859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
33-334
               

               
Cow position:
               
chr10:15171946-15171660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
229, 24
               

               
Conread position:
               
47-528
               

               
Cow position:
               
chr10:16295617-16295119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
65-264
               

               
Cow position:
               
chr10:215650-215451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
7-313
               

               
Cow position:
               
chr11:19226057-19226355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
166, 45
               

               
Conread position:
               
7-483
               

               
Cow position:
               
chr11:37716891-37716426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
226, 61
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr11:42341517-42341304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
162, 129
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr11:10329140-10329444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
11-213
               

               
Cow position:
               
chr11:56797615-56797815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
11-473
               

               
Cow position:
               
chr11:75199192-75199644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 148
               

               
Conread position:
               
61-241
               

               
Cow position:
               
chr11:68480982-68481162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
161, 71
               

               
Conread position:
               
12-317
               

               
Cow position:
               
chr12:22320739-22321046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr13:41203567-41203784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 118
               

               
Conread position:
               
7-482
               

               
Cow position:
               
chr13:47656331-47656800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 89
               

               
Conread position:
               
12-317
               

               
Cow position:
               
chr13:31538745-31538441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
16-492
               

               
Cow position:
               
chr13:17300058-17300522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 263
               

               
Conread position:
               
17-312
               

               
Cow position:
               
chr13:16911087-16910801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
21-332
               

               
Cow position:
               
chr13:55184497-55184808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
47-281
               

               
Cow position:
               
chr13:60619814-60620043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr14:40066457-40066228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
181, 128
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr14:43187419-43187111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
45-491
               

               
Cow position:
               
chr14:43343600-43344023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 56
               

               
Conread position:
               
7-528
               

               
Cow position:
               
chr15:51238517-51239035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
19-318
               

               
Cow position:
               
chr15:17165134-17165433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
169, 33
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr15:30234141-30234432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 23
               

               
Conread position:
               
43-539
               

               
Cow position:
               
chr15:28615170-28615666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
78-524
               

               
Cow position:
               
chr15:41919650-41920093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
1-145
               

               
Cow position:
               
chr16:20426412-20426556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 133
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr16:14610828-14611045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr16:35498317-35498536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
10-216
               

               
Cow position:
               
chr16:51561058-51560853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
10-269
               

               
Cow position:
               
chr16:11168850-11169107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
167, 66
               

               
Conread position:
               
10-312
               

               
Cow position:
               
chr16:50541972-50542279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr16:7112576-7112862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
20-510
               

               
Cow position:
               
chr16:21591806-21592269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
7-516
               

               
Cow position:
               
chr17:19307549-19307057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr17:22467915-22467620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
19-528
               

               
Cow position:
               
chr17:32947586-32947100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
196, 21
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr18:17306588-17306950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr18:22165064-22164648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr18:17107683-17107463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
166, 48
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr18:43836396-43836704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 18
               

               
Conread position:
               
35-482
               

               
Cow position:
               
chr18:38344329-38343896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 233
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr19:4479601-4479474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr19:42223805-42223501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
7-528
               

               
Cow position:
               
chr19:11875743-11875226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr19:30140872-30141177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
10-464
               

               
Cow position:
               
chr19:48751763-48751317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chr19:1059742-1059519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 31
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chr2:45115630-45115181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 167
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr2:38813159-38812666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 111
               

               
Conread position:
               
7-160
               

               
Cow position:
               
chr2:45400250-45400399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr2:28284324-28284016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
132, 123
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr2:251462-251058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
19-293
               

               
Cow position:
               
chr2:1625266-1624982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr2:1307343-1307544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr2:80860849-80860554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
7-353
               

               
Cow position:
               
chr21:16764268-16763918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
10-312
               

               
Cow position:
               
chr21:7530583-7530270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr21:8321733-8321427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
25-519
               

               
Cow position:
               
chr21:39235555-39235059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 284
               

               
Conread position:
               
52-521
               

               
Cow position:
               
chr21:41561718-41562181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 139
               

               
Conread position:
               
10-541
               

               
Cow position:
               
chr22:15949986-15949464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
34-478
               

               
Cow position:
               
chr22:791732-792171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
47-250
               

               
Cow position:
               
chr22:12307661-12307459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
126, 5
               

               
Conread position:
               
1-528
               

               
Cow position:
               
chr23:30557931-30558441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
190, 96
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr23:6076260-6075911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
22-219
               

               
Cow position:
               
chr23:4317240-4317436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr24:16587562-16587306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr24:21114905-21115404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 130
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr24:28545635-28545389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
172, 42
               

               
Conread position:
               
12-527
               

               
Cow position:
               
chr24:39132282-39132798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
161, 43
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr25:10728658-10728351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 51
               

               
Conread position:
               
7-216
               

               
Cow position:
               
chr25:16762171-16761966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
166, 62
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr25:30074848-30074613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr25:12258169-12257871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
7-364
               

               
Cow position:
               
chr25:25935333-25935678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
227, 45
               

               
Conread position:
               
7-466
               

               
Cow position:
               
chr26:5309268-5309721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
52-519
               

               
Cow position:
               
chr26:20856628-20857094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 81
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr27:15875375-15875087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
11-503
               

               
Cow position:
               
chr27:16593143-16592690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
19-220
               

               
Cow position:
               
chr27:27004559-27004759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
154, 114
               

               
Conread position:
               
19-529
               

               
Cow position:
               
chr27:29702797-29703306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
57-529
               

               
Cow position:
               
chr27:23027667-23028138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
97, 28
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr28:14687367-14687591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
132, 219
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr28:11868824-11868495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 51
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr28:25558892-25559415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
4-537
               

               
Cow position:
               
chr28:23747543-23747015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr28:28067962-28067740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr28:680552-680350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
207, 7
               

               
Conread position:
               
21-317
               

               
Cow position:
               
chr28:5382326-5382041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
212, 112
               

               
Conread position:
               
7-219
               

               
Cow position:
               
chr29:32759195-32758984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chr29:41326173-41325876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
226, 123
               

               
Conread position:
               
9-367
               

               
Cow position:
               
chr29:13422195-13422556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
10-313
               

               
Cow position:
               
chr29:10623275-10623579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 265
               

               
Conread position:
               
47-459
               

               
Cow position:
               
chr29:12704847-12705267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr3:34231831-34232144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
148, 106
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr3:29991715-29992019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
7-528
               

               
Cow position:
               
chr3:7672447-7671915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr3:51070008-51069697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr3:7833502-7833198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
12-220
               

               
Cow position:
               
chr3:15281576-15281368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr3:13707188-13707485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
22-218
               

               
Cow position:
               
chr3:17637265-17637070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
22-268
               

               
Cow position:
               
chr3:81497708-81497457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
25-537
               

               
Cow position:
               
chr3:19237204-19237719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
43-317
               

               
Cow position:
               
chr3:14035226-14034952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
45-306
               

               
Cow position:
               
chr3:67462072-67461816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
174, 90
               

               
Conread position:
               
50-529
               

               
Cow position:
               
chr3:19990410-19990886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
10-459
               

               
Cow position:
               
chr4:39048170-39047732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
19-528
               

               
Cow position:
               
chr4:7506612-7507109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
214, 33
               

               
Conread position:
               
50-533
               

               
Cow position:
               
chr4:27491754-27492226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
67, 31
               

               
Conread position:
               
52-528
               

               
Cow position:
               
chr4:21872312-21872789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr5:27988758-27988498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
226, 49
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr5:57988821-57988503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr5:13858379-13858063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr5:50909143-50909453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chr5:52672316-52672631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
7-528
               

               
Cow position:
               
chr5:34462770-34462272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 129
               

               
Conread position:
               
10-311
               

               
Cow position:
               
chr5:60898851-60899144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
10-528
               

               
Cow position:
               
chr5:47365850-47366362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
19-255
               

               
Cow position:
               
chr5:8108210-8108445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
43-234
               

               
Cow position:
               
chr5:27871700-27871890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
52-461
               

               
Cow position:
               
chr5:11831793-11831385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
10-464
               

               
Cow position:
               
chr6:3285479-3285027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
17-473
               

               
Cow position:
               
chr6:58475103-58474674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
51-528
               

               
Cow position:
               
chr6:52273166-52272692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr7:44038196-44037899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chr7:4817958-4818268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 126
               

               
Conread position:
               
10-214
               

               
Cow position:
               
chr7:13802444-13802648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr7:13793245-13793523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr7:30546318-30546618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr7:40895834-40896141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
24-311
               

               
Cow position:
               
chr7:30125941-30125652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 275
               

               
Conread position:
               
47-472
               

               
Cow position:
               
chr7:25149721-25150145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
52-316
               

               
Cow position:
               
chr7:13420537-13420271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
60-316
               

               
Cow position:
               
chr7:19085451-19085206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 25
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr8:45295374-45295596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 156
               

               
Conread position:
               
4-519
               

               
Cow position:
               
chr8:8352447-8351923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 129
               

               
Conread position:
               
7-205
               

               
Cow position:
               
chr8:4953362-4953559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr8:2560720-2560413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
19-316
               

               
Cow position:
               
chr8:46964396-46964098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
21-256
               

               
Cow position:
               
chr8:46796643-46796415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 19
               

               
Conread position:
               
21-271
               

               
Cow position:
               
chr8:24494060-24494315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
47-317
               

               
Cow position:
               
chr8:17699920-17699651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
130, 8
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:615811-615599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 168
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr9:10901068-10900741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chr9:9270343-9270053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr9:20982479-20982766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
223, 18
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr9:49368583-49368086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
11-141
               

               
Cow position:
               
chr9:29820967-29820837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
12-315
               

               
Cow position:
               
chr9:55873781-55873478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
82-316
               

               
Cow position:
               
chr9:40231315-40231079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 53
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chrX:34395316-34395537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
10-537
               

               
Cow position:
               
chrX:29686773-29687301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
11-146
               

               
Cow position:
               
chrX:18743223-18743358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 123