Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C030050.5 |
| Conread position: | 679-914 |
| Cow position: | chr1:20046156-20045922 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 695-837 |
| Cow position: | chr1:30672779-30672637 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 702-946 |
| Cow position: | chr1:66218719-66218476 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 702-950 |
| Cow position: | chr1:26053229-26053474 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 713-905 |
| Cow position: | chr1:19437443-19437635 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 713-950 |
| Cow position: | chr10:10149149-10148913 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 695-925 |
| Cow position: | chr11:55423309-55423078 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 139, 65 |
| Conread position: | 702-837 |
| Cow position: | chr11:56106531-56106666 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 713-950 |
| Cow position: | chr11:12262768-12263011 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 714-937 |
| Cow position: | chr11:39432922-39432702 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 10 |
| Conread position: | 690-950 |
| Cow position: | chr13:58217596-58217853 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 702-855 |
| Cow position: | chr13:39393676-39393832 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 683-907 |
| Cow position: | chr14:40880277-40880053 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 80 |
| Conread position: | 704-936 |
| Cow position: | chr14:41920993-41920762 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 1-146 |
| Cow position: | chr15:15184164-15184016 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 175-395 |
| Cow position: | chr15:15179872-15179652 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-527 |
| Cow position: | chr15:15179100-15178969 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 118 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 653-950 |
| Cow position: | chr15:15173156-15172851 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 226 |
| Conread position: | 683-944 |
| Cow position: | chr15:9369163-9368899 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 687-878 |
| Cow position: | chr15:9038364-9038555 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 695-853 |
| Cow position: | chr15:6885067-6884910 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 695-909 |
| Cow position: | chr15:11684913-11684701 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 683-911 |
| Cow position: | chr16:20270955-20271180 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 702-937 |
| Cow position: | chr16:47918875-47918642 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 719-929 |
| Cow position: | chr16:34209516-34209306 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 713-948 |
| Cow position: | chr17:28046477-28046719 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 687-838 |
| Cow position: | chr19:40050675-40050826 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 6, 83 |
| Conread position: | 702-950 |
| Cow position: | chr2:21652347-21652596 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 713-911 |
| Cow position: | chr21:15532788-15532597 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 130, 54 |
| Conread position: | 714-950 |
| Cow position: | chr21:28173552-28173793 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 680-947 |
| Cow position: | chr22:31557435-31557710 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 692-937 |
| Cow position: | chr24:15344743-15344492 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 692-907 |
| Cow position: | chr25:15309671-15309459 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 692-949 |
| Cow position: | chr25:22935723-22935465 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 43 |
| Conread position: | 702-837 |
| Cow position: | chr25:27815345-27815212 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 713-851 |
| Cow position: | chr25:11149317-11149453 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 676-950 |
| Cow position: | chr26:19326899-19326629 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 683-862 |
| Cow position: | chr26:25966314-25966132 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 86 |
| Conread position: | 690-911 |
| Cow position: | chr26:21638896-21639115 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 713-914 |
| Cow position: | chr26:19082411-19082211 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 692-849 |
| Cow position: | chr28:23094915-23094758 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 702-944 |
| Cow position: | chr28:32633519-32633767 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 134, 52 |
| Conread position: | 681-834 |
| Cow position: | chr29:29298643-29298491 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 683-950 |
| Cow position: | chr3:41854777-41855045 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 160, 71 |
| Conread position: | 702-911 |
| Cow position: | chr3:62911072-62911282 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 704-936 |
| Cow position: | chr3:43196883-43196646 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 134, 66 |
| Conread position: | 702-950 |
| Cow position: | chr4:34492148-34492401 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 713-950 |
| Cow position: | chr4:23888608-23888852 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 714-929 |
| Cow position: | chr4:52253092-52252873 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 717-914 |
| Cow position: | chr4:33442963-33443158 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 702-952 |
| Cow position: | chr5:63828009-63828260 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 720-944 |
| Cow position: | chr5:27201176-27201402 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 702-930 |
| Cow position: | chr7:55810836-55810607 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 683-924 |
| Cow position: | chr8:49529450-49529696 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 186 |
| Conread position: | 702-930 |
| Cow position: | chr9:42930809-42931038 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 702-950 |
| Cow position: | chr9:35747672-35747931 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 713-911 |
| Cow position: | chr9:34956100-34956295 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 715-901 |
| Cow position: | chr9:5880290-5880101 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 683-950 |
| Cow position: | chrX:19556704-19556443 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 683-950 |
| Cow position: | chrX:39383384-39383655 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 85 |