Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-LyN1-MLN01C120006.5
        

               Conread position:
               1-129
               

               Cow position:
               chr10:183039-183169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               289-599
               

               Cow position:
               chr10:19715468-19715153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               13, 116
               

               Conread position:
               289-634
               

               Cow position:
               chr10:37060506-37060857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-642
               

               Cow position:
               chr10:123894-124245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               289-642
               

               Cow position:
               chr10:22100819-22101177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               13, 57
               

               Conread position:
               289-642
               

               Cow position:
               chr10:32650317-32650668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               289-642
               

               Cow position:
               chr10:57990387-57990028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               13, 205
               

               Conread position:
               289-684
               

               Cow position:
               chr10:7283103-7282704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               266
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               289-756
               

               Cow position:
               chr10:1375113-1375598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 55
               

               Conread position:
               296-675
               

               Cow position:
               chr10:57559964-57559576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               26, 213
               

               Conread position:
               296-681
               

               Cow position:
               chr10:51953019-51952627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               26, 298
               

               Conread position:
               296-684
               

               Cow position:
               chr10:281037-280638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               296-684
               

               Cow position:
               chr10:14803418-14803816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               26, 318
               

               Conread position:
               296-684
               

               Cow position:
               chr10:32577884-32578284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               26, 321
               

               Conread position:
               296-684
               

               Cow position:
               chr10:39179376-39179765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               26, 165
               

               Conread position:
               296-684
               

               Cow position:
               chr10:39817761-39817369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               262
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               6, 20
               

               Conread position:
               296-684
               

               Cow position:
               chr10:41157039-41157429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               26, 191
               

               Conread position:
               296-684
               

               Cow position:
               chr10:41876506-41876900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               296-712
               

               Cow position:
               chr10:38345780-38345349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               6, 199
               

               Conread position:
               300-684
               

               Cow position:
               chr10:37769414-37769804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               272
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               301-628
               

               Cow position:
               chr10:34318665-34318347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               73, 36
               

               Conread position:
               301-642
               

               Cow position:
               chr10:29847022-29846674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 194
               

               Conread position:
               301-642
               

               Cow position:
               chr10:39041716-39041370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               38, 192
               

               Conread position:
               301-712
               

               Cow position:
               chr10:19143749-19143325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               301-712
               

               Cow position:
               chr10:62409263-62408842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               279
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               35, 160
               

               Conread position:
               312-642
               

               Cow position:
               chr10:19511206-19511541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               23, 183
               

               Conread position:
               312-684
               

               Cow position:
               chr10:10581275-10581654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               262
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               75, 9
               

               Conread position:
               313-517
               

               Cow position:
               chr10:183144-183353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               321-563
               

               Cow position:
               chr10:21466865-21467112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               321-666
               

               Cow position:
               chr10:21382323-21382679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               43, 208
               

               Conread position:
               321-683
               

               Cow position:
               chr10:20396399-20396749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               66, 159
               

               Conread position:
               321-684
               

               Cow position:
               chr10:47906392-47906759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               65, 104
               

               Conread position:
               321-684
               

               Cow position:
               chr10:54059736-54059373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               321-727
               

               Cow position:
               chr10:24299237-24298822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               61, 38
               

               Conread position:
               321-750
               

               Cow position:
               chr10:32063766-32064207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               321-752
               

               Cow position:
               chr10:60489281-60489717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               58, 85
               

               Conread position:
               321-756
               

               Cow position:
               chr10:4499327-4499750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               307
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               58, 160
               

               Conread position:
               322-751
               

               Cow position:
               chr10:41352142-41351697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               316
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               57, 189
               

               Conread position:
               323-666
               

               Cow position:
               chr10:54967520-54967183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               71, 21
               

               Conread position:
               323-684
               

               Cow position:
               chr10:21741136-21740770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               64, 250
               

               Conread position:
               323-728
               

               Cow position:
               chr10:14859597-14860009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               278
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               56, 7
               

               Conread position:
               324-578
               

               Cow position:
               chr10:58377947-58377700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               72, 49
               

               Conread position:
               324-582
               

               Cow position:
               chr10:14886228-14885975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               113, 50
               

               Conread position:
               324-756
               

               Cow position:
               chr10:42109347-42109788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 70
               

               Conread position:
               324-756
               

               Cow position:
               chr10:42747716-42748158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 175
               

               Conread position:
               326-679
               

               Cow position:
               chr10:58596126-58596475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 47
               

               Conread position:
               328-756
               

               Cow position:
               chr10:38846995-38847425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 10
               

               Conread position:
               330-730
               

               Cow position:
               chr10:21486535-21486949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               279
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               56, 163
               

               Conread position:
               331-685
               

               Cow position:
               chr10:55092731-55093093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               344-567
               

               Cow position:
               chr10:15862657-15862437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               38, 51
               

               Conread position:
               346-583
               

               Cow position:
               chr10:29695882-29696118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 112
               

               Conread position:
               346-666
               

               Cow position:
               chr10:25497990-25498313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               31, 226
               

               Conread position:
               346-733
               

               Cow position:
               chr10:34685535-34685933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               110, 13
               

               Conread position:
               346-733
               

               Cow position:
               chr10:62216242-62216645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               31, 145
               

               Conread position:
               352-728
               

               Cow position:
               chr10:29633206-29632829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               25, 52
               

               Conread position:
               358-641
               

               Cow position:
               chr10:25359050-25359334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               21, 54
               

               Conread position:
               361-673
               

               Cow position:
               chr10:38546567-38546254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               91, 42
               

               Conread position:
               364-733
               

               Cow position:
               chr10:62777995-62778385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               12, 130
               

               Conread position:
               365-756
               

               Cow position:
               chr10:10478476-10478087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               12, 88
               

               Conread position:
               366-728
               

               Cow position:
               chr10:24314163-24313798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               24, 46
               

               Conread position:
               369-640
               

               Cow position:
               chr10:49310200-49310469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               74, 38
               

               Conread position:
               380-684
               

               Cow position:
               chr10:61297005-61297308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               76, 28
               

               Conread position:
               382-756
               

               Cow position:
               chr10:21076036-21076430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 204
               

               Conread position:
               385-751
               

               Cow position:
               chr10:24978459-24978073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 181
               

               Conread position:
               433-704
               

               Cow position:
               chr10:64303253-64302963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               23, 124
               

               Conread position:
               491-722
               

               Cow position:
               chr10:20383759-20383517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 73
               

               Conread position:
               517-667
               

               Cow position:
               chr10:6260954-6260802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               1-111
               

               Cow position:
               chr11:8293498-8293608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               32, 92
               

               Conread position:
               1-123
               

               Cow position:
               chr11:87171580-87171704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-128
               

               Cow position:
               chr11:48084473-48084602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-129
               

               Cow position:
               chr11:17925427-17925301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               18-129
               

               Cow position:
               chr11:24242597-24242710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               274-634
               

               Cow position:
               chr11:35228797-35228456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               289-554
               

               Cow position:
               chr11:53432555-53432283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               13, 257
               

               Conread position:
               289-641
               

               Cow position:
               chr11:71328860-71329218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               13, 27
               

               Conread position:
               289-642
               

               Cow position:
               chr11:23876518-23876879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-642
               

               Cow position:
               chr11:24392541-24392899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               47, 205
               

               Conread position:
               289-642
               

               Cow position:
               chr11:72110745-72110387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               13, 199
               

               Conread position:
               289-684
               

               Cow position:
               chr11:43515419-43515011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               13, 203
               

               Conread position:
               289-684
               

               Cow position:
               chr11:67449709-67450117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               270
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               13, 172
               

               Conread position:
               289-703
               

               Cow position:
               chr11:85394595-85394167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-730
               

               Cow position:
               chr11:37093848-37093388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               308
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-730
               

               Cow position:
               chr11:41171472-41171019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               13, 88
               

               Conread position:
               289-752
               

               Cow position:
               chr11:11987333-11987808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 314
               

               Conread position:
               289-752
               

               Cow position:
               chr11:12359205-12358724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               323
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               13, 136
               

               Conread position:
               291-571
               

               Cow position:
               chr11:12092975-12093264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               36, 206
               

               Conread position:
               291-728
               

               Cow position:
               chr11:44496366-44495926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               53, 170
               

               Conread position:
               296-571
               

               Cow position:
               chr11:9220788-9220508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               84, 40
               

               Conread position:
               296-572
               

               Cow position:
               chr11:76375243-76374966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               84, 48
               

               Conread position:
               296-677
               

               Cow position:
               chr11:3492236-3492623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 199
               

               Conread position:
               296-684
               

               Cow position:
               chr11:20921525-20921126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 319
               

               Conread position:
               296-684
               

               Cow position:
               chr11:32450089-32450487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               26, 318
               

               Conread position:
               296-684
               

               Cow position:
               chr11:52418614-52419007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               27, 175
               

               Conread position:
               296-730
               

               Cow position:
               chr11:4041841-4041398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               20, 181
               

               Conread position:
               298-578
               

               Cow position:
               chr11:24242671-24242953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               301-684
               

               Cow position:
               chr11:29669398-29669009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               54, 35
               

               Conread position:
               301-712
               

               Cow position:
               chr11:26125701-26125281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               288
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               301-728
               

               Cow position:
               chr11:28062921-28063355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 37
               

               Conread position:
               301-732
               

               Cow position:
               chr11:33044886-33044445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               308
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               33, 47
               

               Conread position:
               305-756
               

               Cow position:
               chr11:42428568-42429040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               309-756
               

               Cow position:
               chr11:10218318-10217861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 49
               

               Conread position:
               317-728
               

               Cow position:
               chr11:28050512-28050118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               290
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               70, 21
               

               Conread position:
               321-642
               

               Cow position:
               chr11:58133606-58133943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               67, 186
               

               Conread position:
               321-666
               

               Cow position:
               chr11:30186352-30186691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               321-684
               

               Cow position:
               chr11:28230494-28230129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               65, 138
               

               Conread position:
               321-684
               

               Cow position:
               chr11:36744929-36744561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               65, 252
               

               Conread position:
               321-684
               

               Cow position:
               chr11:37477867-37477500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               65, 27
               

               Conread position:
               321-684
               

               Cow position:
               chr11:67847317-67846949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               251
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               66, 15
               

               Conread position:
               321-685
               

               Cow position:
               chr11:53288193-53287835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               65, 108
               

               Conread position:
               321-712
               

               Cow position:
               chr11:19103238-19102835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               66, 172
               

               Conread position:
               321-728
               

               Cow position:
               chr11:7687163-7687589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 29
               

               Conread position:
               321-728
               

               Cow position:
               chr11:44895743-44895350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               285
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               215, 53
               

               Conread position:
               321-730
               

               Cow position:
               chr11:54208875-54209292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               54, 171
               

               Conread position:
               322-642
               

               Cow position:
               chr11:10846693-10847018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               14, 278
               

               Conread position:
               323-590
               

               Cow position:
               chr11:17925313-17925045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 93
               

               Conread position:
               323-732
               

               Cow position:
               chr11:49076409-49076013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               328-666
               

               Cow position:
               chr11:8262437-8262100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               52, 13
               

               Conread position:
               329-527
               

               Cow position:
               chr11:81853333-81853130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               51, 127
               

               Conread position:
               330-493
               

               Cow position:
               chr11:72005301-72005464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               52, 75
               

               Conread position:
               330-586
               

               Cow position:
               chr11:52462353-52462614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               331-572
               

               Cow position:
               chr11:44507432-44507672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               49, 10
               

               Conread position:
               331-684
               

               Cow position:
               chr11:57628789-57628427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               332-663
               

               Cow position:
               chr11:28662089-28662421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 215
               

               Conread position:
               337-728
               

               Cow position:
               chr11:29234377-29233982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 151
               

               Conread position:
               338-730
               

               Cow position:
               chr11:28055329-28054926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               49, 155
               

               Conread position:
               345-756
               

               Cow position:
               chr11:43731698-43732111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 143
               

               Conread position:
               346-727
               

               Cow position:
               chr11:21466362-21466747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               187, 15
               

               Conread position:
               346-728
               

               Cow position:
               chr11:8887877-8887481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 155
               

               Conread position:
               346-733
               

               Cow position:
               chr11:30304537-30304914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               265
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               7, 115
               

               Conread position:
               346-733
               

               Cow position:
               chr11:34020182-34020578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               31, 146
               

               Conread position:
               350-728
               

               Cow position:
               chr11:15998169-15998566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               266
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               29, 262
               

               Conread position:
               350-728
               

               Cow position:
               chr11:32071389-32071781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 196
               

               Conread position:
               351-628
               

               Cow position:
               chr11:33195334-33195059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 116
               

               Conread position:
               351-666
               

               Cow position:
               chr11:40777453-40777131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               23, 60
               

               Conread position:
               351-684
               

               Cow position:
               chr11:19064972-19064630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               35, 249
               

               Conread position:
               353-542
               

               Cow position:
               chr11:48084610-48084799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               103, 21
               

               Conread position:
               353-712
               

               Cow position:
               chr11:44157953-44157584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               255
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               22, 139
               

               Conread position:
               356-604
               

               Cow position:
               chr11:66725791-66726034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               19, 56
               

               Conread position:
               356-728
               

               Cow position:
               chr11:31414951-31414568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 5
               

               Conread position:
               357-641
               

               Cow position:
               chr11:30125950-30125674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               25, 88
               

               Conread position:
               364-728
               

               Cow position:
               chr11:25526868-25527244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               13, 198
               

               Conread position:
               364-733
               

               Cow position:
               chr11:9660103-9659723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               19, 128
               

               Conread position:
               369-727
               

               Cow position:
               chr11:8895957-8896309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               167, 11
               

               Conread position:
               375-728
               

               Cow position:
               chr11:44861223-44860858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               253
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               67, 118
               

               Conread position:
               381-756
               

               Cow position:
               chr11:17220895-17220516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               154, 75
               

               Conread position:
               432-733
               

               Cow position:
               chr11:12351702-12351393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 154
               

               Conread position:
               523-756
               

               Cow position:
               chr11:39833208-39833451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               13, 42
               

               Conread position:
               607-756
               

               Cow position:
               chr11:24243012-24243164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               286-728
               

               Cow position:
               chr12:1401991-1402449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               16, 208
               

               Conread position:
               289-642
               

               Cow position:
               chr12:6407141-6406785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               13, 135
               

               Conread position:
               289-642
               

               Cow position:
               chr12:11097742-11098102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-728
               

               Cow position:
               chr12:1867973-1868419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               304
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               296-480
               

               Cow position:
               chr12:21311222-21311034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               296-675
               

               Cow position:
               chr12:43031866-43031486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               26, 119
               

               Conread position:
               296-684
               

               Cow position:
               chr12:3360421-3360810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               26, 242
               

               Conread position:
               296-684
               

               Cow position:
               chr12:26141321-26141720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               26, 175
               

               Conread position:
               296-730
               

               Cow position:
               chr12:21255141-21254695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               27, 87
               

               Conread position:
               296-756
               

               Cow position:
               chr12:21207205-21207687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               6, 20
               

               Conread position:
               300-642
               

               Cow position:
               chr12:27933426-27933085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               87, 29
               

               Conread position:
               300-728
               

               Cow position:
               chr12:15951739-15951306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               292
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               300-741
               

               Cow position:
               chr12:2308-2770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               310
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               32, 240
               

               Conread position:
               301-651
               

               Cow position:
               chr12:42860301-42859946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 193
               

               Conread position:
               306-728
               

               Cow position:
               chr12:1137115-1137542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               308-684
               

               Cow position:
               chr12:34855639-34855263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               72, 8
               

               Conread position:
               321-634
               

               Cow position:
               chr12:2840050-2839741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               58, 118
               

               Conread position:
               321-642
               

               Cow position:
               chr12:25101529-25101201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               53, 228
               

               Conread position:
               322-756
               

               Cow position:
               chr12:22255313-22255729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 71
               

               Conread position:
               323-730
               

               Cow position:
               chr12:21499659-21500078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               296
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               55, 15
               

               Conread position:
               324-642
               

               Cow position:
               chr12:20998585-20998259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               330-728
               

               Cow position:
               chr12:22332164-22332578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               275
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               53, 16
               

               Conread position:
               333-628
               

               Cow position:
               chr12:2282092-2282393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               7, 113
               

               Conread position:
               344-631
               

               Cow position:
               chr12:3630749-3631028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 141
               

               Conread position:
               345-642
               

               Cow position:
               chr12:21941338-21941636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               35, 123
               

               Conread position:
               346-567
               

               Cow position:
               chr12:26947707-26947469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               31, 210
               

               Conread position:
               364-708
               

               Cow position:
               chr12:8310762-8311121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               364-728
               

               Cow position:
               chr12:21901531-21901898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               13, 89
               

               Conread position:
               374-703
               

               Cow position:
               chr12:14663020-14662681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               91, 225
               

               Conread position:
               424-756
               

               Cow position:
               chr12:8982760-8982427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               221, 87
               

               Conread position:
               1-124
               

               Cow position:
               chr13:30140185-30140310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               35, 73
               

               Conread position:
               289-599
               

               Cow position:
               chr13:15542746-15543063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 179
               

               Conread position:
               289-642
               

               Cow position:
               chr13:1593875-1593514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               13, 205
               

               Conread position:
               289-642
               

               Cow position:
               chr13:30302352-30302706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               246
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               13, 249
               

               Conread position:
               289-642
               

               Cow position:
               chr13:32738528-32738181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               13, 144
               

               Conread position:
               289-712
               

               Cow position:
               chr13:4940366-4940804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-712
               

               Cow position:
               chr13:35756515-35756958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               294
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               13, 64
               

               Conread position:
               289-730
               

               Cow position:
               chr13:15521234-15520776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               306
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               13, 180
               

               Conread position:
               289-730
               

               Cow position:
               chr13:15925103-15924645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               296-564
               

               Cow position:
               chr13:53834059-53834334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               296-581
               

               Cow position:
               chr13:2389509-2389214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               296-675
               

               Cow position:
               chr13:50108754-50109138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               26, 279
               

               Conread position:
               296-684
               

               Cow position:
               chr13:21840909-21840509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               26, 320
               

               Conread position:
               296-684
               

               Cow position:
               chr13:31734785-31734395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               263
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               26, 165
               

               Conread position:
               296-684
               

               Cow position:
               chr13:32986757-32986364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               26, 112
               

               Conread position:
               296-730
               

               Cow position:
               chr13:34326375-34325936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               306
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               7, 96
               

               Conread position:
               298-506
               

               Cow position:
               chr13:47859615-47859821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               75, 183
               

               Conread position:
               298-751
               

               Cow position:
               chr13:46733055-46732592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 187
               

               Conread position:
               301-663
               

               Cow position:
               chr13:32525438-32525082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               33, 60
               

               Conread position:
               301-665
               

               Cow position:
               chr13:3655013-3654646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               35, 185
               

               Conread position:
               301-684
               

               Cow position:
               chr13:31613042-31612650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               301-756
               

               Cow position:
               chr13:33337029-33336571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               307
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               35, 51
               

               Conread position:
               305-642
               

               Cow position:
               chr13:58261416-58261752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               90, 22
               

               Conread position:
               305-728
               

               Cow position:
               chr13:2305808-2306240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               97, 11
               

               Conread position:
               305-756
               

               Cow position:
               chr13:31560492-31560959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 10
               

               Conread position:
               312-632
               

               Cow position:
               chr13:48356640-48356952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 16
               

               Conread position:
               320-707
               

               Cow position:
               chr13:6668811-6668410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 224
               

               Conread position:
               320-750
               

               Cow position:
               chr13:15080856-15080448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               59, 122
               

               Conread position:
               321-675
               

               Cow position:
               chr13:30245420-30245057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               65, 171
               

               Conread position:
               321-730
               

               Cow position:
               chr13:17307799-17308214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               26, 31
               

               Conread position:
               321-756
               

               Cow position:
               chr13:22186402-22185963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               51, 168
               

               Conread position:
               321-756
               

               Cow position:
               chr13:34043049-34042597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               66, 110
               

               Conread position:
               332-666
               

               Cow position:
               chr13:2297471-2297133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               47, 187
               

               Conread position:
               334-751
               

               Cow position:
               chr13:30140321-30140759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 96
               

               Conread position:
               345-756
               

               Cow position:
               chr13:54283933-54284349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               34, 77
               

               Conread position:
               346-728
               

               Cow position:
               chr13:33825398-33824992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               281
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               31, 207
               

               Conread position:
               346-733
               

               Cow position:
               chr13:3276498-3276900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               276
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 140
               

               Conread position:
               346-733
               

               Cow position:
               chr13:31831950-31832342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               346-733
               

               Cow position:
               chr13:62328240-62327842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               346-756
               

               Cow position:
               chr13:30657622-30657203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               31, 147
               

               Conread position:
               351-622
               

               Cow position:
               chr13:34868116-34868388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               32, 134
               

               Conread position:
               351-728
               

               Cow position:
               chr13:34912020-34911639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               352-728
               

               Cow position:
               chr13:34187337-34186950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               100, 21
               

               Conread position:
               352-733
               

               Cow position:
               chr13:34692515-34692905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               268
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               352-756
               

               Cow position:
               chr13:33928202-33927797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               287
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               15, 44
               

               Conread position:
               353-592
               

               Cow position:
               chr13:32544294-32544538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               356-684
               

               Cow position:
               chr13:4481825-4482156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               31, 137
               

               Conread position:
               364-685
               

               Cow position:
               chr13:34143302-34142971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               13, 182
               

               Conread position:
               364-741
               

               Cow position:
               chr13:2909087-2908700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               13, 214
               

               Conread position:
               378-666
               

               Cow position:
               chr13:3058620-3058327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 233
               

               Conread position:
               413-756
               

               Cow position:
               chr13:9043919-9044272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               245
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               62, 47
               

               Conread position:
               414-728
               

               Cow position:
               chr13:60701857-60701547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               42, 83
               

               Conread position:
               414-745
               

               Cow position:
               chr13:3338257-3338594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               488-726
               

               Cow position:
               chr13:47859938-47860183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               52, 57
               

               Conread position:
               278-728
               

               Cow position:
               chr14:40170533-40170072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               289-642
               

               Cow position:
               chr14:17001891-17001539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               289-642
               

               Cow position:
               chr14:17684559-17684911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               289-642
               

               Cow position:
               chr14:20781615-20781972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               246
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               13, 197
               

               Conread position:
               289-684
               

               Cow position:
               chr14:45672887-45672483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               33, 186
               

               Conread position:
               289-703
               

               Cow position:
               chr14:7471532-7471960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               13, 326
               

               Conread position:
               289-712
               

               Cow position:
               chr14:16274141-16273702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 314
               

               Conread position:
               289-730
               

               Cow position:
               chr14:37223058-37223518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-730
               

               Cow position:
               chr14:50109736-50110187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               13, 127
               

               Conread position:
               289-752
               

               Cow position:
               chr14:11154997-11154523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               314
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               13, 257
               

               Conread position:
               296-544
               

               Cow position:
               chr14:17241404-17241653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               26, 166
               

               Conread position:
               296-675
               

               Cow position:
               chr14:749740-750122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               26, 44
               

               Conread position:
               296-684
               

               Cow position:
               chr14:17492288-17491895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               26, 58
               

               Conread position:
               301-493
               

               Cow position:
               chr14:46653754-46653951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               26, 131
               

               Conread position:
               301-646
               

               Cow position:
               chr14:48255143-48254791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 262
               

               Conread position:
               301-756
               

               Cow position:
               chr14:40338883-40339342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               312
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 166
               

               Conread position:
               303-756
               

               Cow position:
               chr14:43034685-43034245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 75
               

               Conread position:
               305-684
               

               Cow position:
               chr14:22032509-22032124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               31, 188
               

               Conread position:
               310-756
               

               Cow position:
               chr14:27993095-27992664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 17
               

               Conread position:
               316-756
               

               Cow position:
               chr14:14309872-14309429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               65, 5
               

               Conread position:
               319-666
               

               Cow position:
               chr14:45160054-45160406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               247
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               320-666
               

               Cow position:
               chr14:44685236-44685590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               321-580
               

               Cow position:
               chr14:44261896-44261638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               55, 23
               

               Conread position:
               321-642
               

               Cow position:
               chr14:19329076-19328753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               231
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               66, 171
               

               Conread position:
               321-642
               

               Cow position:
               chr14:28994666-28994339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               227
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               59, 173
               

               Conread position:
               321-684
               

               Cow position:
               chr14:13272453-13272820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               65, 171
               

               Conread position:
               322-728
               

               Cow position:
               chr14:43552612-43553034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 151
               

               Conread position:
               323-685
               

               Cow position:
               chr14:48150746-48150390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               64, 21
               

               Conread position:
               328-685
               

               Cow position:
               chr14:23256554-23256922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               58, 249
               

               Conread position:
               328-756
               

               Cow position:
               chr14:22018597-22019042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 132
               

               Conread position:
               328-756
               

               Cow position:
               chr14:47921220-47921647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 9
               

               Conread position:
               329-581
               

               Cow position:
               chr14:46669526-46669776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               53, 158
               

               Conread position:
               330-685
               

               Cow position:
               chr14:23529793-23529447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               49, 93
               

               Conread position:
               331-712
               

               Cow position:
               chr14:45079738-45080114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               331-756
               

               Cow position:
               chr14:33235204-33235634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 60
               

               Conread position:
               334-576
               

               Cow position:
               chr14:14422804-14422560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               49, 222
               

               Conread position:
               334-592
               

               Cow position:
               chr14:44551259-44551520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               340-562
               

               Cow position:
               chr14:2283197-2283424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               344-534
               

               Cow position:
               chr14:38145853-38146046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               345-728
               

               Cow position:
               chr14:11467814-11468203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               35, 57
               

               Conread position:
               346-565
               

               Cow position:
               chr14:1499969-1500193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               346-728
               

               Cow position:
               chr14:45767225-45767620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               39, 28
               

               Conread position:
               346-756
               

               Cow position:
               chr14:45712762-45712337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               288
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               31, 13
               

               Conread position:
               350-593
               

               Cow position:
               chr14:41085588-41085341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               350-750
               

               Cow position:
               chr14:23691007-23690590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               32, 414
               

               Conread position:
               351-684
               

               Cow position:
               chr14:9044785-9045127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               36, 262
               

               Conread position:
               352-660
               

               Cow position:
               chr14:47623792-47624105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               25, 106
               

               Conread position:
               353-642
               

               Cow position:
               chr14:29048672-29048385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               354-680
               

               Cow position:
               chr14:34774825-34775150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               356-572
               

               Cow position:
               chr14:30597150-30596923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 137
               

               Conread position:
               364-684
               

               Cow position:
               chr14:36967491-36967816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               15, 181
               

               Conread position:
               364-727
               

               Cow position:
               chr14:44130161-44130531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               13, 66
               

               Conread position:
               369-756
               

               Cow position:
               chr14:48406417-48406041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               15, 50
               

               Conread position:
               375-733
               

               Cow position:
               chr14:44856179-44855808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               81, 90
               

               Conread position:
               377-750
               

               Cow position:
               chr14:13326861-13326492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               79, 189
               

               Conread position:
               385-582
               

               Cow position:
               chr14:13778120-13778320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               412-752
               

               Cow position:
               chr14:16920399-16920047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               53, 187
               

               Conread position:
               418-733
               

               Cow position:
               chr14:44421847-44422174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               36, 65
               

               Conread position:
               546-756
               

               Cow position:
               chr14:38816777-38816558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               99, 26
               

               Conread position:
               2-129
               

               Cow position:
               chr15:17219770-17219644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               271-730
               

               Cow position:
               chr15:2648512-2648039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               289-570
               

               Cow position:
               chr15:4681383-4681668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               37, 134
               

               Conread position:
               289-642
               

               Cow position:
               chr15:525693-525333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               47, 15
               

               Conread position:
               289-642
               

               Cow position:
               chr15:51215750-51216111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               13, 207
               

               Conread position:
               289-684
               

               Cow position:
               chr15:42935875-42936277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 125
               

               Conread position:
               289-723
               

               Cow position:
               chr15:35754662-35754217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               47, 86
               

               Conread position:
               289-752
               

               Cow position:
               chr15:4384432-4384912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               296-642
               

               Cow position:
               chr15:17081015-17080671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               26, 170
               

               Conread position:
               296-666
               

               Cow position:
               chr15:1519982-1519606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               26, 283
               

               Conread position:
               296-675
               

               Cow position:
               chr15:11598947-11598560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               26, 246
               

               Conread position:
               296-684
               

               Cow position:
               chr15:18268810-18268424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               27, 112
               

               Conread position:
               296-684
               

               Cow position:
               chr15:22204949-22204550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               26, 319
               

               Conread position:
               296-684
               

               Cow position:
               chr15:22920299-22920688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               26, 118
               

               Conread position:
               296-703
               

               Cow position:
               chr15:689983-690379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               282
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               26, 112
               

               Conread position:
               296-730
               

               Cow position:
               chr15:55373-55818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               292
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               27, 126
               

               Conread position:
               296-739
               

               Cow position:
               chr15:50144663-50145128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               310
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               26, 313
               

               Conread position:
               296-744
               

               Cow position:
               chr15:21878189-21877734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               292
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               26, 279
               

               Conread position:
               296-756
               

               Cow position:
               chr15:20748577-20749064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               26, 322
               

               Conread position:
               298-644
               

               Cow position:
               chr15:24294256-24294610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               298-684
               

               Cow position:
               chr15:36970091-36970487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               11, 69
               

               Conread position:
               299-751
               

               Cow position:
               chr15:7789170-7788725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 49
               

               Conread position:
               301-665
               

               Cow position:
               chr15:32709718-32710087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               21, 162
               

               Conread position:
               301-730
               

               Cow position:
               chr15:6554682-6554237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               301-730
               

               Cow position:
               chr15:37391678-37392118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               299
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               21, 274
               

               Conread position:
               301-756
               

               Cow position:
               chr15:31358074-31358538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               309
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 223
               

               Conread position:
               305-641
               

               Cow position:
               chr15:18333652-18333311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               238
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               22, 42
               

               Conread position:
               305-642
               

               Cow position:
               chr15:4649018-4649354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               307-752
               

               Cow position:
               chr15:4630735-4630271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               316
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               73, 21
               

               Conread position:
               308-620
               

               Cow position:
               chr15:17291635-17291951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               308-727
               

               Cow position:
               chr15:32680360-32679935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               287
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               86, 20
               

               Conread position:
               310-655
               

               Cow position:
               chr15:14577318-14576972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 62
               

               Conread position:
               310-733
               

               Cow position:
               chr15:51799929-51800354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               286
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               69, 18
               

               Conread position:
               312-584
               

               Cow position:
               chr15:38957842-38957562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               75, 16
               

               Conread position:
               314-642
               

               Cow position:
               chr15:32722988-32722667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               12, 111
               

               Conread position:
               316-749
               

               Cow position:
               chr15:5955274-5954847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               9, 30
               

               Conread position:
               319-684
               

               Cow position:
               chr15:2006733-2007103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 55
               

               Conread position:
               320-703
               

               Cow position:
               chr15:10887801-10888197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               320-728
               

               Cow position:
               chr15:35734655-35735070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               321-568
               

               Cow position:
               chr15:6456481-6456732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               61, 223
               

               Conread position:
               321-619
               

               Cow position:
               chr15:317138-316835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               66, 172
               

               Conread position:
               321-621
               

               Cow position:
               chr15:6156767-6156472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               178, 136
               

               Conread position:
               321-632
               

               Cow position:
               chr15:15347929-15347613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               66, 172
               

               Conread position:
               321-642
               

               Cow position:
               chr15:7186845-7186521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               65, 190
               

               Conread position:
               321-675
               

               Cow position:
               chr15:1771693-1772053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 253
               

               Conread position:
               321-684
               

               Cow position:
               chr15:7933172-7933532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               58, 91
               

               Conread position:
               321-703
               

               Cow position:
               chr15:2011282-2011670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               65, 139
               

               Conread position:
               321-730
               

               Cow position:
               chr15:50124743-50124322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               284
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               58, 169
               

               Conread position:
               321-756
               

               Cow position:
               chr15:21816549-21816097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 137
               

               Conread position:
               322-730
               

               Cow position:
               chr15:7233511-7233929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               65, 140
               

               Conread position:
               322-756
               

               Cow position:
               chr15:6326960-6326540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               213, 69
               

               Conread position:
               322-756
               

               Cow position:
               chr15:17219665-17219225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 52
               

               Conread position:
               323-742
               

               Cow position:
               chr15:1662593-1663012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               131, 17
               

               Conread position:
               323-750
               

               Cow position:
               chr15:17787949-17787521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               324-520
               

               Cow position:
               chr15:7541172-7541371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               55, 17
               

               Conread position:
               324-756
               

               Cow position:
               chr15:12614264-12614717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 144
               

               Conread position:
               325-684
               

               Cow position:
               chr15:17040054-17039689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               11, 63
               

               Conread position:
               328-664
               

               Cow position:
               chr15:8098684-8099029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               59, 163
               

               Conread position:
               328-666
               

               Cow position:
               chr15:42321217-42320873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               58, 249
               

               Conread position:
               328-684
               

               Cow position:
               chr15:1781461-1781817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               236
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               58, 121
               

               Conread position:
               328-744
               

               Cow position:
               chr15:443813-444232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               62, 132
               

               Conread position:
               328-751
               

               Cow position:
               chr15:11624117-11624554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 91
               

               Conread position:
               329-756
               

               Cow position:
               chr15:490956-490512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               298
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               50, 127
               

               Conread position:
               330-703
               

               Cow position:
               chr15:4764415-4764792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               57, 162
               

               Conread position:
               330-712
               

               Cow position:
               chr15:42490406-42490800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               52, 214
               

               Conread position:
               331-728
               

               Cow position:
               chr15:7927836-7928237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               286
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               331-742
               

               Cow position:
               chr15:2677095-2676667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               331-755
               

               Cow position:
               chr15:685366-685812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 304
               

               Conread position:
               334-583
               

               Cow position:
               chr15:6387088-6386835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               55, 11
               

               Conread position:
               334-619
               

               Cow position:
               chr15:2923721-2924010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               342-750
               

               Cow position:
               chr15:8407783-8408195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               282
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               9, 76
               

               Conread position:
               344-728
               

               Cow position:
               chr15:18023561-18023169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               43, 158
               

               Conread position:
               345-685
               

               Cow position:
               chr15:24793271-24793613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               35, 200
               

               Conread position:
               345-728
               

               Cow position:
               chr15:45886027-45886407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               34, 92
               

               Conread position:
               346-659
               

               Cow position:
               chr15:17272162-17271841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 229
               

               Conread position:
               346-666
               

               Cow position:
               chr15:8001031-8000701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               31, 203
               

               Conread position:
               346-728
               

               Cow position:
               chr15:6278035-6277642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               346-728
               

               Cow position:
               chr15:21960729-21961122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               262
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               31, 198
               

               Conread position:
               346-728
               

               Cow position:
               chr15:41365397-41365795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               266
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               7, 149
               

               Conread position:
               346-733
               

               Cow position:
               chr15:6371622-6371230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 197
               

               Conread position:
               350-733
               

               Cow position:
               chr15:35747514-35747918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               27, 110
               

               Conread position:
               351-531
               

               Cow position:
               chr15:4143537-4143355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               36, 119
               

               Conread position:
               351-666
               

               Cow position:
               chr15:7544102-7544423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               36, 192
               

               Conread position:
               351-728
               

               Cow position:
               chr15:10479470-10479088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               28, 87
               

               Conread position:
               351-728
               

               Cow position:
               chr15:49676264-49676636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               35, 54
               

               Conread position:
               351-733
               

               Cow position:
               chr15:327635-328026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               29, 61
               

               Conread position:
               353-712
               

               Cow position:
               chr15:44069016-44069388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               34, 140
               

               Conread position:
               356-684
               

               Cow position:
               chr15:19738825-19738490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               30, 136
               

               Conread position:
               356-730
               

               Cow position:
               chr15:18575947-18576337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               261
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               28, 191
               

               Conread position:
               359-584
               

               Cow position:
               chr15:2902920-2902690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               28, 185
               

               Conread position:
               359-728
               

               Cow position:
               chr15:35648977-35648605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               121, 28
               

               Conread position:
               363-741
               

               Cow position:
               chr15:6472662-6472282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               173, 23
               

               Conread position:
               364-531
               

               Cow position:
               chr15:6650812-6650642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               375-666
               

               Cow position:
               chr15:36648161-36648455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               75, 115
               

               Conread position:
               382-756
               

               Cow position:
               chr15:32286533-32286915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               202, 115
               

               Conread position:
               385-728
               

               Cow position:
               chr15:23157572-23157213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               71, 25
               

               Conread position:
               386-666
               

               Cow position:
               chr15:3038267-3037967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               68, 269
               

               Conread position:
               390-728
               

               Cow position:
               chr15:7894934-7894595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               66, 20
               

               Conread position:
               407-619
               

               Cow position:
               chr15:32671951-32672169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               45, 178
               

               Conread position:
               408-742
               

               Cow position:
               chr15:6621616-6621948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               44, 75
               

               Conread position:
               408-756
               

               Cow position:
               chr15:16506897-16507246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               46, 129
               

               Conread position:
               409-663
               

               Cow position:
               chr15:24715377-24715632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 87
               

               Conread position:
               413-733
               

               Cow position:
               chr15:4733149-4733482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               52, 119
               

               Conread position:
               444-756
               

               Cow position:
               chr15:1253631-1253953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 127
               

               Conread position:
               488-756
               

               Cow position:
               chr15:40104833-40105113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               497-756
               

               Cow position:
               chr15:15266283-15266007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               35, 256
               

               Conread position:
               1-129
               

               Cow position:
               chr16:51685181-51685308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               279-618
               

               Cow position:
               chr16:48626308-48626633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               31, 84
               

               Conread position:
               286-642
               

               Cow position:
               chr16:25340783-25341139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               246
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               286-684
               

               Cow position:
               chr16:7676887-7676482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               16, 163
               

               Conread position:
               289-641
               

               Cow position:
               chr16:29045842-29046191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               13, 157
               

               Conread position:
               289-703
               

               Cow position:
               chr16:25440427-25440857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               13, 28
               

               Conread position:
               289-703
               

               Cow position:
               chr16:25458663-25458232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               290
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               13, 32
               

               Conread position:
               289-712
               

               Cow position:
               chr16:8817294-8816857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               296
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               289-730
               

               Cow position:
               chr16:1568636-1568185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               13, 73
               

               Conread position:
               289-730
               

               Cow position:
               chr16:23253688-23253235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               302
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               13, 27
               

               Conread position:
               289-730
               

               Cow position:
               chr16:24881876-24881421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               13, 206
               

               Conread position:
               294-728
               

               Cow position:
               chr16:40887446-40886990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               296
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               90, 25
               

               Conread position:
               296-675
               

               Cow position:
               chr16:28171542-28171153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               26, 320
               

               Conread position:
               296-756
               

               Cow position:
               chr16:31581-32041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               26, 71
               

               Conread position:
               298-752
               

               Cow position:
               chr16:54647156-54647617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               301-642
               

               Cow position:
               chr16:10204591-10204243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               21, 193
               

               Conread position:
               301-642
               

               Cow position:
               chr16:12539097-12538754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               235
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               86, 35
               

               Conread position:
               301-642
               

               Cow position:
               chr16:28472272-28471925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               35, 193
               

               Conread position:
               301-756
               

               Cow position:
               chr16:5888328-5888779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               316
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               79, 20
               

               Conread position:
               303-644
               

               Cow position:
               chr16:32934981-32935308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               14, 28
               

               Conread position:
               303-730
               

               Cow position:
               chr16:31593081-31592635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 191
               

               Conread position:
               305-637
               

               Cow position:
               chr16:26518165-26517842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               27, 41
               

               Conread position:
               308-752
               

               Cow position:
               chr16:40297344-40296881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               12, 194
               

               Conread position:
               311-583
               

               Cow position:
               chr16:42740577-42740310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               68, 34
               

               Conread position:
               315-730
               

               Cow position:
               chr16:1430064-1430493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               8, 180
               

               Conread position:
               316-756
               

               Cow position:
               chr16:9457374-9457807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               301
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               25, 29
               

               Conread position:
               317-728
               

               Cow position:
               chr16:55112003-55111580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               293
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               318-502
               

               Cow position:
               chr16:13017776-13017957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               12, 24
               

               Conread position:
               319-684
               

               Cow position:
               chr16:5918326-5918701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               49, 295
               

               Conread position:
               320-520
               

               Cow position:
               chr16:5589044-5589247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               59, 169
               

               Conread position:
               321-582
               

               Cow position:
               chr16:21185126-21185392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               321-642
               

               Cow position:
               chr16:408187-407862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               65, 171
               

               Conread position:
               321-642
               

               Cow position:
               chr16:2728468-2728144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               66, 172
               

               Conread position:
               321-642
               

               Cow position:
               chr16:43898423-43898098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               66, 122
               

               Conread position:
               321-684
               

               Cow position:
               chr16:6942467-6942839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               65, 292
               

               Conread position:
               321-751
               

               Cow position:
               chr16:24155580-24155150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 36
               

               Conread position:
               321-756
               

               Cow position:
               chr16:51685293-51685739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 170
               

               Conread position:
               323-592
               

               Cow position:
               chr16:9929404-9929677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               63, 7
               

               Conread position:
               323-647
               

               Cow position:
               chr16:27004227-27004543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               71, 23
               

               Conread position:
               324-568
               

               Cow position:
               chr16:42051490-42051258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 21
               

               Conread position:
               324-660
               

               Cow position:
               chr16:16687719-16688062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               24, 74
               

               Conread position:
               324-684
               

               Cow position:
               chr16:32605675-32606044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               62, 289
               

               Conread position:
               324-728
               

               Cow position:
               chr16:44964898-44965320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               288
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               45, 128
               

               Conread position:
               324-750
               

               Cow position:
               chr16:28438923-28438494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               31, 24
               

               Conread position:
               324-756
               

               Cow position:
               chr16:14669142-14669593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               301
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 32
               

               Conread position:
               328-644
               

               Cow position:
               chr16:49236257-49235942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               225
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               330-644
               

               Cow position:
               chr16:18688264-18687947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               49, 95
               

               Conread position:
               333-756
               

               Cow position:
               chr16:41559543-41559960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               54, 11
               

               Conread position:
               344-727
               

               Cow position:
               chr16:7905511-7905911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 149
               

               Conread position:
               345-728
               

               Cow position:
               chr16:23670715-23670327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               28, 18
               

               Conread position:
               346-641
               

               Cow position:
               chr16:15565620-15565920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               29, 147
               

               Conread position:
               346-703
               

               Cow position:
               chr16:19713978-19713613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               31, 232
               

               Conread position:
               346-728
               

               Cow position:
               chr16:20255437-20255042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               265
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               31, 161
               

               Conread position:
               346-733
               

               Cow position:
               chr16:29676435-29676034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 121
               

               Conread position:
               346-751
               

               Cow position:
               chr16:11052043-11052451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               282
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               31, 112
               

               Conread position:
               350-638
               

               Cow position:
               chr16:14422590-14422882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               30, 95
               

               Conread position:
               351-641
               

               Cow position:
               chr16:29031794-29032085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               31, 60
               

               Conread position:
               351-684
               

               Cow position:
               chr16:49257696-49257368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               20, 188
               

               Conread position:
               351-756
               

               Cow position:
               chr16:5660742-5661155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               35, 108
               

               Conread position:
               353-642
               

               Cow position:
               chr16:9777008-9777302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               34, 140
               

               Conread position:
               353-712
               

               Cow position:
               chr16:10437134-10437490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 140
               

               Conread position:
               353-756
               

               Cow position:
               chr16:26662632-26663050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               125, 107
               

               Conread position:
               356-730
               

               Cow position:
               chr16:15491593-15491978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               31, 50
               

               Conread position:
               359-684
               

               Cow position:
               chr16:25157333-25157004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               21, 52
               

               Conread position:
               364-756
               

               Cow position:
               chr16:6549633-6549223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               283
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               12, 128
               

               Conread position:
               381-684
               

               Cow position:
               chr16:23982218-23982528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               84, 110
               

               Conread position:
               385-712
               

               Cow position:
               chr16:27734894-27734556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               80, 106
               

               Conread position:
               409-664
               

               Cow position:
               chr16:25293530-25293796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               47, 137
               

               Conread position:
               409-728
               

               Cow position:
               chr16:55080417-55080090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               47, 77
               

               Conread position:
               463-642
               

               Cow position:
               chr16:2411980-2411799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 78
               

               Conread position:
               475-756
               

               Cow position:
               chr16:52815623-52815339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               519-756
               

               Cow position:
               chr16:13017950-13018209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               538-728
               

               Cow position:
               chr16:41758396-41758210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               99, 28
               

               Conread position:
               289-584
               

               Cow position:
               chr17:6259095-6259391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               289-642
               

               Cow position:
               chr17:18104293-18103933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               20, 206
               

               Conread position:
               289-712
               

               Cow position:
               chr17:16860181-16859731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               289
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               43, 447
               

               Conread position:
               289-756
               

               Cow position:
               chr17:13929062-13929547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               326
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               295-756
               

               Cow position:
               chr17:6002615-6002135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               320
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               15, 67
               

               Conread position:
               296-549
               

               Cow position:
               chr17:6119545-6119805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               26, 198
               

               Conread position:
               296-684
               

               Cow position:
               chr17:1383417-1383021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               268
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               6, 20
               

               Conread position:
               296-684
               

               Cow position:
               chr17:9654055-9653663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               264
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               26, 276
               

               Conread position:
               296-684
               

               Cow position:
               chr17:11782765-11783164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               26, 319
               

               Conread position:
               296-684
               

               Cow position:
               chr17:14217631-14217231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               6, 199
               

               Conread position:
               296-684
               

               Cow position:
               chr17:22160310-22160709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               263
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               26, 319
               

               Conread position:
               301-752
               

               Cow position:
               chr17:15322231-15322684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 159
               

               Conread position:
               301-752
               

               Cow position:
               chr17:40803793-40804268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               35, 198
               

               Conread position:
               303-756
               

               Cow position:
               chr17:16889532-16889998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               311
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               305-531
               

               Cow position:
               chr17:31423702-31423915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               305-666
               

               Cow position:
               chr17:249332-249688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 188
               

               Conread position:
               308-730
               

               Cow position:
               chr17:11088313-11087877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               58, 185
               

               Conread position:
               321-520
               

               Cow position:
               chr17:3710776-3710582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               55, 164
               

               Conread position:
               321-567
               

               Cow position:
               chr17:4294818-4295050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               217, 62
               

               Conread position:
               321-642
               

               Cow position:
               chr17:3643414-3643089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               52, 104
               

               Conread position:
               321-666
               

               Cow position:
               chr17:8208531-8208880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               59, 253
               

               Conread position:
               321-675
               

               Cow position:
               chr17:2261538-2261894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               65, 138
               

               Conread position:
               321-684
               

               Cow position:
               chr17:24633378-24633747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               65, 148
               

               Conread position:
               321-684
               

               Cow position:
               chr17:24780473-24780841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               254
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               65, 27
               

               Conread position:
               321-752
               

               Cow position:
               chr17:153030-152607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               84, 30
               

               Conread position:
               321-756
               

               Cow position:
               chr17:228874-228424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               295
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               63, 113
               

               Conread position:
               321-756
               

               Cow position:
               chr17:4081072-4081520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               300
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               58, 259
               

               Conread position:
               323-684
               

               Cow position:
               chr17:15435217-15435584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               15, 136
               

               Conread position:
               325-674
               

               Cow position:
               chr17:15157527-15157180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               61, 134
               

               Conread position:
               328-673
               

               Cow position:
               chr17:20401105-20401463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               52, 10
               

               Conread position:
               329-556
               

               Cow position:
               chr17:12670906-12670677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 149
               

               Conread position:
               330-712
               

               Cow position:
               chr17:25737094-25737488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               50, 163
               

               Conread position:
               333-666
               

               Cow position:
               chr17:2249148-2248808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               49, 267
               
333-666UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr17:20666293-20665953 (view  custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               53, 280
               
333-733UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:35591660-35592065 (view  custom track)

               
               
               
Alignm length: 419

               
               
               
Alignm identity: 273

               
               
               
Alignm E-value: 2e-27

               
               
               
Alignm gaps (pig, cow): 20, 47
344-570UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:19609455-19609221 (view  custom track)

               
               
               
Alignm length: 235

               
               
               
Alignm identity: 171

               
               
               
Alignm E-value: 1e-34

               
               
               
Alignm gaps (pig, cow): 30, 0

               
               
               Conread position:346-567
               
               
               Cow position:chr17:55234-55010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:346-600
               
               
               Cow position:chr17:32024747-32024491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):106, 222

               
               
               Conread position:346-666
               
               
               Cow position:chr17:22430030-22429709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:346-728
               
               
               Cow position:chr17:27345258-27345650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:346-756
               
               
               Cow position:chr17:1284310-1283903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:346-756
               
               
               Cow position:chr17:14326051-14325622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:353-728
               
               
               Cow position:chr17:15370535-15370921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:354-751
               
               
               Cow position:chr17:23857594-23857168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 246

               
               
               Conread position:356-676
               
               
               Cow position:chr17:28109557-28109869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):172, 5

               
               
               Conread position:357-703
               
               
               Cow position:chr17:19269903-19269549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:364-581
               
               
               Cow position:chr17:20088283-20088067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:409-751
               
               
               Cow position:chr17:15381518-15381859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 103

               
               
               Conread position:413-732
               
               
               Cow position:chr17:13894015-13893687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):230, 127

               
               
               Conread position:423-730
               
               
               Cow position:chr17:6089636-6089314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:424-660
               
               
               Cow position:chr17:2737905-2738145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:488-728
               
               
               Cow position:chr17:20183634-20183384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:289-534
               
               
               Cow position:chr18:42244950-42244709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:289-581
               
               
               Cow position:chr18:14129890-14130188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:289-642
               
               
               Cow position:chr18:28974302-28973948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-642
               
               
               Cow position:chr18:51480435-51480792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 180

               
               
               Conread position:289-684
               
               
               Cow position:chr18:41841230-41840824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-712
               
               
               Cow position:chr18:23797246-23797680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 215

               
               
               Conread position:289-712
               
               
               Cow position:chr18:37504661-37505096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:289-728
               
               
               Cow position:chr18:33335469-33335920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:289-752
               
               
               Cow position:chr18:27838702-27838232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:296-684
               
               
               Cow position:chr18:37586061-37585663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-684
               
               
               Cow position:chr18:44621360-44621760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 320

               
               
               Conread position:296-730
               
               
               Cow position:chr18:47741620-47742073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-756
               
               
               Cow position:chr18:19351980-19352472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:316
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):6, 327

               
               
               Conread position:298-642
               
               
               Cow position:chr18:40193221-40193572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 199

               
               
               Conread position:301-642
               
               
               Cow position:chr18:25349648-25349994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:301-712
               
               
               Cow position:chr18:36507941-36508366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 303

               
               
               Conread position:313-684
               
               
               Cow position:chr18:54172222-54171844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):60, 105

               
               
               Conread position:315-756
               
               
               Cow position:chr18:29945847-29946265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:316-642
               
               
               Cow position:chr18:14415603-14415931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):71, 176

               
               
               Conread position:319-666
               
               
               Cow position:chr18:16660368-16660024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):146, 12

               
               
               Conread position:321-666
               
               
               Cow position:chr18:55089296-55088944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 223

               
               
               Conread position:321-756
               
               
               Cow position:chr18:9187132-9186680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:322-666
               
               
               Cow position:chr18:35335117-35335470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:328-571
               
               
               Cow position:chr18:35287891-35288134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:328-756
               
               
               Cow position:chr18:37599896-37599446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:329-756
               
               
               Cow position:chr18:46878331-46877917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:330-592
               
               
               Cow position:chr18:11275450-11275194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:330-751
               
               
               Cow position:chr18:16176968-16176536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:331-684
               
               
               Cow position:chr18:51660063-51660418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:345-728
               
               
               Cow position:chr18:45958356-45958736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:346-673
               
               
               Cow position:chr18:39748244-39748566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:346-728
               
               
               Cow position:chr18:48221533-48221930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:346-728
               
               
               Cow position:chr18:51257641-51258030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:346-733
               
               
               Cow position:chr18:32293437-32293826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:346-733
               
               
               Cow position:chr18:43147271-43146868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:346-742
               
               
               Cow position:chr18:23944717-23944309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:347-733
               
               
               Cow position:chr18:2020022-2019628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:350-733
               
               
               Cow position:chr18:33358523-33358925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 197

               
               
               Conread position:356-622
               
               
               Cow position:chr18:47719905-47719634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:362-684
               
               
               Cow position:chr18:22602157-22602488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:369-642
               
               
               Cow position:chr18:40478064-40478338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 94

               
               
               Conread position:375-642
               
               
               Cow position:chr18:33268529-33268796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:375-733
               
               
               Cow position:chr18:17992876-17992505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 168

               
               
               Conread position:378-642
               
               
               Cow position:chr18:32651684-32651950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:385-712
               
               
               Cow position:chr18:27986724-27987060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:405-751
               
               
               Cow position:chr18:44601258-44601609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:408-666
               
               
               Cow position:chr18:19540152-19539894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:435-751
               
               
               Cow position:chr18:16393894-16393564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:480-744
               
               
               Cow position:chr18:16877278-16877538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:494-678
               
               
               Cow position:chr18:54269276-54269461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:507-728
               
               
               Cow position:chr18:53785660-53785889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:289-642
               
               
               Cow position:chr19:171810-172170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-684
               
               
               Cow position:chr19:203562-203966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 293

               
               
               Conread position:289-712
               
               
               Cow position:chr19:55078349-55078783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:289-730
               
               
               Cow position:chr19:28582035-28581597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:289-750
               
               
               Cow position:chr19:39390126-39390593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-756
               
               
               Cow position:chr19:40852831-40852347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:296-666
               
               
               Cow position:chr19:772218-772584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 211

               
               
               Conread position:296-666
               
               
               Cow position:chr19:32212454-32212085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 165

               
               
               Conread position:296-675
               
               
               Cow position:chr19:52152641-52152265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):90, 164

               
               
               Conread position:296-730
               
               
               Cow position:chr19:32193190-32193636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:298-730
               
               
               Cow position:chr19:4385098-4385540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):167, 81

               
               
               Conread position:309-728
               
               
               Cow position:chr19:359872-359447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 155

               
               
               Conread position:315-751
               
               
               Cow position:chr19:7450366-7449937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 91

               
               
               Conread position:320-518
               
               
               Cow position:chr19:544258-544056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:320-684
               
               
               Cow position:chr19:32244313-32244689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:321-641
               
               
               Cow position:chr19:10672673-10672348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-684
               
               
               Cow position:chr19:685488-685848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:321-684
               
               
               Cow position:chr19:7341705-7342073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 234

               
               
               Conread position:321-728
               
               
               Cow position:chr19:20111591-20111171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):60, 261

               
               
               Conread position:323-728
               
               
               Cow position:chr19:35978905-35979321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:324-750
               
               
               Cow position:chr19:32183808-32183370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 233

               
               
               Conread position:327-703
               
               
               Cow position:chr19:1031751-1032131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 133

               
               
               Conread position:328-583
               
               
               Cow position:chr19:36477002-36477254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:328-584
               
               
               Cow position:chr19:6553050-6553293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:329-513
               
               
               Cow position:chr19:42247988-42248168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 53

               
               
               Conread position:330-756
               
               
               Cow position:chr19:20125274-20125704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:331-684
               
               
               Cow position:chr19:28592926-28593282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:337-727
               
               
               Cow position:chr19:536540-536928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:345-667
               
               
               Cow position:chr19:42649408-42649090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:346-642
               
               
               Cow position:chr19:33941270-33941571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:346-665
               
               
               Cow position:chr19:76574-76257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:346-733
               
               
               Cow position:chr19:4533081-4532690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:350-732
               
               
               Cow position:chr19:4252695-4252296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 223

               
               
               Conread position:351-684
               
               
               Cow position:chr19:43143379-43143721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:353-728
               
               
               Cow position:chr19:32665200-32665587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):113, 138

               
               
               Conread position:353-733
               
               
               Cow position:chr19:29209232-29209623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:354-684
               
               
               Cow position:chr19:171076-170737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:360-728
               
               
               Cow position:chr19:15953551-15953911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):176, 94

               
               
               Conread position:364-666
               
               
               Cow position:chr19:416325-416638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:364-733
               
               
               Cow position:chr19:30371952-30372346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 187

               
               
               Conread position:374-644
               
               
               Cow position:chr19:39688238-39688504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):159, 82

               
               
               Conread position:375-542
               
               
               Cow position:chr19:801680-801849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:378-712
               
               
               Cow position:chr19:7488005-7488350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:423-684
               
               
               Cow position:chr19:32202495-32202752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 140

               
               
               Conread position:473-681
               
               
               Cow position:chr19:17018316-17018517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:521-756
               
               
               Cow position:chr19:42299659-42299408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:538-756
               
               
               Cow position:chr19:42248670-42248897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 32

               
               
               Conread position:1-128
               
               
               Cow position:chr2:3748876-3749005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:243-684
               
               
               Cow position:chr2:49471247-49471694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):210, 161

               
               
               Conread position:272-642
               
               
               Cow position:chr2:11160100-11159725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 221

               
               
               Conread position:289-581
               
               
               Cow position:chr2:81255850-81256148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:289-730
               
               
               Cow position:chr2:50984183-50983727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:289-743
               
               
               Cow position:chr2:8117282-8117766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 218

               
               
               Conread position:289-744
               
               
               Cow position:chr2:80956599-80956129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 202

               
               
               Conread position:289-756
               
               
               Cow position:chr2:13046636-13046158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:328
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:291-666
               
               
               Cow position:chr2:41149107-41149471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:296-509
               
               
               Cow position:chr2:6879234-6879447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:296-644
               
               
               Cow position:chr2:78741201-78741538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):240, 83

               
               
               Conread position:296-666
               
               
               Cow position:chr2:3325518-3325137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):23, 321

               
               
               Conread position:296-666
               
               
               Cow position:chr2:25031414-25031048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:296-666
               
               
               Cow position:chr2:27816825-27817204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 319

               
               
               Conread position:296-666
               
               
               Cow position:chr2:67421784-67421417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):164, 78

               
               
               Conread position:296-684
               
               
               Cow position:chr2:2413741-2413349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:296-684
               
               
               Cow position:chr2:26865490-26865095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 192

               
               
               Conread position:296-684
               
               
               Cow position:chr2:39420645-39421040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:296-684
               
               
               Cow position:chr2:42672332-42671940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 196

               
               
               Conread position:296-684
               
               
               Cow position:chr2:51991481-51991083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:296-684
               
               
               Cow position:chr2:57142638-57142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-730
               
               
               Cow position:chr2:44090355-44090801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-741
               
               
               Cow position:chr2:213174-212706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 190

               
               
               Conread position:298-668
               
               
               Cow position:chr2:52615522-52615901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):24, 317

               
               
               Conread position:298-684
               
               
               Cow position:chr2:41656139-41656530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):24, 274

               
               
               Conread position:298-730
               
               
               Cow position:chr2:6959801-6960247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:300-642
               
               
               Cow position:chr2:19009291-19009635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:300-642
               
               
               Cow position:chr2:65939395-65939045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 196

               
               
               Conread position:300-666
               
               
               Cow position:chr2:51305834-51305480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:301-452
               
               
               Cow position:chr2:26655214-26655055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:301-576
               
               
               Cow position:chr2:36979157-36979439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:301-637
               
               
               Cow position:chr2:53328806-53329145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-638
               
               
               Cow position:chr2:10269602-10269263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 261

               
               
               Conread position:301-642
               
               
               Cow position:chr2:24921401-24921747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-666
               
               
               Cow position:chr2:36031999-36031641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:301-704
               
               
               Cow position:chr2:47810080-47810483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 160

               
               
               Conread position:301-712
               
               
               Cow position:chr2:28651170-28650747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:301-712
               
               
               Cow position:chr2:45214201-45213776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-728
               
               
               Cow position:chr2:53552245-53552671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:301-730
               
               
               Cow position:chr2:24145335-24145777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:303-756
               
               
               Cow position:chr2:43958691-43959142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:304-756
               
               
               Cow position:chr2:4235248-4235704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:305-584
               
               
               Cow position:chr2:73190897-73191181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:305-665
               
               
               Cow position:chr2:35352442-35352803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:305-751
               
               
               Cow position:chr2:43366862-43366403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:306-567
               
               
               Cow position:chr2:80516141-80516396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 53

               
               
               Conread position:311-712
               
               
               Cow position:chr2:283627-283213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:312-478
               
               
               Cow position:chr2:7210496-7210666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:316-703
               
               
               Cow position:chr2:44935992-44935613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:316-728
               
               
               Cow position:chr2:769314-768894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:317-728
               
               
               Cow position:chr2:75676790-75676381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:317-756
               
               
               Cow position:chr2:42334194-42333761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:319-756
               
               
               Cow position:chr2:32388642-32389091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 167

               
               
               Conread position:320-733
               
               
               Cow position:chr2:36990974-36991395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:321-727
               
               
               Cow position:chr2:38589261-38589664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 246

               
               
               Conread position:321-730
               
               
               Cow position:chr2:59414587-59414178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:321-750
               
               
               Cow position:chr2:57334282-57334712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:321-756
               
               
               Cow position:chr2:11724920-11725379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 256

               
               
               Conread position:321-756
               
               
               Cow position:chr2:77207756-77208183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:322-585
               
               
               Cow position:chr2:6877574-6877836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:323-728
               
               
               Cow position:chr2:63293488-63293074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 64

               
               
               Conread position:323-756
               
               
               Cow position:chr2:52152775-52152325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 222

               
               
               Conread position:324-675
               
               
               Cow position:chr2:54736708-54737062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:325-642
               
               
               Cow position:chr2:25889127-25888805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 222

               
               
               Conread position:325-756
               
               
               Cow position:chr2:5871246-5870804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:328-728
               
               
               Cow position:chr2:32458929-32458508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:329-728
               
               
               Cow position:chr2:3729828-3730229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:329-728
               
               
               Cow position:chr2:3748999-3749406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:330-640
               
               
               Cow position:chr2:52061755-52062067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 243

               
               
               Conread position:330-733
               
               
               Cow position:chr2:82166702-82167113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:330-756
               
               
               Cow position:chr2:20921681-20921259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:331-628
               
               
               Cow position:chr2:29102302-29102606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:331-728
               
               
               Cow position:chr2:56438627-56438222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:333-684
               
               
               Cow position:chr2:78761578-78761923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:337-741
               
               
               Cow position:chr2:52655571-52655982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:338-677
               
               
               Cow position:chr2:44992186-44991841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:338-755
               
               
               Cow position:chr2:16288348-16288766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:341-726
               
               
               Cow position:chr2:10733726-10733342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:344-585
               
               
               Cow position:chr2:15578553-15578312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:345-665
               
               
               Cow position:chr2:16899345-16899673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:346-531
               
               
               Cow position:chr2:44166238-44166055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:346-583
               
               
               Cow position:chr2:2363255-2363496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:346-666
               
               
               Cow position:chr2:5481531-5481214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):105, 196

               
               
               Conread position:346-728
               
               
               Cow position:chr2:16077189-16076799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:346-728
               
               
               Cow position:chr2:44345815-44346215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:346-728
               
               
               Cow position:chr2:72922728-72922332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 224

               
               
               Conread position:346-742
               
               
               Cow position:chr2:10844235-10843824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:346-756
               
               
               Cow position:chr2:202550-202119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:348-637
               
               
               Cow position:chr2:1647273-1647553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:348-684
               
               
               Cow position:chr2:32654456-32654795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:350-750
               
               
               Cow position:chr2:10712300-10711909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:351-642
               
               
               Cow position:chr2:14560306-14560601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:352-733
               
               
               Cow position:chr2:85356661-85356265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 227

               
               
               Conread position:352-756
               
               
               Cow position:chr2:54649691-54649272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:353-642
               
               
               Cow position:chr2:5905740-5905446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:353-684
               
               
               Cow position:chr2:41685621-41685961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 247

               
               
               Conread position:353-712
               
               
               Cow position:chr2:976163-975798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:353-750
               
               
               Cow position:chr2:34475772-34475367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:354-728
               
               
               Cow position:chr2:52174192-52173818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:356-631
               
               
               Cow position:chr2:22076905-22077179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:356-728
               
               
               Cow position:chr2:43363815-43364195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:359-684
               
               
               Cow position:chr2:75250887-75251202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:361-642
               
               
               Cow position:chr2:50076725-50077006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:362-727
               
               
               Cow position:chr2:50321415-50321779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:407-684
               
               
               Cow position:chr2:2185093-2184809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:409-756
               
               
               Cow position:chr2:38372014-38372370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:412-741
               
               
               Cow position:chr2:6772993-6772659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:416-756
               
               
               Cow position:chr2:67430246-67430573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:425-748
               
               
               Cow position:chr2:3439571-3439910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:427-756
               
               
               Cow position:chr2:72109331-72108994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:471-684
               
               
               Cow position:chr2:37790917-37790705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:543-735
               
               
               Cow position:chr2:50402577-50402780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:1-128
               
               
               Cow position:chr20:7086783-7086657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:289-584
               
               
               Cow position:chr20:8004956-8004654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:289-642
               
               
               Cow position:chr20:23470104-23469743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr20:27868754-27869113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:289-684
               
               
               Cow position:chr20:21913895-21914288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:289-685
               
               
               Cow position:chr20:23798439-23798845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 205

               
               
               Conread position:289-712
               
               
               Cow position:chr20:30683895-30684329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:296-564
               
               
               Cow position:chr20:31123969-31124244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-573
               
               
               Cow position:chr20:822321-822598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-684
               
               
               Cow position:chr20:19437528-19437920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:297-756
               
               
               Cow position:chr20:29572626-29572145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:298-684
               
               
               Cow position:chr20:25851429-25851028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:299-723
               
               
               Cow position:chr20:8994245-8993810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:301-642
               
               
               Cow position:chr20:7116901-7116553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:301-750
               
               
               Cow position:chr20:20755860-20755386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:303-730
               
               
               Cow position:chr20:21393142-21393579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 244

               
               
               Conread position:311-703
               
               
               Cow position:chr20:12439182-12438775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 183

               
               
               Conread position:316-475
               
               
               Cow position:chr20:13435573-13435418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:316-756
               
               
               Cow position:chr20:2791764-2791303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:319-684
               
               
               Cow position:chr20:13665578-13665239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:321-728
               
               
               Cow position:chr20:22718076-22717681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):160, 35

               
               
               Conread position:321-756
               
               
               Cow position:chr20:2676711-2677164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:321-756
               
               
               Cow position:chr20:22206126-22206590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:328-756
               
               
               Cow position:chr20:28593341-28593786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:329-600
               
               
               Cow position:chr20:5575291-5575553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:330-693
               
               
               Cow position:chr20:35103553-35103922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:331-750
               
               
               Cow position:chr20:20905581-20905164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 167

               
               
               Conread position:334-629
               
               
               Cow position:chr20:11276671-11276393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):199, 7

               
               
               Conread position:345-640
               
               
               Cow position:chr20:10102926-10102635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:345-728
               
               
               Cow position:chr20:24614165-24614551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:346-666
               
               
               Cow position:chr20:3252524-3252191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 204

               
               
               Conread position:346-728
               
               
               Cow position:chr20:4800030-4799637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:346-756
               
               
               Cow position:chr20:8313811-8313391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:353-756
               
               
               Cow position:chr20:28160403-28160824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 139

               
               
               Conread position:356-730
               
               
               Cow position:chr20:13762531-13762918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:357-684
               
               
               Cow position:chr20:5561089-5560753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 256

               
               
               Conread position:361-642
               
               
               Cow position:chr20:15064397-15064685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 142

               
               
               Conread position:363-666
               
               
               Cow position:chr20:24516503-24516808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:364-728
               
               
               Cow position:chr20:5483827-5484203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:369-733
               
               
               Cow position:chr20:13757900-13758275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 192

               
               
               Conread position:375-632
               
               
               Cow position:chr20:3032584-3032835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 89

               
               
               Conread position:375-642
               
               
               Cow position:chr20:28565954-28565680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:408-732
               
               
               Cow position:chr20:7085889-7085559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:461-684
               
               
               Cow position:chr20:19192395-19192166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:462-703
               
               
               Cow position:chr20:35119059-35119310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:289-642
               
               
               Cow position:chr21:1190717-1191083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):13, 257

               
               
               Conread position:289-642
               
               
               Cow position:chr21:31559972-31559619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:289-730
               
               
               Cow position:chr21:10566354-10566808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 286

               
               
               Conread position:289-730
               
               
               Cow position:chr21:10849755-10850215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-756
               
               
               Cow position:chr21:2476832-2476360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:296-502
               
               
               Cow position:chr21:19609798-19610010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-666
               
               
               Cow position:chr21:37044604-37044974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:296-684
               
               
               Cow position:chr21:4090331-4090730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 308

               
               
               Conread position:296-684
               
               
               Cow position:chr21:11505270-11505668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:296-684
               
               
               Cow position:chr21:26638774-26638384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-684
               
               
               Cow position:chr21:26819331-26818940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 275

               
               
               Conread position:296-684
               
               
               Cow position:chr21:28529860-28529463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:296-684
               
               
               Cow position:chr21:39424751-39425144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-750
               
               
               Cow position:chr21:2510339-2510796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:300-684
               
               
               Cow position:chr21:4083341-4083727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:301-666
               
               
               Cow position:chr21:2501625-2501991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:301-675
               
               
               Cow position:chr21:46915280-46915659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:304-648
               
               
               Cow position:chr21:23704732-23705071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:305-642
               
               
               Cow position:chr21:33251083-33251427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 190

               
               
               Conread position:305-728
               
               
               Cow position:chr21:23860478-23860914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:305-750
               
               
               Cow position:chr21:27708453-27708908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 310

               
               
               Conread position:308-756
               
               
               Cow position:chr21:993326-992859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:311-666
               
               
               Cow position:chr21:13124298-13123938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:314-565
               
               
               Cow position:chr21:18692457-18692717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:320-742
               
               
               Cow position:chr21:358733-359162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:321-642
               
               
               Cow position:chr21:34055204-34054880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:321-684
               
               
               Cow position:chr21:11453944-11453575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:321-684
               
               
               Cow position:chr21:12056288-12055919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 253

               
               
               Conread position:321-684
               
               
               Cow position:chr21:17572639-17573002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):139, 65

               
               
               Conread position:322-494
               
               
               Cow position:chr21:35089415-35089587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:334-742
               
               
               Cow position:chr21:4183266-4183673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:334-756
               
               
               Cow position:chr21:20745017-20744598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:338-756
               
               
               Cow position:chr21:21516937-21517357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 146

               
               
               Conread position:345-756
               
               
               Cow position:chr21:216046-216468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:346-664
               
               
               Cow position:chr21:2530392-2530068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:346-728
               
               
               Cow position:chr21:2716935-2716550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):31, 139

               
               
               Conread position:346-728
               
               
               Cow position:chr21:2769717-2769327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):188, 115

               
               
               Conread position:346-728
               
               
               Cow position:chr21:3615028-3615425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:346-733
               
               
               Cow position:chr21:34292756-34293155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:346-733
               
               
               Cow position:chr21:35596115-35596506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:346-733
               
               
               Cow position:chr21:47939213-47939614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 352

               
               
               Conread position:346-752
               
               
               Cow position:chr21:34259476-34259063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):117, 197

               
               
               Conread position:350-731
               
               
               Cow position:chr21:444880-445260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:353-641
               
               
               Cow position:chr21:3778509-3778801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:353-730
               
               
               Cow position:chr21:36714383-36714767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:356-730
               
               
               Cow position:chr21:47947862-47948244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:358-733
               
               
               Cow position:chr21:2789231-2788853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:359-756
               
               
               Cow position:chr21:48115855-48116270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 215

               
               
               Conread position:363-727
               
               
               Cow position:chr21:25992867-25992501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 206

               
               
               Conread position:364-728
               
               
               Cow position:chr21:4222943-4222554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:369-684
               
               
               Cow position:chr21:9891372-9891675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:374-582
               
               
               Cow position:chr21:2674873-2674662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:374-756
               
               
               Cow position:chr21:26147133-26146768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):161, 30

               
               
               Conread position:378-756
               
               
               Cow position:chr21:6699793-6699407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 170

               
               
               Conread position:385-684
               
               
               Cow position:chr21:30561577-30561883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:502-660
               
               
               Cow position:chr21:10762086-10762247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:604-756
               
               
               Cow position:chr21:3194393-3194552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:289-684
               
               
               Cow position:chr22:19144195-19143791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):13, 243

               
               
               Conread position:289-752
               
               
               Cow position:chr22:39470014-39469533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:291-722
               
               
               Cow position:chr22:8136699-8136246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:291-756
               
               
               Cow position:chr22:1321131-1321601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:311
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:296-642
               
               
               Cow position:chr22:35672846-35672493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 197

               
               
               Conread position:296-666
               
               
               Cow position:chr22:44370104-44369732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 175

               
               
               Conread position:296-675
               
               
               Cow position:chr22:18476251-18475867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 195

               
               
               Conread position:296-684
               
               
               Cow position:chr22:693151-693540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):6, 45

               
               
               Conread position:296-684
               
               
               Cow position:chr22:3278840-3278445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):6, 165

               
               
               Conread position:296-684
               
               
               Cow position:chr22:24949339-24949738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-684
               
               
               Cow position:chr22:27310267-27309865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 322

               
               
               Conread position:296-703
               
               
               Cow position:chr22:5233787-5233373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-707
               
               
               Cow position:chr22:44489396-44489823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 283

               
               
               Conread position:296-730
               
               
               Cow position:chr22:6984764-6985217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-730
               
               
               Cow position:chr22:10546160-10546607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 273

               
               
               Conread position:301-642
               
               
               Cow position:chr22:31335515-31335171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:301-665
               
               
               Cow position:chr22:44933495-44933867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:319-666
               
               
               Cow position:chr22:10910318-10909969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 219

               
               
               Conread position:319-673
               
               
               Cow position:chr22:13772332-13772676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:320-665
               
               
               Cow position:chr22:46585776-46585424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:321-592
               
               
               Cow position:chr22:5307653-5307931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 173

               
               
               Conread position:321-642
               
               
               Cow position:chr22:34167868-34168194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:321-663
               
               
               Cow position:chr22:1046923-1047262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:321-671
               
               
               Cow position:chr22:44456848-44457209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:321-728
               
               
               Cow position:chr22:33350704-33351129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 269

               
               
               Conread position:321-730
               
               
               Cow position:chr22:561162-560743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 281

               
               
               Conread position:328-675
               
               
               Cow position:chr22:20207639-20207283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:328-756
               
               
               Cow position:chr22:7277065-7277516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:329-749
               
               
               Cow position:chr22:871288-870877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:330-642
               
               
               Cow position:chr22:17329191-17328877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:330-642
               
               
               Cow position:chr22:44395328-44395643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:330-730
               
               
               Cow position:chr22:44353402-44352994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):58, 163

               
               
               Conread position:334-666
               
               
               Cow position:chr22:1285382-1285043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:337-728
               
               
               Cow position:chr22:1293939-1293536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:345-590
               
               
               Cow position:chr22:41420124-41419874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 200

               
               
               Conread position:345-727
               
               
               Cow position:chr22:309284-309674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:346-583
               
               
               Cow position:chr22:42771109-42771353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:346-644
               
               
               Cow position:chr22:37067347-37067050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:346-728
               
               
               Cow position:chr22:1318956-1319357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:350-583
               
               
               Cow position:chr22:36534399-36534160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:351-689
               
               
               Cow position:chr22:46636127-46635788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:353-628
               
               
               Cow position:chr22:21588901-21589181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:353-642
               
               
               Cow position:chr22:31312913-31313203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:356-641
               
               
               Cow position:chr22:42990743-42991034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:356-660
               
               
               Cow position:chr22:41474753-41474454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:360-712
               
               
               Cow position:chr22:36861953-36861590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):105, 131

               
               
               Conread position:364-755
               
               
               Cow position:chr22:118236-117824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 214

               
               
               Conread position:374-752
               
               
               Cow position:chr22:18816790-18816395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:395-756
               
               
               Cow position:chr22:13737820-13737474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:412-642
               
               
               Cow position:chr22:32485698-32485474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:412-684
               
               
               Cow position:chr22:4065270-4065549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:414-678
               
               
               Cow position:chr22:10964814-10965089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:414-684
               
               
               Cow position:chr22:1878425-1878700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:446-727
               
               
               Cow position:chr22:36267040-36267329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:471-684
               
               
               Cow position:chr22:34598368-34598581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:512-728
               
               
               Cow position:chr22:11782800-11782578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:545-678
               
               
               Cow position:chr22:8874732-8874867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 21

               
               
               Conread position:569-756
               
               
               Cow position:chr22:298542-298342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 6

               
               
               Conread position:589-726
               
               
               Cow position:chr22:41237701-41237848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:289-642
               
               
               Cow position:chr23:2715854-2716214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr23:15220390-15220035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:289-642
               
               
               Cow position:chr23:19489043-19489400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-644
               
               
               Cow position:chr23:4641117-4640760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:289-684
               
               
               Cow position:chr23:27399009-27399412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-684
               
               
               Cow position:chr23:28912916-28913320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:289-712
               
               
               Cow position:chr23:36031867-36031433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 258

               
               
               Conread position:289-752
               
               
               Cow position:chr23:4815581-4816063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-752
               
               
               Cow position:chr23:11777989-11778462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:296-684
               
               
               Cow position:chr23:4359347-4359738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:298-685
               
               
               Cow position:chr23:28216803-28217199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 303

               
               
               Conread position:298-756
               
               
               Cow position:chr23:19332883-19332413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:299-567
               
               
               Cow position:chr23:14966457-14966185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:301-684
               
               
               Cow position:chr23:3882179-3881790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:301-756
               
               
               Cow position:chr23:34174704-34175177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 187

               
               
               Conread position:305-665
               
               
               Cow position:chr23:2796043-2795678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 190

               
               
               Conread position:305-681
               
               
               Cow position:chr23:19449541-19449928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:306-752
               
               
               Cow position:chr23:4888218-4888665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:306
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:309-730
               
               
               Cow position:chr23:16617310-16616887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:315-684
               
               
               Cow position:chr23:4434005-4434371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:319-642
               
               
               Cow position:chr23:20301748-20302077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:320-642
               
               
               Cow position:chr23:22147723-22147395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 224

               
               
               Conread position:321-570
               
               
               Cow position:chr23:14975225-14974978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:321-578
               
               
               Cow position:chr23:22876091-22875833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:329-756
               
               
               Cow position:chr23:2339951-2340392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:331-733
               
               
               Cow position:chr23:19017256-19017660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:346-673
               
               
               Cow position:chr23:5779524-5779189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:346-728
               
               
               Cow position:chr23:5875210-5874814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 254

               
               
               Conread position:346-733
               
               
               Cow position:chr23:4276520-4276920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 212

               
               
               Conread position:346-756
               
               
               Cow position:chr23:7273228-7273637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:347-664
               
               
               Cow position:chr23:31595616-31595291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:348-728
               
               
               Cow position:chr23:1025486-1025101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:350-728
               
               
               Cow position:chr23:3013197-3013606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 272

               
               
               Conread position:353-640
               
               
               Cow position:chr23:15525182-15525472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:353-642
               
               
               Cow position:chr23:967779-967483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:359-645
               
               
               Cow position:chr23:1330711-1330424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:364-730
               
               
               Cow position:chr23:2765788-2765423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:364-756
               
               
               Cow position:chr23:989061-988647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:374-756
               
               
               Cow position:chr23:16481759-16481369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:381-730
               
               
               Cow position:chr23:30636703-30636339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:385-756
               
               
               Cow position:chr23:13508674-13509062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:412-684
               
               
               Cow position:chr23:31446444-31446723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:415-666
               
               
               Cow position:chr23:8980856-8980604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:462-684
               
               
               Cow position:chr23:2313557-2313329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 148

               
               
               Conread position:463-675
               
               
               Cow position:chr23:16616181-16615969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:493-722
               
               
               Cow position:chr23:7750105-7750345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:289-629
               
               
               Cow position:chr24:14385020-14384678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:289-659
               
               
               Cow position:chr24:6057268-6057639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:296-531
               
               
               Cow position:chr24:7712696-7712462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:296-578
               
               
               Cow position:chr24:5993375-5993089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:296-582
               
               
               Cow position:chr24:20267813-20268106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-684
               
               
               Cow position:chr24:6083612-6084011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-684
               
               
               Cow position:chr24:6645013-6645407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):26, 280

               
               
               Conread position:296-684
               
               
               Cow position:chr24:9189135-9188737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 179

               
               
               Conread position:296-684
               
               
               Cow position:chr24:22792771-22793168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):26, 277

               
               
               Conread position:296-684
               
               
               Cow position:chr24:44017141-44017540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:296-730
               
               
               Cow position:chr24:6433833-6434289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):30, 322

               
               
               Conread position:296-730
               
               
               Cow position:chr24:7060707-7061148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:296-733
               
               
               Cow position:chr24:6335293-6335748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:301-573
               
               
               Cow position:chr24:13181730-13181460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:301-756
               
               
               Cow position:chr24:12798145-12797688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:304-742
               
               
               Cow position:chr24:17187152-17187600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:305-703
               
               
               Cow position:chr24:12114426-12114023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:310-756
               
               
               Cow position:chr24:39678059-39678489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:312-642
               
               
               Cow position:chr24:12085813-12086146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:317-666
               
               
               Cow position:chr24:15392678-15392335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:318-750
               
               
               Cow position:chr24:6351812-6352246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 369

               
               
               Conread position:320-684
               
               
               Cow position:chr24:16649672-16649306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:321-566
               
               
               Cow position:chr24:29186428-29186678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-642
               
               
               Cow position:chr24:19833006-19833329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:321-728
               
               
               Cow position:chr24:12289094-12288683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:321-728
               
               
               Cow position:chr24:32330969-32331371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 219

               
               
               Conread position:321-756
               
               
               Cow position:chr24:14873718-14873273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 396

               
               
               Conread position:323-756
               
               
               Cow position:chr24:14885619-14885175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:324-669
               
               
               Cow position:chr24:36707486-36707827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 166

               
               
               Conread position:324-756
               
               
               Cow position:chr24:36296793-36297235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 163

               
               
               Conread position:328-571
               
               
               Cow position:chr24:32125863-32125630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:328-684
               
               
               Cow position:chr24:13021301-13021662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):59, 264

               
               
               Conread position:328-684
               
               
               Cow position:chr24:33739713-33739350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):58, 205

               
               
               Conread position:329-756
               
               
               Cow position:chr24:35841972-35841543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:334-585
               
               
               Cow position:chr24:37216363-37216618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:338-572
               
               
               Cow position:chr24:35991012-35990777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:341-756
               
               
               Cow position:chr24:6537214-6537621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:345-665
               
               
               Cow position:chr24:12161527-12161852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:345-671
               
               
               Cow position:chr24:12207790-12208113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 120

               
               
               Conread position:345-728
               
               
               Cow position:chr24:35838979-35838579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:348-650
               
               
               Cow position:chr24:12236711-12237008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:359-642
               
               
               Cow position:chr24:4415871-4415577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 249

               
               
               Conread position:366-684
               
               
               Cow position:chr24:12485650-12485323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 238

               
               
               Conread position:367-644
               
               
               Cow position:chr24:29325853-29326129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:374-666
               
               
               Cow position:chr24:36560394-36560109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):147, 82

               
               
               Conread position:375-579
               
               
               Cow position:chr24:37301395-37301191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:378-756
               
               
               Cow position:chr24:12567936-12568318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:426-730
               
               
               Cow position:chr24:2635849-2636168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 185

               
               
               Conread position:435-666
               
               
               Cow position:chr24:8029889-8030125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 176

               
               
               Conread position:465-728
               
               
               Cow position:chr24:584427-584159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:490-751
               
               
               Cow position:chr24:12940003-12940270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:1-128
               
               
               Cow position:chr25:20493830-20493959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-128
               
               
               Cow position:chr25:24171491-24171618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:289-581
               
               
               Cow position:chr25:18302319-18302621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:289-642
               
               
               Cow position:chr25:13780583-13780936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:289-642
               
               
               Cow position:chr25:18890469-18890110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:289-642
               
               
               Cow position:chr25:22147041-22147399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:289-665
               
               
               Cow position:chr25:25506195-25506580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:296-684
               
               
               Cow position:chr25:20777346-20776947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 320

               
               
               Conread position:301-622
               
               
               Cow position:chr25:8674487-8674800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:301-666
               
               
               Cow position:chr25:12760051-12759665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:301-675
               
               
               Cow position:chr25:17589985-17589607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:305-732
               
               
               Cow position:chr25:19288774-19288348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:306-536
               
               
               Cow position:chr25:18172915-18173135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:307-730
               
               
               Cow position:chr25:26278842-26279270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 127

               
               
               Conread position:310-724
               
               
               Cow position:chr25:18092590-18093017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:312-577
               
               
               Cow position:chr25:23346118-23345862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:315-756
               
               
               Cow position:chr25:20493937-20494376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:317-728
               
               
               Cow position:chr25:11933945-11933523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:321-684
               
               
               Cow position:chr25:19916668-19917034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 143

               
               
               Conread position:321-684
               
               
               Cow position:chr25:35362840-35362472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 271

               
               
               Conread position:321-756
               
               
               Cow position:chr25:18255775-18255332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:321-756
               
               
               Cow position:chr25:24171604-24172055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:324-728
               
               
               Cow position:chr25:18411699-18411286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):55, 161

               
               
               Conread position:328-698
               
               
               Cow position:chr25:26921817-26922193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 272

               
               
               Conread position:330-756
               
               
               Cow position:chr25:26866811-26867249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 216

               
               
               Conread position:338-756
               
               
               Cow position:chr25:18276224-18275797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:346-728
               
               
               Cow position:chr25:11375742-11375345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 256

               
               
               Conread position:360-730
               
               
               Cow position:chr25:20629195-20629582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:364-726
               
               
               Cow position:chr25:18028006-18027625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:385-733
               
               
               Cow position:chr25:34656800-34656437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:433-703
               
               
               Cow position:chr25:33991364-33991084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:462-728
               
               
               Cow position:chr25:36240276-36240549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:488-728
               
               
               Cow position:chr25:18060836-18060586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:546-756
               
               
               Cow position:chr25:13454983-13454765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:289-684
               
               
               Cow position:chr26:19351947-19351543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:295-531
               
               
               Cow position:chr26:34012590-34012835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:296-579
               
               
               Cow position:chr26:24201195-24201486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-580
               
               
               Cow position:chr26:19998060-19998351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-582
               
               
               Cow position:chr26:3031236-3030944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 249

               
               
               Conread position:296-642
               
               
               Cow position:chr26:30782342-30782691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:296-666
               
               
               Cow position:chr26:11254488-11254105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:296-675
               
               
               Cow position:chr26:2352775-2352396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:296-675
               
               
               Cow position:chr26:9112039-9112429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:296-684
               
               
               Cow position:chr26:12588987-12588593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:269
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:297-756
               
               
               Cow position:chr26:3074110-3074579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 150

               
               
               Conread position:300-756
               
               
               Cow position:chr26:8869457-8869934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:301-642
               
               
               Cow position:chr26:9563779-9563432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:305-724
               
               
               Cow position:chr26:20262452-20262880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):231, 23

               
               
               Conread position:317-756
               
               
               Cow position:chr26:5674765-5675216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:320-644
               
               
               Cow position:chr26:6516464-6516783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:321-684
               
               
               Cow position:chr26:2198246-2198599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):214, 65

               
               
               Conread position:346-567
               
               
               Cow position:chr26:9846510-9846283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 116

               
               
               Conread position:346-666
               
               
               Cow position:chr26:3691428-3691758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 202

               
               
               Conread position:346-727
               
               
               Cow position:chr26:23605284-23604878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:346-728
               
               
               Cow position:chr26:12574771-12574373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):31, 249

               
               
               Conread position:349-684
               
               
               Cow position:chr26:18854723-18855060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:356-684
               
               
               Cow position:chr26:20254710-20255040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:358-642
               
               
               Cow position:chr26:6850537-6850248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 135

               
               
               Conread position:361-728
               
               
               Cow position:chr26:12665629-12665994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:363-703
               
               
               Cow position:chr26:15145115-15144765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 237

               
               
               Conread position:364-728
               
               
               Cow position:chr26:4605537-4605160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):11, 151

               
               
               Conread position:369-655
               
               
               Cow position:chr26:30675306-30675041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:369-668
               
               
               Cow position:chr26:16904437-16904730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:462-666
               
               
               Cow position:chr26:11537089-11536880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:1-129
               
               
               Cow position:chr27:21288798-21288667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:289-627
               
               
               Cow position:chr27:27662397-27662741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-641
               
               
               Cow position:chr27:23334667-23335026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:289-641
               
               
               Cow position:chr27:26324317-26324677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr27:13897698-13898058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr27:14460953-14460594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):13, 315

               
               
               Conread position:289-684
               
               
               Cow position:chr27:1208860-1209260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:296-666
               
               
               Cow position:chr27:15540841-15541217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:308-677
               
               
               Cow position:chr27:2364277-2364653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:308-756
               
               
               Cow position:chr27:28890256-28890719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:310-644
               
               
               Cow position:chr27:25116782-25117108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:321-684
               
               
               Cow position:chr27:16034855-16034484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 192

               
               
               Conread position:321-708
               
               
               Cow position:chr27:9993654-9993268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:329-707
               
               
               Cow position:chr27:5906580-5906961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:351-728
               
               
               Cow position:chr27:25999481-25999107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:356-730
               
               
               Cow position:chr27:25805305-25804921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:358-756
               
               
               Cow position:chr27:25002958-25002541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 239

               
               
               Conread position:364-642
               
               
               Cow position:chr27:27051244-27051527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:364-666
               
               
               Cow position:chr27:16438914-16439212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:378-756
               
               
               Cow position:chr27:21288615-21288234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 179

               
               
               Conread position:380-728
               
               
               Cow position:chr27:15278467-15278106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):83, 162

               
               
               Conread position:440-684
               
               
               Cow position:chr27:24560876-24561123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:1-129
               
               
               Cow position:chr28:17311280-17311407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:289-642
               
               
               Cow position:chr28:3193228-3192884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:289-642
               
               
               Cow position:chr28:5565408-5565768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr28:13522280-13522634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-684
               
               
               Cow position:chr28:1168617-1168214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-684
               
               
               Cow position:chr28:8378113-8378517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 207

               
               
               Conread position:289-703
               
               
               Cow position:chr28:29819118-29819545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:289-729
               
               
               Cow position:chr28:17388028-17388487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-730
               
               
               Cow position:chr28:781944-782402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):13, 207

               
               
               Conread position:289-752
               
               
               Cow position:chr28:2083151-2083630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:313
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):13, 257

               
               
               Conread position:291-531
               
               
               Cow position:chr28:7790685-7790444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:293-728
               
               
               Cow position:chr28:2591479-2591919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:296-666
               
               
               Cow position:chr28:13441323-13440944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-684
               
               
               Cow position:chr28:5796384-5796768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:296-730
               
               
               Cow position:chr28:15950535-15950986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-756
               
               
               Cow position:chr28:1952697-1953165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:301-642
               
               
               Cow position:chr28:22261591-22261244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 244

               
               
               Conread position:301-642
               
               
               Cow position:chr28:34593403-34593750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 193

               
               
               Conread position:301-712
               
               
               Cow position:chr28:17667952-17667529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 303

               
               
               Conread position:301-730
               
               
               Cow position:chr28:13459534-13459976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:301-730
               
               
               Cow position:chr28:18520901-18520454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:305-679
               
               
               Cow position:chr28:3774272-3773889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:316-750
               
               
               Cow position:chr28:34324409-34324850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 49

               
               
               Conread position:316-756
               
               
               Cow position:chr28:15584973-15585422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 176

               
               
               Conread position:320-565
               
               
               Cow position:chr28:6657760-6657514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:320-666
               
               
               Cow position:chr28:15920879-15920533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:321-489
               
               
               Cow position:chr28:18102322-18102154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:321-532
               
               
               Cow position:chr28:489071-489286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:321-533
               
               
               Cow position:chr28:17311392-17311598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 53

               
               
               Conread position:321-673
               
               
               Cow position:chr28:32792798-32792439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-730
               
               
               Cow position:chr28:14750128-14750554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):17, 293

               
               
               Conread position:328-684
               
               
               Cow position:chr28:6780739-6780377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:328-728
               
               
               Cow position:chr28:1387801-1387390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:329-728
               
               
               Cow position:chr28:22827653-22828055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 129

               
               
               Conread position:331-684
               
               
               Cow position:chr28:18089411-18089055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:345-733
               
               
               Cow position:chr28:5812318-5812717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:345-733
               
               
               Cow position:chr28:21358626-21359018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:346-665
               
               
               Cow position:chr28:21325400-21325721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:346-666
               
               
               Cow position:chr28:9953740-9954069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:346-672
               
               
               Cow position:chr28:9155670-9155346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:346-728
               
               
               Cow position:chr28:15681499-15681892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:348-619
               
               
               Cow position:chr28:34648552-34648816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:348-728
               
               
               Cow position:chr28:8721836-8721444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:350-703
               
               
               Cow position:chr28:7900974-7901326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:351-664
               
               
               Cow position:chr28:18181737-18181428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:355-609
               
               
               Cow position:chr28:15617428-15617673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:356-579
               
               
               Cow position:chr28:26007652-26007877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:356-642
               
               
               Cow position:chr28:10582369-10582079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):37, 137

               
               
               Conread position:359-712
               
               
               Cow position:chr28:12149941-12150295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:368-732
               
               
               Cow position:chr28:32331768-32331398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:382-642
               
               
               Cow position:chr28:1815223-1814961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 109

               
               
               Conread position:409-650
               
               
               Cow position:chr28:14491136-14491374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:412-641
               
               
               Cow position:chr28:7001662-7001894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:414-749
               
               
               Cow position:chr28:10591696-10591352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:488-728
               
               
               Cow position:chr28:4381067-4380834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:490-725
               
               
               Cow position:chr28:2846740-2846508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:491-756
               
               
               Cow position:chr28:18102171-18101901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:507-733
               
               
               Cow position:chr28:24652062-24652301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr29:19893205-19893327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-127
               
               
               Cow position:chr29:4635511-4635400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:271-684
               
               
               Cow position:chr29:35296395-35296793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:272-666
               
               
               Cow position:chr29:803832-803427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:285-752
               
               
               Cow position:chr29:39080197-39079709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 210

               
               
               Conread position:289-642
               
               
               Cow position:chr29:19652621-19652981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr29:23975346-23975709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):13, 163

               
               
               Conread position:289-644
               
               
               Cow position:chr29:20250672-20251034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 173

               
               
               Conread position:289-712
               
               
               Cow position:chr29:7431703-7431265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-712
               
               
               Cow position:chr29:26165305-26164872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:289-752
               
               
               Cow position:chr29:40503466-40502980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:319
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:295-756
               
               
               Cow position:chr29:104105-104571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:296-641
               
               
               Cow position:chr29:16109248-16109601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):30, 307

               
               
               Conread position:296-666
               
               
               Cow position:chr29:13577947-13578317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:296-684
               
               
               Cow position:chr29:27250813-27250416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:296-684
               
               
               Cow position:chr29:28061146-28060747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:301-642
               
               
               Cow position:chr29:48950-48603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:301-642
               
               
               Cow position:chr29:6266966-6266621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-644
               
               
               Cow position:chr29:2841839-2841494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-712
               
               
               Cow position:chr29:19623718-19623297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 274

               
               
               Conread position:302-727
               
               
               Cow position:chr29:19893296-19893733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:305-642
               
               
               Cow position:chr29:21246098-21246442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 196

               
               
               Conread position:306-642
               
               
               Cow position:chr29:34800270-34799937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:308-712
               
               
               Cow position:chr29:43322092-43322510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 186

               
               
               Conread position:316-558
               
               
               Cow position:chr29:34752140-34751904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:321-583
               
               
               Cow position:chr29:45587751-45587484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 172

               
               
               Conread position:321-642
               
               
               Cow position:chr29:38226542-38226874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:321-666
               
               
               Cow position:chr29:32315589-32315939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 159

               
               
               Conread position:321-684
               
               
               Cow position:chr29:15895299-15894932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 251

               
               
               Conread position:321-684
               
               
               Cow position:chr29:15969594-15969232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:321-713
               
               
               Cow position:chr29:32539358-32539762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:321-730
               
               
               Cow position:chr29:2099393-2099817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:321-756
               
               
               Cow position:chr29:4635413-4634969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:322-650
               
               
               Cow position:chr29:9644174-9643842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):9, 253

               
               
               Conread position:322-728
               
               
               Cow position:chr29:15950629-15950211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:324-651
               
               
               Cow position:chr29:10648695-10648367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):63, 169

               
               
               Conread position:328-623
               
               
               Cow position:chr29:19906208-19906502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:328-728
               
               
               Cow position:chr29:11841262-11841634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:329-720
               
               
               Cow position:chr29:30811106-30811494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:330-642
               
               
               Cow position:chr29:25932988-25932671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:330-684
               
               
               Cow position:chr29:31121364-31121724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 203

               
               
               Conread position:346-733
               
               
               Cow position:chr29:11048854-11049256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 200

               
               
               Conread position:346-756
               
               
               Cow position:chr29:35196259-35196671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:351-735
               
               
               Cow position:chr29:24199024-24198644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:356-642
               
               
               Cow position:chr29:45459302-45459589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):23, 217

               
               
               Conread position:361-732
               
               
               Cow position:chr29:14013059-14013445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 374

               
               
               Conread position:361-732
               
               
               Cow position:chr29:14073354-14072966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 376

               
               
               Conread position:364-642
               
               
               Cow position:chr29:12796873-12796593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:364-728
               
               
               Cow position:chr29:21543782-21543394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:364-756
               
               
               Cow position:chr29:27041170-27040760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:369-684
               
               
               Cow position:chr29:7840396-7840715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 5

               
               
               Conread position:385-642
               
               
               Cow position:chr29:2689519-2689776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:471-677
               
               
               Cow position:chr29:13853318-13853112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:471-733
               
               
               Cow position:chr29:21427354-21427077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:471-751
               
               
               Cow position:chr29:34609241-34608958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:488-756
               
               
               Cow position:chr29:2368179-2367900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:538-728
               
               
               Cow position:chr29:11855368-11855567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 69

               
               
               Conread position:271-543
               
               
               Cow position:chr3:24359676-24359953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:271-684
               
               
               Cow position:chr3:32146668-32146254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:286-592
               
               
               Cow position:chr3:47273538-47273227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 208

               
               
               Conread position:289-632
               
               
               Cow position:chr3:30313991-30314337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:289-641
               
               
               Cow position:chr3:36882481-36882124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-641
               
               
               Cow position:chr3:48061391-48061040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 174

               
               
               Conread position:289-642
               
               
               Cow position:chr3:2711527-2711170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr3:10239083-10239439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr3:43040259-43039902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:289-642
               
               
               Cow position:chr3:78027980-78027620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-684
               
               
               Cow position:chr3:56650834-56650432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 207

               
               
               Conread position:289-712
               
               
               Cow position:chr3:18810935-18811372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 163

               
               
               Conread position:289-712
               
               
               Cow position:chr3:38865839-38866266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-712
               
               
               Cow position:chr3:57485291-57484859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:291-728
               
               
               Cow position:chr3:2909646-2909206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:296-628
               
               
               Cow position:chr3:14440289-14439952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 317

               
               
               Conread position:296-666
               
               
               Cow position:chr3:19938351-19938730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 306

               
               
               Conread position:296-673
               
               
               Cow position:chr3:50128426-50128056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:296-684
               
               
               Cow position:chr3:4285326-4285722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr3:15989590-15989199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-684
               
               
               Cow position:chr3:17829209-17828813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 280

               
               
               Conread position:296-684
               
               
               Cow position:chr3:19878102-19878499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:296-684
               
               
               Cow position:chr3:22335337-22335729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 163

               
               
               Conread position:296-684
               
               
               Cow position:chr3:37968522-37968915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 250

               
               
               Conread position:296-684
               
               
               Cow position:chr3:40340524-40340127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 281

               
               
               Conread position:296-684
               
               
               Cow position:chr3:49614534-49614141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:296-684
               
               
               Cow position:chr3:57856174-57856573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-684
               
               
               Cow position:chr3:64028645-64028249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 280

               
               
               Conread position:296-684
               
               
               Cow position:chr3:66891516-66891125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-684
               
               
               Cow position:chr3:72704635-72705034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-728
               
               
               Cow position:chr3:3522452-3522902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-728
               
               
               Cow position:chr3:63005700-63005260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:297-516
               
               
               Cow position:chr3:80871177-80871395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:297-756
               
               
               Cow position:chr3:58208651-58208175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 185

               
               
               Conread position:298-642
               
               
               Cow position:chr3:21183238-21182894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:301-592
               
               
               Cow position:chr3:36117110-36117403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 173

               
               
               Conread position:301-642
               
               
               Cow position:chr3:5882984-5883331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-684
               
               
               Cow position:chr3:64017918-64017529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:301-729
               
               
               Cow position:chr3:36126848-36127278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:301-756
               
               
               Cow position:chr3:3805828-3806261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:306-684
               
               
               Cow position:chr3:40822837-40823223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:309-728
               
               
               Cow position:chr3:32842969-32842542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:310-731
               
               
               Cow position:chr3:19692625-19692203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:311-681
               
               
               Cow position:chr3:83295785-83295418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:316-684
               
               
               Cow position:chr3:49140942-49140575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:316-728
               
               
               Cow position:chr3:42630458-42630903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 278

               
               
               Conread position:320-642
               
               
               Cow position:chr3:56340956-56340633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:321-552
               
               
               Cow position:chr3:83700672-83700445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:321-585
               
               
               Cow position:chr3:30929144-30929414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:321-640
               
               
               Cow position:chr3:49677227-49677548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:321-665
               
               
               Cow position:chr3:47082181-47081842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:321-684
               
               
               Cow position:chr3:2916934-2917297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:321-684
               
               
               Cow position:chr3:45032206-45032578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 289

               
               
               Conread position:321-712
               
               
               Cow position:chr3:59860830-59861234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:321-730
               
               
               Cow position:chr3:23291939-23291516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:321-732
               
               
               Cow position:chr3:64358695-64358275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:321-733
               
               
               Cow position:chr3:3979862-3980283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:321-751
               
               
               Cow position:chr3:18729678-18729223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:321-756
               
               
               Cow position:chr3:17936599-17936142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):53, 138

               
               
               Conread position:321-756
               
               
               Cow position:chr3:60387840-60388297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:322-750
               
               
               Cow position:chr3:16072636-16073057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:322-756
               
               
               Cow position:chr3:4739431-4739016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):214, 51

               
               
               Conread position:323-756
               
               
               Cow position:chr3:45775599-45775166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:324-582
               
               
               Cow position:chr3:24592142-24591880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:324-668
               
               
               Cow position:chr3:49309197-49308865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:324-733
               
               
               Cow position:chr3:36099240-36098812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:328-642
               
               
               Cow position:chr3:46861827-46861507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 273

               
               
               Conread position:328-684
               
               
               Cow position:chr3:41212266-41211901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 285

               
               
               Conread position:328-728
               
               
               Cow position:chr3:15177797-15178198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:328-756
               
               
               Cow position:chr3:19723106-19722699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:328-756
               
               
               Cow position:chr3:46678441-46677992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 285

               
               
               Conread position:329-685
               
               
               Cow position:chr3:52865272-52864912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:330-641
               
               
               Cow position:chr3:18542936-18542617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):57, 165

               
               
               Conread position:337-730
               
               
               Cow position:chr3:69932879-69933284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:341-681
               
               
               Cow position:chr3:50208853-50209195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:343-728
               
               
               Cow position:chr3:5830136-5829740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:345-638
               
               
               Cow position:chr3:3054107-3054396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:346-592
               
               
               Cow position:chr3:66618676-66618925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 147

               
               
               Conread position:346-673
               
               
               Cow position:chr3:472045-472357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):189, 110

               
               
               Conread position:346-673
               
               
               Cow position:chr3:66119151-66119480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:346-733
               
               
               Cow position:chr3:2633421-2633818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:346-733
               
               
               Cow position:chr3:2653611-2653999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:346-733
               
               
               Cow position:chr3:70084147-70083752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:346-756
               
               
               Cow position:chr3:207670-207243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:346-756
               
               
               Cow position:chr3:31354762-31354342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:347-626
               
               
               Cow position:chr3:5047693-5047409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:348-575
               
               
               Cow position:chr3:48231482-48231258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:348-628
               
               
               Cow position:chr3:19801919-19802200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:348-740
               
               
               Cow position:chr3:39326183-39326588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:351-644
               
               
               Cow position:chr3:6684947-6685254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:353-730
               
               
               Cow position:chr3:34396552-34396169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:356-756
               
               
               Cow position:chr3:594092-594497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:359-678
               
               
               Cow position:chr3:32618405-32618087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:361-684
               
               
               Cow position:chr3:49545668-49545341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:361-756
               
               
               Cow position:chr3:64650138-64650547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:362-756
               
               
               Cow position:chr3:53410436-53410839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:364-666
               
               
               Cow position:chr3:77474272-77474576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:364-728
               
               
               Cow position:chr3:31898461-31898088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:364-728
               
               
               Cow position:chr3:42580457-42580077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:364-733
               
               
               Cow position:chr3:9716319-9716707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 180

               
               
               Conread position:374-712
               
               
               Cow position:chr3:19757440-19757091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 117

               
               
               Conread position:379-703
               
               
               Cow position:chr3:14588213-14588544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):114, 90

               
               
               Conread position:385-677
               
               
               Cow position:chr3:47179673-47179374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 226

               
               
               Conread position:419-751
               
               
               Cow position:chr3:12681118-12680775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 158

               
               
               Conread position:422-730
               
               
               Cow position:chr3:50914878-50915195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:423-752
               
               
               Cow position:chr3:26949085-26949427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:473-681
               
               
               Cow position:chr3:80871529-80871729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:543-756
               
               
               Cow position:chr3:21305473-21305257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:546-735
               
               
               Cow position:chr3:42445372-42445179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:551-751
               
               
               Cow position:chr3:17775800-17776009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:1-129
               
               
               Cow position:chr4:17531512-17531384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:1-129
               
               
               Cow position:chr4:40825096-40824966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:289-567
               
               
               Cow position:chr4:41118362-41118649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-582
               
               
               Cow position:chr4:3357959-3358261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:289-584
               
               
               Cow position:chr4:33074148-33073846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-598
               
               
               Cow position:chr4:46713097-46712789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 168

               
               
               Conread position:289-642
               
               
               Cow position:chr4:29532479-29532119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):20, 314

               
               
               Conread position:289-642
               
               
               Cow position:chr4:33493046-33493407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 258

               
               
               Conread position:289-642
               
               
               Cow position:chr4:41330675-41331036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-642
               
               
               Cow position:chr4:43320401-43320041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr4:45050060-45049703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:289-712
               
               
               Cow position:chr4:6491111-6490675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 316

               
               
               Conread position:289-712
               
               
               Cow position:chr4:43880346-43880782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):13, 311

               
               
               Conread position:289-730
               
               
               Cow position:chr4:48025641-48026092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:291-756
               
               
               Cow position:chr4:28830273-28830755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:294-756
               
               
               Cow position:chr4:51044638-51044170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:296-567
               
               
               Cow position:chr4:41954037-41954314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-662
               
               
               Cow position:chr4:9311480-9311854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:296-666
               
               
               Cow position:chr4:5879428-5879792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:296-678
               
               
               Cow position:chr4:528237-528628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:296-684
               
               
               Cow position:chr4:157771-158156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr4:602239-602635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 280

               
               
               Conread position:296-684
               
               
               Cow position:chr4:23114933-23114535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 318

               
               
               Conread position:296-684
               
               
               Cow position:chr4:65224292-65223893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-756
               
               
               Cow position:chr4:101686-101206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):26, 470

               
               
               Conread position:297-756
               
               
               Cow position:chr4:11383673-11384131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:299-751
               
               
               Cow position:chr4:3829745-3830195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:301-641
               
               
               Cow position:chr4:13491821-13492171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:301-642
               
               
               Cow position:chr4:44724334-44724678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:301-684
               
               
               Cow position:chr4:6269373-6268987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:301-712
               
               
               Cow position:chr4:18516144-18516569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:303-619
               
               
               Cow position:chr4:17382964-17382650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:305-669
               
               
               Cow position:chr4:60630995-60630631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:308-561
               
               
               Cow position:chr4:57978671-57978931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 187

               
               
               Conread position:311-669
               
               
               Cow position:chr4:60673166-60673522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:312-752
               
               
               Cow position:chr4:31668582-31669033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:316-665
               
               
               Cow position:chr4:6449620-6449271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:316-728
               
               
               Cow position:chr4:39272655-39272247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:316-756
               
               
               Cow position:chr4:11394057-11393610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):220, 5

               
               
               Conread position:321-642
               
               
               Cow position:chr4:3960865-3961187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:321-644
               
               
               Cow position:chr4:4905424-4905751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:321-666
               
               
               Cow position:chr4:13547293-13547649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 296

               
               
               Conread position:321-668
               
               
               Cow position:chr4:54190146-54190478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:321-684
               
               
               Cow position:chr4:3125050-3125422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):65, 292

               
               
               Conread position:321-712
               
               
               Cow position:chr4:1050352-1049947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 173

               
               
               Conread position:321-730
               
               
               Cow position:chr4:355185-355605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:321-730
               
               
               Cow position:chr4:24445930-24445506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:321-744
               
               
               Cow position:chr4:47764901-47764469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):65, 292

               
               
               Conread position:323-514
               
               
               Cow position:chr4:15263680-15263489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:328-744
               
               
               Cow position:chr4:1931344-1930922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 272

               
               
               Conread position:329-728
               
               
               Cow position:chr4:6215268-6214859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:331-751
               
               
               Cow position:chr4:40824970-40824529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 276

               
               
               Conread position:333-590
               
               
               Cow position:chr4:41427909-41428166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:338-730
               
               
               Cow position:chr4:36895660-36896069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 262

               
               
               Conread position:342-642
               
               
               Cow position:chr4:12241930-12241624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:345-756
               
               
               Cow position:chr4:22471503-22471903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:346-728
               
               
               Cow position:chr4:47718296-47717913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:346-756
               
               
               Cow position:chr4:66925301-66925726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:347-756
               
               
               Cow position:chr4:21338684-21338273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:348-728
               
               
               Cow position:chr4:8598836-8598455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:352-584
               
               
               Cow position:chr4:11617738-11617983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:353-673
               
               
               Cow position:chr4:16359199-16359513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:359-641
               
               
               Cow position:chr4:17926947-17926659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:393-743
               
               
               Cow position:chr4:1497410-1497046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:409-756
               
               
               Cow position:chr4:4175807-4176156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:465-756
               
               
               Cow position:chr4:496521-496227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:471-675
               
               
               Cow position:chr4:32211591-32211799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:472-728
               
               
               Cow position:chr4:10408203-10408474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:478-666
               
               
               Cow position:chr4:66179554-66179367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:507-750
               
               
               Cow position:chr4:24198733-24198481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:509-750
               
               
               Cow position:chr4:969579-969323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:545-756
               
               
               Cow position:chr4:54157526-54157737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 142

               
               
               Conread position:1-128
               
               
               Cow position:chr5:56858454-56858324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr5:57366746-57366620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:24-129
               
               
               Cow position:chr5:62162478-62162373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-642
               
               
               Cow position:chr5:2430815-2430443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:279-756
               
               
               Cow position:chr5:32945201-32945695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:331
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:286-752
               
               
               Cow position:chr5:55627331-55627805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:320
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:289-642
               
               
               Cow position:chr5:54793288-54792928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-730
               
               
               Cow position:chr5:2913781-2914240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:291-693
               
               
               Cow position:chr5:12682168-12681773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:296-578
               
               
               Cow position:chr5:10443865-10443576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 216

               
               
               Conread position:296-582
               
               
               Cow position:chr5:18663584-18663877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-636
               
               
               Cow position:chr5:10776907-10776569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:296-653
               
               
               Cow position:chr5:37755802-37755436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-666
               
               
               Cow position:chr5:27909931-27909555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 280

               
               
               Conread position:296-675
               
               
               Cow position:chr5:59144116-59144508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 321

               
               
               Conread position:296-684
               
               
               Cow position:chr5:2530613-2531006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 189

               
               
               Conread position:296-684
               
               
               Cow position:chr5:3963816-3964206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 163

               
               
               Conread position:296-684
               
               
               Cow position:chr5:4019861-4019463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 318

               
               
               Conread position:296-684
               
               
               Cow position:chr5:10844536-10844139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 109

               
               
               Conread position:296-684
               
               
               Cow position:chr5:14379505-14379898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-684
               
               
               Cow position:chr5:24576251-24576649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 318

               
               
               Conread position:296-684
               
               
               Cow position:chr5:26079881-26079483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 305

               
               
               Conread position:296-684
               
               
               Cow position:chr5:32771819-32772217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):26, 318

               
               
               Conread position:296-684
               
               
               Cow position:chr5:45182755-45182374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:296-684
               
               
               Cow position:chr5:48468935-48468541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:296-684
               
               
               Cow position:chr5:58195339-58195737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:296-684
               
               
               Cow position:chr5:59059955-59060356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 286

               
               
               Conread position:296-684
               
               
               Cow position:chr5:59481588-59481990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 228

               
               
               Conread position:296-685
               
               
               Cow position:chr5:31705914-31706311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 133

               
               
               Conread position:297-728
               
               
               Cow position:chr5:27488370-27488807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 159

               
               
               Conread position:301-641
               
               
               Cow position:chr5:4068333-4068679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-642
               
               
               Cow position:chr5:6158850-6158505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:301-665
               
               
               Cow position:chr5:46775435-46775803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:301-712
               
               
               Cow position:chr5:7273209-7273619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:304-586
               
               
               Cow position:chr5:46644057-46644343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:304-661
               
               
               Cow position:chr5:34167428-34167770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:305-642
               
               
               Cow position:chr5:57483195-57482857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:305-756
               
               
               Cow position:chr5:51162265-51162731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:306-733
               
               
               Cow position:chr5:51771990-51771553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:316-599
               
               
               Cow position:chr5:25001558-25001274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:316-632
               
               
               Cow position:chr5:46631053-46630745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:316-728
               
               
               Cow position:chr5:27683387-27682982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:321-558
               
               
               Cow position:chr5:23688107-23687864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:321-564
               
               
               Cow position:chr5:42504122-42504367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:321-582
               
               
               Cow position:chr5:23960744-23960478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:321-641
               
               
               Cow position:chr5:59282126-59282452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:321-642
               
               
               Cow position:chr5:37731709-37732035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):63, 172

               
               
               Conread position:321-642
               
               
               Cow position:chr5:46739218-46738895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:321-663
               
               
               Cow position:chr5:24109670-24109325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):60, 166

               
               
               Conread position:321-684
               
               
               Cow position:chr5:35299427-35299799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:321-703
               
               
               Cow position:chr5:46663369-46663758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:321-728
               
               
               Cow position:chr5:30088343-30087934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:321-728
               
               
               Cow position:chr5:57366635-57366234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 59

               
               
               Conread position:322-605
               
               
               Cow position:chr5:54619838-54620121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:322-628
               
               
               Cow position:chr5:10918162-10918473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 171

               
               
               Conread position:322-666
               
               
               Cow position:chr5:23756212-23755877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:323-726
               
               
               Cow position:chr5:49128624-49129015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:323-750
               
               
               Cow position:chr5:49101010-49101439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 59

               
               
               Conread position:324-756
               
               
               Cow position:chr5:56858335-56857882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:325-756
               
               
               Cow position:chr5:58056367-58055938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:328-643
               
               
               Cow position:chr5:6519272-6519577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:328-675
               
               
               Cow position:chr5:47831722-47831378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:328-728
               
               
               Cow position:chr5:23227633-23228043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:330-641
               
               
               Cow position:chr5:24098019-24098338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:330-642
               
               
               Cow position:chr5:416347-416033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 163

               
               
               Conread position:330-642
               
               
               Cow position:chr5:3504869-3504557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:330-644
               
               
               Cow position:chr5:34695957-34696276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):52, 163

               
               
               Conread position:331-644
               
               
               Cow position:chr5:4384606-4384918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:333-750
               
               
               Cow position:chr5:28570080-28570504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:334-577
               
               
               Cow position:chr5:41963552-41963305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:334-668
               
               
               Cow position:chr5:76124171-76123834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:334-728
               
               
               Cow position:chr5:49594077-49593669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:345-728
               
               
               Cow position:chr5:61273777-61273394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:345-756
               
               
               Cow position:chr5:32674340-32673922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:346-666
               
               
               Cow position:chr5:9687018-9686698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:346-670
               
               
               Cow position:chr5:52804723-52805054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:346-728
               
               
               Cow position:chr5:24329683-24330078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 203

               
               
               Conread position:346-740
               
               
               Cow position:chr5:34202341-34202740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:346-751
               
               
               Cow position:chr5:61020448-61020041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:346-756
               
               
               Cow position:chr5:49181675-49182090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:347-637
               
               
               Cow position:chr5:68472172-68471878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:349-666
               
               
               Cow position:chr5:39165406-39165082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 226

               
               
               Conread position:350-666
               
               
               Cow position:chr5:26769206-26769526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 167

               
               
               Conread position:350-728
               
               
               Cow position:chr5:45699674-45700071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:350-756
               
               
               Cow position:chr5:28030886-28031298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:351-730
               
               
               Cow position:chr5:18665355-18665751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 262

               
               
               Conread position:353-727
               
               
               Cow position:chr5:26090433-26090044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:356-684
               
               
               Cow position:chr5:64782618-64782283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:364-728
               
               
               Cow position:chr5:32733835-32733465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:365-641
               
               
               Cow position:chr5:12185075-12185350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:374-728
               
               
               Cow position:chr5:29454443-29454083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:375-673
               
               
               Cow position:chr5:41551503-41551203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 81

               
               
               Conread position:378-666
               
               
               Cow position:chr5:29008784-29009075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:384-660
               
               
               Cow position:chr5:27569579-27569860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:390-622
               
               
               Cow position:chr5:31102155-31101926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:392-756
               
               
               Cow position:chr5:53627322-53626944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 151

               
               
               Conread position:408-722
               
               
               Cow position:chr5:29123347-29123020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):24, 188

               
               
               Conread position:416-663
               
               
               Cow position:chr5:6179995-6180236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:461-684
               
               
               Cow position:chr5:29042018-29042247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:461-751
               
               
               Cow position:chr5:28022674-28022971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:1-129
               
               
               Cow position:chr6:20495907-20496033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:16-128
               
               
               Cow position:chr6:525683-525797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:269-642
               
               
               Cow position:chr6:3890035-3889648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 226

               
               
               Conread position:271-675
               
               
               Cow position:chr6:27169032-27169445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:271-756
               
               
               Cow position:chr6:2374166-2374663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:326
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:289-641
               
               
               Cow position:chr6:8201204-8201563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-641
               
               
               Cow position:chr6:15281071-15280711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-642
               
               
               Cow position:chr6:913103-913460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr6:36525517-36525874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:289-642
               
               
               Cow position:chr6:55544855-55544495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 314

               
               
               Conread position:289-642
               
               
               Cow position:chr6:65880332-65880698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 212

               
               
               Conread position:289-684
               
               
               Cow position:chr6:21686374-21686765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:289-684
               
               
               Cow position:chr6:26671393-26670986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:289-712
               
               
               Cow position:chr6:3278478-3278041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:289-712
               
               
               Cow position:chr6:39437115-39437550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-730
               
               
               Cow position:chr6:1823774-1823320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:300
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-752
               
               
               Cow position:chr6:5951763-5951281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:320
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:296-582
               
               
               Cow position:chr6:6935646-6935353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-582
               
               
               Cow position:chr6:41757505-41757214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:296-666
               
               
               Cow position:chr6:28492032-28491656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:296-684
               
               
               Cow position:chr6:2554190-2554585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:296-684
               
               
               Cow position:chr6:7141986-7141594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:296-684
               
               
               Cow position:chr6:13978021-13978398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 93

               
               
               Conread position:296-684
               
               
               Cow position:chr6:34126830-34127226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-684
               
               
               Cow position:chr6:39907635-39908027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-684
               
               
               Cow position:chr6:43617194-43617594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 320

               
               
               Conread position:296-684
               
               
               Cow position:chr6:45671748-45672142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:296-684
               
               
               Cow position:chr6:68026260-68026659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 284

               
               
               Conread position:296-730
               
               
               Cow position:chr6:332000-331537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-730
               
               
               Cow position:chr6:57870525-57870072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-730
               
               
               Cow position:chr6:65822653-65822195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 321

               
               
               Conread position:296-741
               
               
               Cow position:chr6:13103538-13104000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:297-663
               
               
               Cow position:chr6:59478731-59478362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:301-583
               
               
               Cow position:chr6:52032-51745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:301-642
               
               
               Cow position:chr6:15141685-15141344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:305-572
               
               
               Cow position:chr6:65900420-65900148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:305-684
               
               
               Cow position:chr6:17598794-17598402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 193

               
               
               Conread position:307-584
               
               
               Cow position:chr6:25357169-25357446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:312-728
               
               
               Cow position:chr6:2885742-2886140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):224, 74

               
               
               Conread position:316-722
               
               
               Cow position:chr6:52803923-52804331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 5

               
               
               Conread position:317-625
               
               
               Cow position:chr6:17045564-17045876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:317-712
               
               
               Cow position:chr6:29310995-29311400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:318-676
               
               
               Cow position:chr6:40274762-40275128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:319-573
               
               
               Cow position:chr6:66194469-66194216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:320-592
               
               
               Cow position:chr6:24238556-24238830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:320-642
               
               
               Cow position:chr6:65908938-65909258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:320-756
               
               
               Cow position:chr6:1384337-1383890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 172

               
               
               Conread position:320-756
               
               
               Cow position:chr6:6566117-6566568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 436

               
               
               Conread position:321-638
               
               
               Cow position:chr6:21971183-21971501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:321-641
               
               
               Cow position:chr6:65841095-65841426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:321-642
               
               
               Cow position:chr6:12093347-12093031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:321-642
               
               
               Cow position:chr6:20561603-20561278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):65, 172

               
               
               Conread position:321-685
               
               
               Cow position:chr6:44151036-44150679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):212, 65

               
               
               Conread position:321-703
               
               
               Cow position:chr6:3488886-3488499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):66, 141

               
               
               Conread position:321-730
               
               
               Cow position:chr6:50497944-50497527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:321-751
               
               
               Cow position:chr6:6619892-6619481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:321-756
               
               
               Cow position:chr6:35433051-35433501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:322-740
               
               
               Cow position:chr6:60384504-60384927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:323-528
               
               
               Cow position:chr6:17100395-17100188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 158

               
               
               Conread position:323-644
               
               
               Cow position:chr6:51190057-51190373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:323-728
               
               
               Cow position:chr6:42360157-42359751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:328-562
               
               
               Cow position:chr6:28106251-28106016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:328-728
               
               
               Cow position:chr6:10054138-10054542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:330-665
               
               
               Cow position:chr6:30478614-30478948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:330-673
               
               
               Cow position:chr6:38231794-38232142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):50, 155

               
               
               Conread position:330-728
               
               
               Cow position:chr6:6476935-6476525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:334-712
               
               
               Cow position:chr6:27530479-27530094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:339-756
               
               
               Cow position:chr6:35421036-35420632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:341-712
               
               
               Cow position:chr6:40314439-40314811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):191, 122

               
               
               Conread position:345-733
               
               
               Cow position:chr6:10559106-10558726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:346-728
               
               
               Cow position:chr6:19453464-19453852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:346-728
               
               
               Cow position:chr6:59919743-59919349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:346-728
               
               
               Cow position:chr6:68362784-68362390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:347-645
               
               
               Cow position:chr6:50138160-50138451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:351-730
               
               
               Cow position:chr6:1405696-1405307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:352-707
               
               
               Cow position:chr6:65927482-65927842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:353-642
               
               
               Cow position:chr6:701490-701788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:353-642
               
               
               Cow position:chr6:47043892-47043600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:353-712
               
               
               Cow position:chr6:30275643-30275269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:353-743
               
               
               Cow position:chr6:42564485-42564888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:356-642
               
               
               Cow position:chr6:28274529-28274815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:356-666
               
               
               Cow position:chr6:63198595-63198286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:356-730
               
               
               Cow position:chr6:27468799-27469183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:357-642
               
               
               Cow position:chr6:64714658-64714947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:362-730
               
               
               Cow position:chr6:11353285-11353673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 121

               
               
               Conread position:363-684
               
               
               Cow position:chr6:58409360-58409035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:364-666
               
               
               Cow position:chr6:11278144-11277843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:364-756
               
               
               Cow position:chr6:525809-526201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:365-572
               
               
               Cow position:chr6:66231365-66231575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 126

               
               
               Conread position:371-752
               
               
               Cow position:chr6:8761744-8761345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:376-728
               
               
               Cow position:chr6:34203075-34203436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:378-728
               
               
               Cow position:chr6:28474274-28474631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 140

               
               
               Conread position:378-733
               
               
               Cow position:chr6:42926945-42927319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 170

               
               
               Conread position:381-663
               
               
               Cow position:chr6:6542315-6542590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 156

               
               
               Conread position:412-647
               
               
               Cow position:chr6:12095751-12095518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:413-751
               
               
               Cow position:chr6:20496310-20496652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:421-716
               
               
               Cow position:chr6:31569319-31569018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:471-728
               
               
               Cow position:chr6:37115799-37116068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:482-756
               
               
               Cow position:chr6:59741379-59741087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:538-756
               
               
               Cow position:chr6:15476014-15476240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:549-756
               
               
               Cow position:chr6:10630205-10630423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1-112
               
               
               Cow position:chr7:25686709-25686599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:1-129
               
               
               Cow position:chr7:67653429-67653559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-130
               
               
               Cow position:chr7:65340198-65340072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:287-641
               
               
               Cow position:chr7:21235451-21235090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:289-579
               
               
               Cow position:chr7:1736614-1736319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:289-584
               
               
               Cow position:chr7:13538166-13537863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-592
               
               
               Cow position:chr7:38396788-38397100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 207

               
               
               Conread position:289-642
               
               
               Cow position:chr7:24808907-24808546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-684
               
               
               Cow position:chr7:39791298-39791707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):13, 319

               
               
               Conread position:289-712
               
               
               Cow position:chr7:21984961-21985398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-712
               
               
               Cow position:chr7:67798418-67798849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:289-752
               
               
               Cow position:chr7:21128083-21127612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:319
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-752
               
               
               Cow position:chr7:64242375-64241899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-756
               
               
               Cow position:chr7:14140031-14139548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:293-728
               
               
               Cow position:chr7:27125729-27126182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:293-756
               
               
               Cow position:chr7:58378622-58378148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:296-578
               
               
               Cow position:chr7:6720116-6720403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 198

               
               
               Conread position:296-684
               
               
               Cow position:chr7:3235114-3234716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:296-684
               
               
               Cow position:chr7:6649085-6648688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 314

               
               
               Conread position:296-684
               
               
               Cow position:chr7:25439105-25439487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 164

               
               
               Conread position:296-684
               
               
               Cow position:chr7:27102542-27102147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:296-684
               
               
               Cow position:chr7:47374565-47374964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-684
               
               
               Cow position:chr7:61558782-61559180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 318

               
               
               Conread position:296-703
               
               
               Cow position:chr7:17302-16881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):92, 306

               
               
               Conread position:296-728
               
               
               Cow position:chr7:27531290-27530847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 146

               
               
               Conread position:296-730
               
               
               Cow position:chr7:6643304-6642857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):6, 294

               
               
               Conread position:296-730
               
               
               Cow position:chr7:11467158-11466718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:298-592
               
               
               Cow position:chr7:28635228-28635516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:299-756
               
               
               Cow position:chr7:52120507-52120032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:301-642
               
               
               Cow position:chr7:54602424-54602772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:301-687
               
               
               Cow position:chr7:27786207-27786594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 192

               
               
               Conread position:301-756
               
               
               Cow position:chr7:34485489-34485959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:302-666
               
               
               Cow position:chr7:3154361-3154729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:303-631
               
               
               Cow position:chr7:18962521-18962842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:303-728
               
               
               Cow position:chr7:68084396-68084807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:306-704
               
               
               Cow position:chr7:20307199-20306800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:312-756
               
               
               Cow position:chr7:65497195-65496752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:321-451
               
               
               Cow position:chr7:67653544-67653673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:321-537
               
               
               Cow position:chr7:31864458-31864669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:321-581
               
               
               Cow position:chr7:20429406-20429152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 162

               
               
               Conread position:321-592
               
               
               Cow position:chr7:34148706-34148980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 121

               
               
               Conread position:321-719
               
               
               Cow position:chr7:41876882-41876492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:321-722
               
               
               Cow position:chr7:49290196-49290609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:321-728
               
               
               Cow position:chr7:750523-750949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 193

               
               
               Conread position:321-728
               
               
               Cow position:chr7:60857752-60857351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:321-728
               
               
               Cow position:chr7:63020452-63020872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):73, 136

               
               
               Conread position:321-752
               
               
               Cow position:chr7:46902478-46902031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:322-756
               
               
               Cow position:chr7:26883741-26884179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 124

               
               
               Conread position:323-666
               
               
               Cow position:chr7:3301556-3301207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 23

               
               
               Conread position:323-756
               
               
               Cow position:chr7:7297273-7296826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:328-577
               
               
               Cow position:chr7:29371151-29370904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:328-704
               
               
               Cow position:chr7:25686603-25686232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:330-531
               
               
               Cow position:chr7:30156684-30156479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:330-642
               
               
               Cow position:chr7:55538312-55537996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:330-666
               
               
               Cow position:chr7:35287958-35287613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:331-622
               
               
               Cow position:chr7:522234-521943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:334-660
               
               
               Cow position:chr7:26890416-26890742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:334-661
               
               
               Cow position:chr7:39109100-39108781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:344-750
               
               
               Cow position:chr7:59027641-59028044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:344-751
               
               
               Cow position:chr7:51084240-51084654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:345-530
               
               
               Cow position:chr7:47050043-47050229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:345-644
               
               
               Cow position:chr7:51013595-51013892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:346-632
               
               
               Cow position:chr7:35297974-35297687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:346-666
               
               
               Cow position:chr7:48633029-48633343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:346-728
               
               
               Cow position:chr7:36084958-36085354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:346-728
               
               
               Cow position:chr7:41870302-41869927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:351-727
               
               
               Cow position:chr7:62680030-62679628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:353-642
               
               
               Cow position:chr7:20294499-20294793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:359-653
               
               
               Cow position:chr7:68858458-68858160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:359-666
               
               
               Cow position:chr7:29469498-29469811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:361-728
               
               
               Cow position:chr7:59136067-59136443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 275

               
               
               Conread position:362-592
               
               
               Cow position:chr7:68076178-68076406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:362-684
               
               
               Cow position:chr7:37416658-37416985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 209

               
               
               Conread position:363-727
               
               
               Cow position:chr7:54515470-54515102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:367-747
               
               
               Cow position:chr7:65340044-65339664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 207

               
               
               Conread position:368-727
               
               
               Cow position:chr7:102953-102584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:374-756
               
               
               Cow position:chr7:24055943-24056332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:375-728
               
               
               Cow position:chr7:21976084-21975718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:385-641
               
               
               Cow position:chr7:51911690-51911432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 107

               
               
               Conread position:387-712
               
               
               Cow position:chr7:45949484-45949151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:409-756
               
               
               Cow position:chr7:30119853-30119490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:411-750
               
               
               Cow position:chr7:67811806-67812165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:412-642
               
               
               Cow position:chr7:11446245-11446477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:429-728
               
               
               Cow position:chr7:993939-994253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:451-756
               
               
               Cow position:chr7:23835850-23836171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:462-733
               
               
               Cow position:chr7:68436305-68436021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:464-671
               
               
               Cow position:chr7:67426161-67426371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:467-756
               
               
               Cow position:chr7:6489564-6489263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:487-728
               
               
               Cow position:chr7:61349798-61349565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:488-642
               
               
               Cow position:chr7:33406477-33406322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:493-728
               
               
               Cow position:chr7:1405659-1405418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:523-756
               
               
               Cow position:chr7:3729780-3730020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:287-684
               
               
               Cow position:chr8:37931045-37931449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):99, 314

               
               
               Conread position:289-642
               
               
               Cow position:chr8:25522149-25522507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:289-642
               
               
               Cow position:chr8:32319798-32319437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr8:38390121-38390476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:289-642
               
               
               Cow position:chr8:59263143-59262785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:289-644
               
               
               Cow position:chr8:60059953-60060314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-665
               
               
               Cow position:chr8:8402450-8402068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-712
               
               
               Cow position:chr8:45795993-45795557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:289-730
               
               
               Cow position:chr8:19328704-19329164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-752
               
               
               Cow position:chr8:23770389-23770871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:289-752
               
               
               Cow position:chr8:25407216-25407681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:293-712
               
               
               Cow position:chr8:50289390-50288964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:295-642
               
               
               Cow position:chr8:5015946-5016291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:296-620
               
               
               Cow position:chr8:6065960-6065636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-662
               
               
               Cow position:chr8:37657504-37657140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-666
               
               
               Cow position:chr8:8518817-8518445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-666
               
               
               Cow position:chr8:26007006-26006632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 192

               
               
               Conread position:296-675
               
               
               Cow position:chr8:1318796-1319189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr8:9274777-9275174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 281

               
               
               Conread position:296-684
               
               
               Cow position:chr8:12504758-12505152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:296-684
               
               
               Cow position:chr8:32439685-32439289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 318

               
               
               Conread position:296-684
               
               
               Cow position:chr8:47070052-47069652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 320

               
               
               Conread position:296-712
               
               
               Cow position:chr8:22572538-22572108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-730
               
               
               Cow position:chr8:46945372-46944921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 198

               
               
               Conread position:296-742
               
               
               Cow position:chr8:9735006-9735458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):91, 317

               
               
               Conread position:296-750
               
               
               Cow position:chr8:2885508-2885973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-756
               
               
               Cow position:chr8:10748141-10748615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:311
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:301-638
               
               
               Cow position:chr8:19174003-19173665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:301-642
               
               
               Cow position:chr8:4686157-4686501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-642
               
               
               Cow position:chr8:33588140-33588487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-752
               
               
               Cow position:chr8:19050249-19050712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:304-567
               
               
               Cow position:chr8:48370793-48371068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 195

               
               
               Conread position:304-641
               
               
               Cow position:chr8:17310790-17311126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:305-644
               
               
               Cow position:chr8:47662560-47662216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):17, 188

               
               
               Conread position:307-704
               
               
               Cow position:chr8:44713541-44713129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:308-560
               
               
               Cow position:chr8:25777105-25776848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 185

               
               
               Conread position:308-642
               
               
               Cow position:chr8:44244802-44244466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:308-666
               
               
               Cow position:chr8:8910005-8910354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:308-730
               
               
               Cow position:chr8:29441058-29440623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 186

               
               
               Conread position:315-742
               
               
               Cow position:chr8:11821091-11821531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):64, 367

               
               
               Conread position:315-744
               
               
               Cow position:chr8:8904718-8904303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):141, 54

               
               
               Conread position:315-756
               
               
               Cow position:chr8:46222538-46222092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:320-677
               
               
               Cow position:chr8:44693090-44693438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:320-756
               
               
               Cow position:chr8:11801025-11801470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):148, 67

               
               
               Conread position:321-571
               
               
               Cow position:chr8:25542381-25542633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:321-622
               
               
               Cow position:chr8:42658677-42658375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 248

               
               
               Conread position:321-642
               
               
               Cow position:chr8:61198333-61198007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:321-660
               
               
               Cow position:chr8:9540706-9540363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:321-665
               
               
               Cow position:chr8:3857229-3856881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):58, 172

               
               
               Conread position:321-684
               
               
               Cow position:chr8:27578193-27578562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):65, 150

               
               
               Conread position:321-730
               
               
               Cow position:chr8:8656432-8656007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:321-733
               
               
               Cow position:chr8:36636759-36636331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 172

               
               
               Conread position:321-733
               
               
               Cow position:chr8:36637874-36637446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 172

               
               
               Conread position:321-756
               
               
               Cow position:chr8:27984018-27983555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 227

               
               
               Conread position:323-728
               
               
               Cow position:chr8:12664237-12663812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 257

               
               
               Conread position:324-684
               
               
               Cow position:chr8:42467190-42467533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:324-756
               
               
               Cow position:chr8:13735437-13735885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 170

               
               
               Conread position:325-578
               
               
               Cow position:chr8:13808115-13808367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:330-712
               
               
               Cow position:chr8:49214221-49214613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):48, 163

               
               
               Conread position:330-730
               
               
               Cow position:chr8:47074062-47074478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 151

               
               
               Conread position:333-684
               
               
               Cow position:chr8:32632219-32631871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):207, 124

               
               
               Conread position:334-728
               
               
               Cow position:chr8:32930303-32930717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:345-622
               
               
               Cow position:chr8:44077212-44076931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:345-666
               
               
               Cow position:chr8:47884834-47885168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 205

               
               
               Conread position:346-583
               
               
               Cow position:chr8:8596086-8595844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:346-666
               
               
               Cow position:chr8:45317312-45316993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 228

               
               
               Conread position:346-728
               
               
               Cow position:chr8:47670266-47670662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):31, 197

               
               
               Conread position:346-745
               
               
               Cow position:chr8:11757530-11757927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:346-756
               
               
               Cow position:chr8:45448260-45448683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:346-756
               
               
               Cow position:chr8:53427145-53427561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:347-571
               
               
               Cow position:chr8:46633580-46633356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:353-626
               
               
               Cow position:chr8:27924938-27925216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):24, 222

               
               
               Conread position:353-730
               
               
               Cow position:chr8:10743801-10743422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:354-684
               
               
               Cow position:chr8:38579481-38579137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:356-730
               
               
               Cow position:chr8:24916514-24916129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:358-666
               
               
               Cow position:chr8:1154487-1154173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 241

               
               
               Conread position:359-593
               
               
               Cow position:chr8:33429740-33429976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:385-730
               
               
               Cow position:chr8:39196367-39196007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):80, 106

               
               
               Conread position:411-756
               
               
               Cow position:chr8:24876839-24876471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 242

               
               
               Conread position:413-728
               
               
               Cow position:chr8:61035476-61035159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:440-756
               
               
               Cow position:chr8:23766483-23766158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 249

               
               
               Conread position:468-642
               
               
               Cow position:chr8:14929057-14928883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:488-751
               
               
               Cow position:chr8:15688197-15687922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:559-756
               
               
               Cow position:chr8:13808628-13808836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:1-119
               
               
               Cow position:chr9:12846194-12846074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-129
               
               
               Cow position:chr9:3938466-3938337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:1-131
               
               
               Cow position:chr9:3868178-3868047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:10-129
               
               
               Cow position:chr9:42904345-42904226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:16-129
               
               
               Cow position:chr9:35657323-35657438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:285-641
               
               
               Cow position:chr9:47001610-47001964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:289-641
               
               
               Cow position:chr9:18510323-18509963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chr9:9012509-9012871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):13, 215

               
               
               Conread position:289-642
               
               
               Cow position:chr9:37971806-37971446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:296-582
               
               
               Cow position:chr9:12401655-12401945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 167

               
               
               Conread position:296-582
               
               
               Cow position:chr9:33834863-33834572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 196

               
               
               Conread position:296-627
               
               
               Cow position:chr9:50788978-50789313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 167

               
               
               Conread position:296-642
               
               
               Cow position:chr9:2488555-2488210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr9:223116-222742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr9:4672017-4672414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr9:16267769-16268168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr9:17064978-17064591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:296-684
               
               
               Cow position:chr9:25483280-25483680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:296-684
               
               
               Cow position:chr9:45872760-45873155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 265

               
               
               Conread position:296-684
               
               
               Cow position:chr9:46626389-46625992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):90, 317

               
               
               Conread position:296-730
               
               
               Cow position:chr9:31194759-31194306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 319

               
               
               Conread position:296-730
               
               
               Cow position:chr9:34243190-34242737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-751
               
               
               Cow position:chr9:12846111-12845658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:296-756
               
               
               Cow position:chr9:164082-163611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:315
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):26, 175

               
               
               Conread position:298-642
               
               
               Cow position:chr9:6831126-6830789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:300-642
               
               
               Cow position:chr9:29629334-29628986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 194

               
               
               Conread position:301-638
               
               
               Cow position:chr9:59483250-59482915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:301-730
               
               
               Cow position:chr9:37163393-37162947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 192

               
               
               Conread position:301-730
               
               
               Cow position:chr9:59456185-59455739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-756
               
               
               Cow position:chr9:10321235-10321702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:303-732
               
               
               Cow position:chr9:3868084-3867645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 197

               
               
               Conread position:305-581
               
               
               Cow position:chr9:1996498-1996220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:307-751
               
               
               Cow position:chr9:3938367-3937914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:308-642
               
               
               Cow position:chr9:30671792-30672131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:310-730
               
               
               Cow position:chr9:59510025-59510472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 244

               
               
               Conread position:312-502
               
               
               Cow position:chr9:4027658-4027469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:316-722
               
               
               Cow position:chr9:4984211-4984621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:321-480
               
               
               Cow position:chr9:14961993-14961831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:321-483
               
               
               Cow position:chr9:42904241-42904076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:321-567
               
               
               Cow position:chr9:2493183-2492935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:321-584
               
               
               Cow position:chr9:3006837-3006572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:321-632
               
               
               Cow position:chr9:51183273-51182960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 171

               
               
               Conread position:321-642
               
               
               Cow position:chr9:7001989-7002314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:321-642
               
               
               Cow position:chr9:27034145-27034467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:321-642
               
               
               Cow position:chr9:28020982-28021308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-642
               
               
               Cow position:chr9:42568308-42568631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-666
               
               
               Cow position:chr9:781364-781019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:321-681
               
               
               Cow position:chr9:1076762-1076395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 139

               
               
               Conread position:321-684
               
               
               Cow position:chr9:27933529-27933901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 292

               
               
               Conread position:321-712
               
               
               Cow position:chr9:42309117-42309521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 173

               
               
               Conread position:321-712
               
               
               Cow position:chr9:59174722-59174318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-728
               
               
               Cow position:chr9:13219783-13220183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):215, 25

               
               
               Conread position:321-730
               
               
               Cow position:chr9:31806975-31807394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-750
               
               
               Cow position:chr9:2051895-2052330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:321-756
               
               
               Cow position:chr9:5003448-5003893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):68, 172

               
               
               Conread position:321-756
               
               
               Cow position:chr9:23409660-23410101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:321-756
               
               
               Cow position:chr9:35657423-35657844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:322-640
               
               
               Cow position:chr9:4531929-4532253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:323-684
               
               
               Cow position:chr9:2500857-2500489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:328-642
               
               
               Cow position:chr9:31776388-31776708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:328-730
               
               
               Cow position:chr9:2185399-2185822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:330-642
               
               
               Cow position:chr9:60278579-60278261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 215

               
               
               Conread position:330-665
               
               
               Cow position:chr9:16175212-16175553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:334-733
               
               
               Cow position:chr9:54360063-54360465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:345-729
               
               
               Cow position:chr9:64118316-64118687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):191, 37

               
               
               Conread position:345-756
               
               
               Cow position:chr9:9577069-9577488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:345-756
               
               
               Cow position:chr9:20310250-20309845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):191, 59

               
               
               Conread position:346-578
               
               
               Cow position:chr9:651631-651390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 202

               
               
               Conread position:346-617
               
               
               Cow position:chr9:3585763-3586035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 197

               
               
               Conread position:346-644
               
               
               Cow position:chr9:830092-829797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:346-644
               
               
               Cow position:chr9:831966-831671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:346-728
               
               
               Cow position:chr9:31020266-31020667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 200

               
               
               Conread position:350-666
               
               
               Cow position:chr9:15071979-15072303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:350-675
               
               
               Cow position:chr9:36723967-36724299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:353-641
               
               
               Cow position:chr9:59535566-59535858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:353-756
               
               
               Cow position:chr9:52570145-52570547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:355-684
               
               
               Cow position:chr9:28677444-28677782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:365-579
               
               
               Cow position:chr9:7062627-7062409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:369-684
               
               
               Cow position:chr9:34107234-34106913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):87, 235

               
               
               Conread position:369-701
               
               
               Cow position:chr9:3567370-3567024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:374-722
               
               
               Cow position:chr9:2202711-2203057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):162, 11

               
               
               Conread position:378-689
               
               
               Cow position:chr9:60651968-60651657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:385-660
               
               
               Cow position:chr9:1979448-1979720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 192

               
               
               Conread position:388-712
               
               
               Cow position:chr9:32968244-32968580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:390-642
               
               
               Cow position:chr9:29028720-29028468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:392-756
               
               
               Cow position:chr9:3024621-3024990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:396-728
               
               
               Cow position:chr9:2801006-2800671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:408-751
               
               
               Cow position:chr9:11519264-11518928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:408-756
               
               
               Cow position:chr9:64158653-64159008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:409-684
               
               
               Cow position:chr9:3394775-3394506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:443-751
               
               
               Cow position:chr9:3725838-3726161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 139

               
               
               Conread position:451-658
               
               
               Cow position:chr9:54994852-54995059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:465-633
               
               
               Cow position:chr9:37094531-37094700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-119
               
               
               Cow position:chrX:24175574-24175454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-129
               
               
               Cow position:chrX:19927538-19927669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-131
               
               
               Cow position:chrX:30146356-30146225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:3-130
               
               
               Cow position:chrX:2787986-2787857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:5-129
               
               
               Cow position:chrX:31192530-31192404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:287-642
               
               
               Cow position:chrX:30710661-30711020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:289-638
               
               
               Cow position:chrX:25186967-25187322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:289-642
               
               
               Cow position:chrX:970081-970432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:289-642
               
               
               Cow position:chrX:1546241-1546601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-642
               
               
               Cow position:chrX:15127936-15127575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):13, 252

               
               
               Conread position:289-684
               
               
               Cow position:chrX:9007649-9008054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 213

               
               
               Conread position:289-684
               
               
               Cow position:chrX:15598236-15598642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:289-712
               
               
               Cow position:chrX:18955208-18954778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 313

               
               
               Conread position:289-730
               
               
               Cow position:chrX:2483329-2482872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:289-750
               
               
               Cow position:chrX:23456264-23455786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:292-622
               
               
               Cow position:chrX:31192445-31192126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:292-751
               
               
               Cow position:chrX:26428701-26428254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:296-524
               
               
               Cow position:chrX:21305201-21304967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:296-552
               
               
               Cow position:chrX:6577011-6577272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 213

               
               
               Conread position:296-567
               
               
               Cow position:chrX:12704599-12704320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-582
               
               
               Cow position:chrX:5395649-5395356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-625
               
               
               Cow position:chrX:9173050-9172717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:296-628
               
               
               Cow position:chrX:3376905-3376571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:296-628
               
               
               Cow position:chrX:22610624-22610961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 260

               
               
               Conread position:296-637
               
               
               Cow position:chrX:29174283-29173939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 175

               
               
               Conread position:296-642
               
               
               Cow position:chrX:28506624-28506272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-666
               
               
               Cow position:chrX:7751220-7751591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:296-666
               
               
               Cow position:chrX:13077376-13077002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:296-666
               
               
               Cow position:chrX:13097950-13097576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:296-666
               
               
               Cow position:chrX:21339716-21340093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 317

               
               
               Conread position:296-666
               
               
               Cow position:chrX:24325830-24325453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:296-675
               
               
               Cow position:chrX:3422126-3421736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):6, 284

               
               
               Conread position:296-677
               
               
               Cow position:chrX:21489552-21489934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:296-684
               
               
               Cow position:chrX:2101181-2101571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 166

               
               
               Conread position:296-684
               
               
               Cow position:chrX:5284412-5284022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:296-684
               
               
               Cow position:chrX:5324395-5324011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:296-684
               
               
               Cow position:chrX:5862711-5863110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:296-684
               
               
               Cow position:chrX:9193328-9192932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:296-684
               
               
               Cow position:chrX:12280942-12280543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 306

               
               
               Conread position:296-684
               
               
               Cow position:chrX:13398800-13398404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:296-684
               
               
               Cow position:chrX:18218715-18219109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:296-684
               
               
               Cow position:chrX:24088716-24089114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:296-684
               
               
               Cow position:chrX:28759306-28758915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:296-684
               
               
               Cow position:chrX:37848323-37848726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):6, 324

               
               
               Conread position:296-703
               
               
               Cow position:chrX:20360617-20360197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 283

               
               
               Conread position:296-722
               
               
               Cow position:chrX:28522384-28521942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 308

               
               
               Conread position:296-728
               
               
               Cow position:chrX:27427004-27426552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:296-730
               
               
               Cow position:chrX:3085585-3085135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:296-730
               
               
               Cow position:chrX:8586410-8586860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:290
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):90, 303

               
               
               Conread position:296-730
               
               
               Cow position:chrX:12341509-12341959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 308

               
               
               Conread position:296-730
               
               
               Cow position:chrX:20316738-20316289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:296-730
               
               
               Cow position:chrX:24380621-24381077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 322

               
               
               Conread position:296-730
               
               
               Cow position:chrX:39521220-39521673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 319

               
               
               Conread position:296-750
               
               
               Cow position:chrX:6873763-6873295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 227

               
               
               Conread position:296-750
               
               
               Cow position:chrX:12655433-12654979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:296-756
               
               
               Cow position:chrX:31187920-31187447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):6, 251

               
               
               Conread position:296-756
               
               
               Cow position:chrX:33704565-33705035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:297-684
               
               
               Cow position:chrX:16363808-16363412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 318

               
               
               Conread position:298-684
               
               
               Cow position:chrX:2603366-2603761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:298-684
               
               
               Cow position:chrX:17479207-17478812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 293

               
               
               Conread position:298-752
               
               
               Cow position:chrX:22487501-22487975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:299-642
               
               
               Cow position:chrX:21222244-21222594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:301-592
               
               
               Cow position:chrX:23276439-23276736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 244

               
               
               Conread position:301-605
               
               
               Cow position:chrX:16017804-16017496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:301-639
               
               
               Cow position:chrX:38145380-38145724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:301-641
               
               
               Cow position:chrX:6887032-6886702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:301-642
               
               
               Cow position:chrX:29854244-29853897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:301-722
               
               
               Cow position:chrX:24139656-24139234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:304-756
               
               
               Cow position:chrX:2380106-2380571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:312-756
               
               
               Cow position:chrX:2787883-2787439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 289

               
               
               Conread position:315-642
               
               
               Cow position:chrX:23392267-23391935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):72, 229

               
               
               Conread position:316-684
               
               
               Cow position:chrX:31079871-31080244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:319-642
               
               
               Cow position:chrX:7092946-7093265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):67, 152

               
               
               Conread position:320-728
               
               
               Cow position:chrX:30143045-30142626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:321-587
               
               
               Cow position:chrX:27409244-27409504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:321-642
               
               
               Cow position:chrX:26527316-26527642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-666
               
               
               Cow position:chrX:12289592-12289249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:321-684
               
               
               Cow position:chrX:8669934-8670305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):65, 255

               
               
               Conread position:321-684
               
               
               Cow position:chrX:11465657-11465289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:321-684
               
               
               Cow position:chrX:26401126-26400755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 193

               
               
               Conread position:321-685
               
               
               Cow position:chrX:16698642-16699013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 282

               
               
               Conread position:321-712
               
               
               Cow position:chrX:13413775-13413371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:321-712
               
               
               Cow position:chrX:41151568-41151970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):66, 171

               
               
               Conread position:321-728
               
               
               Cow position:chrX:18532346-18532762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 171

               
               
               Conread position:321-730
               
               
               Cow position:chrX:32466594-32467018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 173

               
               
               Conread position:321-741
               
               
               Cow position:chrX:22619973-22619532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 281

               
               
               Conread position:321-756
               
               
               Cow position:chrX:19927654-19928096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 249

               
               
               Conread position:321-756
               
               
               Cow position:chrX:21270825-21270396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:321-756
               
               
               Cow position:chrX:29813055-29813507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 176

               
               
               Conread position:322-728
               
               
               Cow position:chrX:30145865-30145452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:323-666
               
               
               Cow position:chrX:22526259-22525912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):63, 251

               
               
               Conread position:323-756
               
               
               Cow position:chrX:17632483-17632025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:324-509
               
               
               Cow position:chrX:12998241-12998054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:324-611
               
               
               Cow position:chrX:32467525-32467807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):212, 64

               
               
               Conread position:326-684
               
               
               Cow position:chrX:8454105-8454464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:328-684
               
               
               Cow position:chrX:30056024-30056383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):150, 59

               
               
               Conread position:328-684
               
               
               Cow position:chrX:30666591-30666226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 285

               
               
               Conread position:328-756
               
               
               Cow position:chrX:8479053-8479499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):62, 216

               
               
               Conread position:329-684
               
               
               Cow position:chrX:15180087-15179717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:329-746
               
               
               Cow position:chrX:20698914-20698494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:330-638
               
               
               Cow position:chrX:26759241-26758928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:332-730
               
               
               Cow position:chrX:28635062-28634650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 243

               
               
               Conread position:333-726
               
               
               Cow position:chrX:32430031-32430447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 219

               
               
               Conread position:333-728
               
               
               Cow position:chrX:20795965-20796368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:334-579
               
               
               Cow position:chrX:29284090-29284340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:340-703
               
               
               Cow position:chrX:7029549-7029925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 274

               
               
               Conread position:345-660
               
               
               Cow position:chrX:11669066-11668755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:346-625
               
               
               Cow position:chrX:11534852-11535133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 228

               
               
               Conread position:346-666
               
               
               Cow position:chrX:13007262-13006941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:346-666
               
               
               Cow position:chrX:21290119-21289799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:346-666
               
               
               Cow position:chrX:24137029-24136702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:346-728
               
               
               Cow position:chrX:5834795-5834406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:346-728
               
               
               Cow position:chrX:20803505-20803890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:346-728
               
               
               Cow position:chrX:24122552-24122154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:346-733
               
               
               Cow position:chrX:15309887-15309487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 343

               
               
               Conread position:346-733
               
               
               Cow position:chrX:21602255-21602652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:346-733
               
               
               Cow position:chrX:21633214-21632814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):110, 118

               
               
               Conread position:348-728
               
               
               Cow position:chrX:22131323-22130938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:348-728
               
               
               Cow position:chrX:37757158-37757537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:351-730
               
               
               Cow position:chrX:30179614-30179227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:353-674
               
               
               Cow position:chrX:26628942-26628618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:356-733
               
               
               Cow position:chrX:27990401-27990013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):23, 184

               
               
               Conread position:356-756
               
               
               Cow position:chrX:24114790-24114385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:362-642
               
               
               Cow position:chrX:5337189-5336903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 252

               
               
               Conread position:364-708
               
               
               Cow position:chrX:25332464-25332830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:364-728
               
               
               Cow position:chrX:22777702-22778076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:365-660
               
               
               Cow position:chrX:4795309-4795604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:369-756
               
               
               Cow position:chrX:17668894-17668488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:371-684
               
               
               Cow position:chrX:23046537-23046858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 172

               
               
               Conread position:378-638
               
               
               Cow position:chrX:29092903-29093167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:408-642
               
               
               Cow position:chrX:30184459-30184227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:409-756
               
               
               Cow position:chrX:28875960-28875623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:414-666
               
               
               Cow position:chrX:10532123-10531866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:416-673
               
               
               Cow position:chrX:6909897-6909635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:433-642
               
               
               Cow position:chrX:27494159-27494374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:463-707
               
               
               Cow position:chrX:26504681-26504929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:488-756
               
               
               Cow position:chrX:12998049-12997772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:489-748
               
               
               Cow position:chrX:24481974-24481697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:508-756
               
               
               Cow position:chrX:41889368-41889109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:558-747
               
               
               Cow position:chrX:10418588-10418383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:575-751
               
               
               Cow position:chrX:32468319-32468498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 159
Conread position:	1-129
Cow position:	chr10:183039-183169 (view UCSC Genome Browser custom track)
Alignm length:	131
Alignm identity:	104
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	32, 0
Conread position:	289-599
Cow position:	chr10:19715468-19715153 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	212
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	13, 116
Conread position:	289-634
Cow position:	chr10:37060506-37060857 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	239
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	13, 206
Conread position:	289-642
Cow position:	chr10:123894-124245 (view UCSC Genome Browser custom track)
Alignm length:	360
Alignm identity:	236
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	13, 175
Conread position:	289-684
Cow position:	chr10:7283103-7282704 (view UCSC Genome Browser custom track)
Alignm length:	406
Alignm identity:	266
Alignm E-value:	9e-37
Alignm gaps (pig, cow):	13, 48
Conread position:	289-756
Cow position:	chr10:1375113-1375598 (view UCSC Genome Browser custom track)
Alignm length:	490
Alignm identity:	331
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 55
Conread position:	296-675
Cow position:	chr10:57559964-57559576 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	251
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	26, 213
Conread position:	296-681
Cow position:	chr10:51953019-51952627 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	257
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	26, 298
Conread position:	296-684
Cow position:	chr10:281037-280638 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	265
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	26, 0
Conread position:	296-712
Cow position:	chr10:38345780-38345349 (view UCSC Genome Browser custom track)
Alignm length:	435
Alignm identity:	287
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	6, 199
Conread position:	300-684
Cow position:	chr10:37769414-37769804 (view UCSC Genome Browser custom track)
Alignm length:	398
Alignm identity:	272
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	55, 36
Conread position:	301-628
Cow position:	chr10:34318665-34318347 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	225
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	73, 36
Conread position:	301-642
Cow position:	chr10:29847022-29846674 (view UCSC Genome Browser custom track)
Alignm length:	351
Alignm identity:	242
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	20, 194
Conread position:	301-712
Cow position:	chr10:19143749-19143325 (view UCSC Genome Browser custom track)
Alignm length:	428
Alignm identity:	288
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	35, 192
Conread position:	312-642
Cow position:	chr10:19511206-19511541 (view UCSC Genome Browser custom track)
Alignm length:	340
Alignm identity:	237
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	23, 183
Conread position:	312-684
Cow position:	chr10:10581275-10581654 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	262
Alignm E-value:	4.99983e-42
Alignm gaps (pig, cow):	75, 9
Conread position:	313-517
Cow position:	chr10:183144-183353 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	165
Alignm E-value:	6.02558e-44
Alignm gaps (pig, cow):	9, 0
Conread position:	321-563
Cow position:	chr10:21466865-21467112 (view UCSC Genome Browser custom track)
Alignm length:	248
Alignm identity:	170
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	65, 0
Conread position:	321-666
Cow position:	chr10:21382323-21382679 (view UCSC Genome Browser custom track)
Alignm length:	364
Alignm identity:	256
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	43, 208
Conread position:	321-683
Cow position:	chr10:20396399-20396749 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	251
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	66, 159