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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01D030025.5
        

               
Conread position:
               
13-344
               

               
Cow position:
               
chr1:101149991-101149668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
13-377
               

               
Cow position:
               
chr1:88635530-88635167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr1:11291947-11292366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr1:20829047-20828617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
282, 134
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr1:61309161-61308731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
14-434
               

               
Cow position:
               
chr1:62925769-62925357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
281, 12
               

               
Conread position:
               
15-346
               

               
Cow position:
               
chr1:28711072-28710739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
280, 132
               

               
Conread position:
               
23-440
               

               
Cow position:
               
chr1:82564651-82564243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
271, 124
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr1:79920581-79920989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr1:55276340-55276758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr1:71562428-71562847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
26-376
               

               
Cow position:
               
chr1:82903094-82902752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
191, 57
               

               
Conread position:
               
26-440
               

               
Cow position:
               
chr1:39543913-39543509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
269, 48
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chr1:8554473-8554049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
283, 132
               

               
Conread position:
               
27-346
               

               
Cow position:
               
chr1:18880249-18880562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 71
               

               
Conread position:
               
27-346
               

               
Cow position:
               
chr1:40053499-40053178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
268, 125
               

               
Conread position:
               
30-473
               

               
Cow position:
               
chr1:11900509-11900947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
32-476
               

               
Cow position:
               
chr1:30766549-30766975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
42-379
               

               
Cow position:
               
chr1:99313026-99313359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
253, 22
               

               
Conread position:
               
50-339
               

               
Cow position:
               
chr1:15347464-15347752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
245, 102
               

               
Conread position:
               
67-339
               

               
Cow position:
               
chr1:101857880-101858147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 96
               

               
Conread position:
               
67-369
               

               
Cow position:
               
chr1:74280082-74280383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
200, 51
               

               
Conread position:
               
76-471
               

               
Cow position:
               
chr1:37654301-37654674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
332, 46
               

               
Conread position:
               
103-470
               

               
Cow position:
               
chr1:39880790-39880447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
106-450
               

               
Cow position:
               
chr1:17036493-17036830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
189, 52
               

               
Conread position:
               
140-475
               

               
Cow position:
               
chr1:58999070-58998743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
178-376
               

               
Cow position:
               
chr1:30858788-30858983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 47
               

               
Conread position:
               
209-477
               

               
Cow position:
               
chr1:64833938-64834193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr10:62216788-62216469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
13-406
               

               
Cow position:
               
chr10:32650915-32650529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
13-433
               

               
Cow position:
               
chr10:62778529-62778112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
13-463
               

               
Cow position:
               
chr10:47063595-47063165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
14-345
               

               
Cow position:
               
chr10:19215612-19215283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr10:21740583-21741004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
270, 45
               

               
Conread position:
               
26-263
               

               
Cow position:
               
chr10:51215515-51215285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
52-484
               

               
Cow position:
               
chr10:13422598-13423025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
62-343
               

               
Cow position:
               
chr10:6168126-6167850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 87
               

               
Conread position:
               
74-473
               

               
Cow position:
               
chr10:47967507-47967894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
76-387
               

               
Cow position:
               
chr10:37872010-37872322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr10:23353017-23353208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
100-371
               

               
Cow position:
               
chr10:58664675-58664403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 114
               

               
Conread position:
               
117-384
               

               
Cow position:
               
chr10:65308201-65307931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
178, 35
               

               
Conread position:
               
144-311
               

               
Cow position:
               
chr10:23133358-23133191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
413-573
               

               
Cow position:
               
chr10:21923278-21923435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
456-578
               

               
Cow position:
               
chr10:15601980-15602101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
577-931
               

               
Cow position:
               
chr10:47063178-47062820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
1093-1274
               

               
Cow position:
               
chr10:47062820-47062640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1093-1282
               

               
Cow position:
               
chr10:13027130-13027322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
13-306
               

               
Cow position:
               
chr11:54209437-54209147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr11:17107866-17108286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr11:19064430-19064850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
282, 131
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr11:67846751-67847184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr11:36744373-36744693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr11:57628239-57628647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
270, 137
               

               
Conread position:
               
25-473
               

               
Cow position:
               
chr11:20920938-20921381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
27-376
               

               
Cow position:
               
chr11:54434535-54434175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 136
               

               
Conread position:
               
28-377
               

               
Cow position:
               
chr11:21466881-21466530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
192, 130
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chr11:34750514-34750184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
101, 86
               

               
Conread position:
               
54-370
               

               
Cow position:
               
chr11:9580759-9581080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
64-307
               

               
Cow position:
               
chr11:39429204-39428961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
67-318
               

               
Cow position:
               
chr11:35430005-35430257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
132, 86
               

               
Conread position:
               
76-369
               

               
Cow position:
               
chr11:4626391-4626684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
219, 91
               

               
Conread position:
               
97-346
               

               
Cow position:
               
chr11:81580779-81581023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
122-473
               

               
Cow position:
               
chr11:53679317-53678955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 153
               

               
Conread position:
               
456-578
               

               
Cow position:
               
chr11:16315081-16314959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-338
               

               
Cow position:
               
chr12:2906-2585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
13-363
               

               
Cow position:
               
chr12:21207801-21207452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr12:21426801-21426373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr12:37558662-37558229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
25-477
               

               
Cow position:
               
chr12:26141908-26141461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
52-354
               

               
Cow position:
               
chr12:17616836-17617134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
100-280
               

               
Cow position:
               
chr12:25913751-25913928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
121-473
               

               
Cow position:
               
chr12:35763489-35763164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
315, 32
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr12:3068324-3068628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
147, 118
               

               
Conread position:
               
158-281
               

               
Cow position:
               
chr12:38202613-38202493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
428-578
               

               
Cow position:
               
chr12:22048135-22047987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
442-578
               

               
Cow position:
               
chr12:44576438-44576303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
13-344
               

               
Cow position:
               
chr13:33824845-33825175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
13-439
               

               
Cow position:
               
chr13:15520629-15521056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr13:21840308-21840747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr13:4872950-4872528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr13:30244860-30245285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 73
               

               
Conread position:
               
46-372
               

               
Cow position:
               
chr13:49554313-49553989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
49-281
               

               
Cow position:
               
chr13:4787776-4787550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
50-338
               

               
Cow position:
               
chr13:38843294-38843584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
220, 87
               

               
Conread position:
               
55-472
               

               
Cow position:
               
chr13:7596898-7596477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
67-277
               

               
Cow position:
               
chr13:46271013-46270805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr13:41526892-41527179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
231, 57
               

               
Conread position:
               
69-270
               

               
Cow position:
               
chr13:33936214-33936016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
76-302
               

               
Cow position:
               
chr13:19615652-19615872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
103-377
               

               
Cow position:
               
chr13:51458394-51458132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
122-281
               

               
Cow position:
               
chr13:3679678-3679833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
122-346
               

               
Cow position:
               
chr13:4531234-4531459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
128-289
               

               
Cow position:
               
chr13:42113260-42113419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
456-585
               

               
Cow position:
               
chr13:20654099-20653970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
460-578
               

               
Cow position:
               
chr13:20854691-20854574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
13-307
               

               
Cow position:
               
chr14:29265197-29265488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
13-334
               

               
Cow position:
               
chr14:44422316-44422003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
13-444
               

               
Cow position:
               
chr14:29048141-29048569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
14-350
               

               
Cow position:
               
chr14:50134830-50134497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
146, 162
               

               
Conread position:
               
14-450
               

               
Cow position:
               
chr14:750329-749901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr14:23901051-23901364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-472
               

               
Cow position:
               
chr14:33394027-33394466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr14:40663340-40663136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
67-303
               

               
Cow position:
               
chr14:38888446-38888679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 86
               

               
Conread position:
               
105-354
               

               
Cow position:
               
chr14:32286223-32286474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
121-420
               

               
Cow position:
               
chr14:12519610-12519324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
163-471
               

               
Cow position:
               
chr14:36950398-36950088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
460-578
               

               
Cow position:
               
chr14:26115884-26116000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
12-352
               

               
Cow position:
               
chr15:35578267-35578605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
167, 127
               

               
Conread position:
               
13-359
               

               
Cow position:
               
chr15:1782018-1781669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr15:18268223-18268654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
15-346
               

               
Cow position:
               
chr15:1772259-1771930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
280, 48
               

               
Conread position:
               
15-450
               

               
Cow position:
               
chr15:1519389-1519819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
360, 48
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr15:22204362-22204685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr15:4196214-4195796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr15:13428790-13428375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr15:20749166-20748739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
270, 137
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr15:36970675-36970250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
270, 119
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr15:2647905-2648350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
270, 133
               

               
Conread position:
               
27-380
               

               
Cow position:
               
chr15:13481240-13481591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
50-339
               

               
Cow position:
               
chr15:29009569-29009281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
245, 102
               

               
Conread position:
               
50-346
               

               
Cow position:
               
chr15:21877631-21877926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
245, 102
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr15:7969295-7969565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
75-346
               

               
Cow position:
               
chr15:11598413-11598686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
220, 77
               

               
Conread position:
               
426-578
               

               
Cow position:
               
chr15:36435040-36435190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
445-586
               

               
Cow position:
               
chr15:15147353-15147212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
460-578
               

               
Cow position:
               
chr15:242070-241952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
23-476
               

               
Cow position:
               
chr16:5918888-5918444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
271, 78
               

               
Conread position:
               
24-347
               

               
Cow position:
               
chr16:26517605-26517926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr16:6943027-6942620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr16:32606232-32605824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
28-418
               

               
Cow position:
               
chr16:12487720-12488104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
252, 125
               

               
Conread position:
               
28-473
               

               
Cow position:
               
chr16:56165202-56164771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
36-473
               

               
Cow position:
               
chr16:3558888-3558465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
126, 89
               

               
Conread position:
               
55-260
               

               
Cow position:
               
chr16:55347769-55347568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
77, 100
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr16:33622584-33622841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
103-488
               

               
Cow position:
               
chr16:30070162-30069786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
214, 61
               

               
Conread position:
               
118-308
               

               
Cow position:
               
chr16:25762133-25761945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
174, 45
               

               
Conread position:
               
472-576
               

               
Cow position:
               
chr16:24672652-24672756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr17:14217031-14217450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
282, 139
               

               
Conread position:
               
13-443
               

               
Cow position:
               
chr17:8209100-8208681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr17:20665732-20666170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
13-476
               

               
Cow position:
               
chr17:15435785-15435330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr17:9653475-9653791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr17:22160897-22160574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-370
               

               
Cow position:
               
chr17:1382833-1383178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
270, 133
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr17:6089180-6089534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-477
               

               
Cow position:
               
chr17:24633935-24633491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
284, 127
               

               
Conread position:
               
26-311
               

               
Cow position:
               
chr17:12780650-12780921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
27-436
               

               
Cow position:
               
chr17:25737642-25737242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
198-468
               

               
Cow position:
               
chr17:5736285-5736564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 205
               

               
Conread position:
               
471-611
               

               
Cow position:
               
chr17:11105933-11105794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
13-439
               

               
Cow position:
               
chr18:28973702-28974125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr18:19352587-19352146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
14-464
               

               
Cow position:
               
chr18:35801519-35801955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 48
               

               
Conread position:
               
15-305
               

               
Cow position:
               
chr18:33953370-33953656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
280, 147
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr18:51689813-51689462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
132, 143
               

               
Conread position:
               
25-477
               

               
Cow position:
               
chr18:22602676-22602229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr18:16537062-16536717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
262, 99
               

               
Conread position:
               
28-307
               

               
Cow position:
               
chr18:36484433-36484161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
28-374
               

               
Cow position:
               
chr18:48452719-48452373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
279, 26
               

               
Conread position:
               
62-281
               

               
Cow position:
               
chr18:37525445-37525223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
63-281
               

               
Cow position:
               
chr18:20801347-20801556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
76-331
               

               
Cow position:
               
chr18:29955374-29955130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
97-256
               

               
Cow position:
               
chr18:13356993-13356834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
123-432
               

               
Cow position:
               
chr18:32305922-32305609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
143-371
               

               
Cow position:
               
chr18:27005081-27005310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
149, 19
               

               
Conread position:
               
457-559
               

               
Cow position:
               
chr18:22180592-22180694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
463-578
               

               
Cow position:
               
chr18:52251672-52251786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr19:30450750-30450435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
11-346
               

               
Cow position:
               
chr19:15042364-15042038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
15-433
               

               
Cow position:
               
chr19:43143919-43143509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
15-436
               

               
Cow position:
               
chr19:10672100-10672516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr19:32244877-32244466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
27-405
               

               
Cow position:
               
chr19:44760048-44759672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
62-371
               

               
Cow position:
               
chr19:27212337-27212032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
233, 47
               

               
Conread position:
               
66-310
               

               
Cow position:
               
chr19:25729014-25729255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
76-371
               

               
Cow position:
               
chr19:30744258-30743964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
219, 82
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr19:38435070-38434842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
158, 24
               

               
Conread position:
               
454-578
               

               
Cow position:
               
chr19:27968483-27968603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
458-579
               

               
Cow position:
               
chr19:17355068-17354948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr2:82167257-82166937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
13-344
               

               
Cow position:
               
chr2:52062315-52061984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
13-347
               

               
Cow position:
               
chr2:10269012-10269346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
13-406
               

               
Cow position:
               
chr2:16899895-16899508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr2:2184608-2185029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr2:25030827-25031257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr2:44090948-44090517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-470
               

               
Cow position:
               
chr2:24449372-24449829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
13-470
               

               
Cow position:
               
chr2:24458719-24459176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
13-473
               

               
Cow position:
               
chr2:85356123-85356574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr2:57142051-57142364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr2:51990895-51991302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr2:9907548-9907131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr2:49471882-49471457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr2:80956001-80956430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
297, 127
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr2:3324929-3325377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-372
               

               
Cow position:
               
chr2:27611454-27611796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
49-344
               

               
Cow position:
               
chr2:41149653-41149360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
49-471
               

               
Cow position:
               
chr2:25102793-25103193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
246, 7
               

               
Conread position:
               
55-372
               

               
Cow position:
               
chr2:35170973-35171284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
66-316
               

               
Cow position:
               
chr2:49289806-49290050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
66-477
               

               
Cow position:
               
chr2:5886540-5886941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
67-278
               

               
Cow position:
               
chr2:2833230-2833018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
67-372
               

               
Cow position:
               
chr2:69139142-69138837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 86
               

               
Conread position:
               
73-381
               

               
Cow position:
               
chr2:62828091-62828396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
245, 74
               

               
Conread position:
               
77-482
               

               
Cow position:
               
chr2:6147221-6146833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 56
               

               
Conread position:
               
126-346
               

               
Cow position:
               
chr2:46740504-46740724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
13-434
               

               
Cow position:
               
chr20:5484352-5483940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr20:11678960-11679273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr20:5560565-5560919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
75-420
               

               
Cow position:
               
chr20:4799551-4799892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
220, 83
               

               
Conread position:
               
100-462
               

               
Cow position:
               
chr20:32215058-32214709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
125-486
               

               
Cow position:
               
chr20:35767958-35767609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
245, 41
               

               
Conread position:
               
11-374
               

               
Cow position:
               
chr21:38857887-38858238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
13-346
               

               
Cow position:
               
chr21:11505869-11505533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chr21:6339835-6339562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chr21:8678091-8678364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr21:11453387-11453707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr21:12055732-12056153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr21:26638196-26638612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr21:37045179-37044763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
270, 76
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chr21:7258900-7258572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
27-344
               

               
Cow position:
               
chr21:30599657-30599967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
41-354
               

               
Cow position:
               
chr21:4133124-4133431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
67-338
               

               
Cow position:
               
chr21:3615519-3615253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
228, 91
               

               
Conread position:
               
101-377
               

               
Cow position:
               
chr21:29754856-29754591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
206, 51
               

               
Conread position:
               
106-440
               

               
Cow position:
               
chr21:27708951-27708623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
189, 41
               

               
Conread position:
               
125-473
               

               
Cow position:
               
chr21:457246-456920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
192-380
               

               
Cow position:
               
chr21:44847298-44847109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 83
               

               
Conread position:
               
450-578
               

               
Cow position:
               
chr21:31278482-31278353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
461-591
               

               
Cow position:
               
chr21:38918484-38918354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-346
               

               
Cow position:
               
chr22:537210-536874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-373
               

               
Cow position:
               
chr22:5233196-5233555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr22:24949939-24949518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr22:27309664-27310088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr22:44489996-44489562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr22:10546741-10546322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chr22:8715736-8716147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
76-333
               

               
Cow position:
               
chr22:11354781-11355035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
80-450
               

               
Cow position:
               
chr22:6985296-6984926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
215, 72
               

               
Conread position:
               
86-238
               

               
Cow position:
               
chr22:36257265-36257119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
104-370
               

               
Cow position:
               
chr22:37218476-37218221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
166, 11
               

               
Conread position:
               
162-372
               

               
Cow position:
               
chr22:9115780-9115569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
149, 106
               

               
Conread position:
               
407-578
               

               
Cow position:
               
chr22:19306169-19305999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 41
               

               
Conread position:
               
485-578
               

               
Cow position:
               
chr22:35578585-35578678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-406
               

               
Cow position:
               
chr23:15177183-15176798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr23:4359926-4359508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 152
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr23:31446911-31446486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-468
               

               
Cow position:
               
chr23:2313143-2313579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
269, 80
               

               
Conread position:
               
46-472
               

               
Cow position:
               
chr23:8302195-8302607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
248, 67
               

               
Conread position:
               
117-368
               

               
Cow position:
               
chr23:32724988-32724738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
432-589
               

               
Cow position:
               
chr23:12031661-12031501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
456-630
               

               
Cow position:
               
chr23:24689513-24689342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 94
               

               
Conread position:
               
12-444
               

               
Cow position:
               
chr24:9188536-9188960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
283, 140
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr24:6084212-6083791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr24:6434435-6434015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
25-434
               

               
Cow position:
               
chr24:44017728-44017326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-439
               

               
Cow position:
               
chr24:8030333-8029926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
269, 133
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr24:12485135-12485543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
26-475
               

               
Cow position:
               
chr24:16644834-16644398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
273, 32
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr24:801948-802262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
104-477
               

               
Cow position:
               
chr24:2636223-2635855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
191, 48
               

               
Conread position:
               
469-573
               

               
Cow position:
               
chr24:33238068-33238172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr25:18027474-18027797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr25:20776760-20777165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
26-377
               

               
Cow position:
               
chr25:28030479-28030835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
283, 190
               

               
Conread position:
               
27-371
               

               
Cow position:
               
chr25:22125459-22125804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
284, 120
               

               
Conread position:
               
67-338
               

               
Cow position:
               
chr25:33273524-33273258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
225, 43
               

               
Conread position:
               
123-311
               

               
Cow position:
               
chr25:18148856-18148669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
13-443
               

               
Cow position:
               
chr26:12588392-12588812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr26:11253897-11254210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr26:18855248-18854830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
270, 133
               

               
Conread position:
               
26-339
               

               
Cow position:
               
chr26:18743823-18744129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 90
               

               
Conread position:
               
29-443
               

               
Cow position:
               
chr26:11301942-11301548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
79-420
               

               
Cow position:
               
chr26:30214234-30213903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
276, 54
               

               
Conread position:
               
106-444
               

               
Cow position:
               
chr26:2198705-2198375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
189, 26
               

               
Conread position:
               
119-459
               

               
Cow position:
               
chr26:5941075-5941416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
125-443
               

               
Cow position:
               
chr26:19536244-19535931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
214, 7
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr26:35099828-35099586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
24, 194
               

               
Conread position:
               
431-585
               

               
Cow position:
               
chr26:12027975-12028122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
459-573
               

               
Cow position:
               
chr26:10764451-10764337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1122-1281
               

               
Cow position:
               
chr26:30073861-30073702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 88
               

               
Conread position:
               
13-344
               

               
Cow position:
               
chr27:9993096-9993427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr27:16034285-16034720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr27:15541425-15541018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
122-477
               

               
Cow position:
               
chr27:18185268-18184919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
13-339
               

               
Cow position:
               
chr28:18520311-18520633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
207, 89
               

               
Conread position:
               
13-473
               

               
Cow position:
               
chr28:7002143-7001686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr28:13440736-13441144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr28:14750688-14750281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-444
               

               
Cow position:
               
chr28:24587575-24587162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
270, 143
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr28:15951120-15950676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
49-468
               

               
Cow position:
               
chr28:30559110-30558703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
99-372
               

               
Cow position:
               
chr28:24539502-24539231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
118-366
               

               
Cow position:
               
chr28:33590816-33591062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
183, 58
               

               
Conread position:
               
404-590
               

               
Cow position:
               
chr28:7697694-7697884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
444-612
               

               
Cow position:
               
chr28:4936999-4937166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
156, 136
               

               
Conread position:
               
457-578
               

               
Cow position:
               
chr28:17620132-17620253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-301
               

               
Cow position:
               
chr29:27980800-27981085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
282, 14
               

               
Conread position:
               
25-373
               

               
Cow position:
               
chr29:15894744-15895091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
130, 138
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr29:28060558-28060967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
171, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr29:15969044-15969466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-253
               

               
Cow position:
               
chr29:42526687-42526467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
49-450
               

               
Cow position:
               
chr29:31181207-31180812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
50-476
               

               
Cow position:
               
chr29:27250253-27250672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
245, 108
               

               
Conread position:
               
65-463
               

               
Cow position:
               
chr29:21426989-21427379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
200, 37
               

               
Conread position:
               
67-286
               

               
Cow position:
               
chr29:38038026-38038244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
67-450
               

               
Cow position:
               
chr29:35296938-35296559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
228, 95
               

               
Conread position:
               
117-318
               

               
Cow position:
               
chr29:32638270-32638473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr29:18012969-18013220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
122-380
               

               
Cow position:
               
chr29:32318570-32318315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
461-578
               

               
Cow position:
               
chr29:28420974-28420857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
12-434
               

               
Cow position:
               
chr3:2654144-2653734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr3:472569-472251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-380
               

               
Cow position:
               
chr3:53410948-53410588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
282, 90
               

               
Conread position:
               
13-398
               

               
Cow position:
               
chr3:66638777-66638399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-420
               

               
Cow position:
               
chr3:77474797-77474390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
13-443
               

               
Cow position:
               
chr3:41211700-41212124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr3:6782421-6781990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
14-450
               

               
Cow position:
               
chr3:66890926-66891354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
281, 133
               

               
Conread position:
               
22-480
               

               
Cow position:
               
chr3:36795288-36795713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr3:57856761-57856407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-445
               

               
Cow position:
               
chr3:49613953-49614373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr3:2917485-2917062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr3:17828625-17829047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr3:37969103-37968684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 119
               

               
Conread position:
               
27-344
               

               
Cow position:
               
chr3:10239671-10239356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
27-345
               

               
Cow position:
               
chr3:26666708-26667016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
130, 49
               

               
Conread position:
               
28-493
               

               
Cow position:
               
chr3:57995604-57996053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
254, 81
               

               
Conread position:
               
49-311
               

               
Cow position:
               
chr3:84949147-84949405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
50-450
               

               
Cow position:
               
chr3:4285885-4285488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
102, 113
               

               
Conread position:
               
50-450
               

               
Cow position:
               
chr3:64028086-64028483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
245, 102
               

               
Conread position:
               
55-376
               

               
Cow position:
               
chr3:37201801-37201492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
55-478
               

               
Cow position:
               
chr3:27552711-27552298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
62-301
               

               
Cow position:
               
chr3:12743047-12742822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
67-329
               

               
Cow position:
               
chr3:47184201-47184457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
67-372
               

               
Cow position:
               
chr3:15089262-15088953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
76-377
               

               
Cow position:
               
chr3:84863686-84863991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
105-476
               

               
Cow position:
               
chr3:22335837-22335476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
190, 47
               

               
Conread position:
               
106-476
               

               
Cow position:
               
chr3:72705141-72704776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
189, 46
               

               
Conread position:
               
121-371
               

               
Cow position:
               
chr3:9677753-9678004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
13-420
               

               
Cow position:
               
chr4:66179146-66179544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr4:528835-528415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr4:602835-602401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr4:6268786-6269217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
14-307
               

               
Cow position:
               
chr4:33995752-33995456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
14-439
               

               
Cow position:
               
chr4:17926413-17926841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
14-440
               

               
Cow position:
               
chr4:3125620-3125202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
281, 138
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr4:65223705-65224018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr4:47764341-47764787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-351
               

               
Cow position:
               
chr4:12715810-12715490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr4:46537224-46536920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
266, 25
               

               
Conread position:
               
67-463
               

               
Cow position:
               
chr4:47247390-47247782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
225, 35
               

               
Conread position:
               
68-391
               

               
Cow position:
               
chr4:26630051-26630378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
202, 87
               

               
Conread position:
               
124-380
               

               
Cow position:
               
chr4:26718250-26717993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 220
               

               
Conread position:
               
185-505
               

               
Cow position:
               
chr4:42970901-42971221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 94
               

               
Conread position:
               
462-573
               

               
Cow position:
               
chr4:64336069-64336180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
464-581
               

               
Cow position:
               
chr4:50494987-50494869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
12-450
               

               
Cow position:
               
chr5:2531207-2530773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
283, 140
               

               
Conread position:
               
13-300
               

               
Cow position:
               
chr5:74651733-74652016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
13-302
               

               
Cow position:
               
chr5:36717501-36717792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr5:27909336-27909752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr5:32772418-32771997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
13-472
               

               
Cow position:
               
chr5:49593519-49593977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
23-474
               

               
Cow position:
               
chr5:62543211-62542783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
25-329
               

               
Cow position:
               
chr5:4088728-4088427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr5:24576838-24576524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 134
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr5:44459406-44459093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr5:48468356-48468676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
270, 68
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr5:26079295-26079702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr5:54932295-54932701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
270, 137
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr5:14380086-14379668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr5:59482177-59481754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
25-487
               

               
Cow position:
               
chr5:29042435-29041971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chr5:53715176-53714755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
269, 126
               

               
Conread position:
               
26-474
               

               
Cow position:
               
chr5:34968228-34968666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
27-476
               

               
Cow position:
               
chr5:18665883-18665439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
268, 125
               

               
Conread position:
               
49-471
               

               
Cow position:
               
chr5:15682287-15682702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
387, 114
               

               
Conread position:
               
51-370
               

               
Cow position:
               
chr5:69620695-69620380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
62-347
               

               
Cow position:
               
chr5:62761873-62761595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 124
               

               
Conread position:
               
66-377
               

               
Cow position:
               
chr5:14188286-14188588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
233, 94
               

               
Conread position:
               
67-307
               

               
Cow position:
               
chr5:21148054-21148277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
67-450
               

               
Cow position:
               
chr5:59060502-59060118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
228, 85
               

               
Conread position:
               
100-436
               

               
Cow position:
               
chr5:25846453-25846792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
204, 62
               

               
Conread position:
               
103-476
               

               
Cow position:
               
chr5:57517854-57518210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr5:65723167-65723394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
453-588
               

               
Cow position:
               
chr5:60514771-60514907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
463-651
               

               
Cow position:
               
chr5:8149066-8149248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
12-450
               

               
Cow position:
               
chr6:17598201-17598641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
283, 140
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr6:13104136-13103716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr6:57869925-57870363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr6:2374765-2374449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr6:1405173-1405579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr6:2554771-2554365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
270, 81
               

               
Conread position:
               
25-444
               

               
Cow position:
               
chr6:331403-331812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
49-472
               

               
Cow position:
               
chr6:2954918-2955327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
282, 109
               

               
Conread position:
               
50-450
               

               
Cow position:
               
chr6:34127393-34126992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
105, 235
               

               
Conread position:
               
67-466
               

               
Cow position:
               
chr6:57009840-57010220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
350, 86
               

               
Conread position:
               
77-474
               

               
Cow position:
               
chr6:20650526-20650917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr6:19453912-19453673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
193, 61
               

               
Conread position:
               
106-450
               

               
Cow position:
               
chr6:7141487-7141825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
189, 46
               

               
Conread position:
               
148-345
               

               
Cow position:
               
chr6:64540983-64540789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
65, 162
               

               
Conread position:
               
410-578
               

               
Cow position:
               
chr6:43906370-43906540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
13-439
               

               
Cow position:
               
chr7:1372484-1372910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
13-476
               

               
Cow position:
               
chr7:3234515-3234974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr7:47375152-47374839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
130, 151
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr7:20528520-20528842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
270, 133
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr7:21320311-21319988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-371
               

               
Cow position:
               
chr7:20555869-20555525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr7:3300999-3301353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-377
               

               
Cow position:
               
chr7:23815815-23816166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr7:26026194-26025775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
269, 127
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr7:61559368-61558922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
50-444
               

               
Cow position:
               
chr7:31634737-31634349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 12
               

               
Conread position:
               
52-478
               

               
Cow position:
               
chr7:5152613-5153026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
76-473
               

               
Cow position:
               
chr7:3487202-3487601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
120-344
               

               
Cow position:
               
chr7:26316725-26316512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
201, 121
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr7:66342897-66343090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
170, 17
               

               
Conread position:
               
461-591
               

               
Cow position:
               
chr7:30290683-30290811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr8:27578757-27578328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
25-305
               

               
Cow position:
               
chr8:8556806-8557083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
26-368
               

               
Cow position:
               
chr8:32467766-32468101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
26-474
               

               
Cow position:
               
chr8:35587941-35587500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
269, 127
               

               
Conread position:
               
50-476
               

               
Cow position:
               
chr8:8655902-8656318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
245, 56
               

               
Conread position:
               
62-473
               

               
Cow position:
               
chr8:21534009-21533614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
76-449
               

               
Cow position:
               
chr8:37302878-37302518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
87-464
               

               
Cow position:
               
chr8:6692309-6692691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 192
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr9:17541322-17541085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chr9:34242588-34243011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr9:25483881-25483442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr9:9055071-9055384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chr9:16268366-16267947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 184
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chr9:31194172-31194597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
270, 133
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr9:1076203-1076648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 134
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chr9:36724497-36724052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
183, 122
               

               
Conread position:
               
46-334
               

               
Cow position:
               
chr9:40259186-40258904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
145-473
               

               
Cow position:
               
chr9:22701974-22702301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
13-340
               

               
Cow position:
               
chrX:18659869-18660195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 152
               

               
Conread position:
               
13-346
               

               
Cow position:
               
chrX:11465089-11465421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
13-346
               

               
Cow position:
               
chrX:35529773-35529438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
13-373
               

               
Cow position:
               
chrX:7093511-7093152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
13-440
               

               
Cow position:
               
chrX:22525691-22526109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chrX:12289029-12289459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
282, 134
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chrX:18219310-18218879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
14-346
               

               
Cow position:
               
chrX:12803951-12804282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
12, 156
               

               
Conread position:
               
15-307
               

               
Cow position:
               
chrX:24521512-24521223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
16-405
               

               
Cow position:
               
chrX:24122011-24122389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
246, 47
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chrX:41411121-41411394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chrX:39521807-39521494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
284, 127
               

               
Conread position:
               
25-345
               

               
Cow position:
               
chrX:8670492-8670174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
270, 127
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chrX:7481503-7481184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-434
               

               
Cow position:
               
chrX:9192744-9193146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-436
               

               
Cow position:
               
chrX:22778212-22777813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chrX:27426416-27426824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chrX:30666039-30666446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
270, 107
               

               
Conread position:
               
25-440
               

               
Cow position:
               
chrX:37848914-37848505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-443
               

               
Cow position:
               
chrX:8479601-8479195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chrX:2603949-2603523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chrX:2859901-2860324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chrX:7030089-7029665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-450
               

               
Cow position:
               
chrX:17478623-17479047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 123
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chrX:13076797-13077235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
25-476
               

               
Cow position:
               
chrX:13097371-13097809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
270, 122
               

               
Conread position:
               
26-372
               

               
Cow position:
               
chrX:37180963-37181310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
26-450
               

               
Cow position:
               
chrX:10531659-10532083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
269, 126
               

               
Conread position:
               
26-476
               

               
Cow position:
               
chrX:17631925-17632372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
46-303
               

               
Cow position:
               
chrX:20700620-20700875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
47-374
               

               
Cow position:
               
chrX:29064552-29064234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chrX:235098-234786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
234, 54
               

               
Conread position:
               
49-372
               

               
Cow position:
               
chrX:20426810-20426497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
55-372
               

               
Cow position:
               
chrX:23947298-23946960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
56, 194
               

               
Conread position:
               
58-381
               

               
Cow position:
               
chrX:21733524-21733855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
62-281
               

               
Cow position:
               
chrX:24768075-24768292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
62-473
               

               
Cow position:
               
chrX:11026158-11025759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 71
               

               
Conread position:
               
62-473
               

               
Cow position:
               
chrX:14816226-14815818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
172, 260
               

               
Conread position:
               
67-311
               

               
Cow position:
               
chrX:18939355-18939598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
198, 10
               

               
Conread position:
               
69-375
               

               
Cow position:
               
chrX:4080620-4080945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
92-371
               

               
Cow position:
               
chrX:25340267-25339994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
213, 61
               

               
Conread position:
               
105-440
               

               
Cow position:
               
chrX:9008160-9007836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
109-376
               

               
Cow position:
               
chrX:19605546-19605804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
202, 44
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chrX:7751715-7751382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
186, 43
               

               
Conread position:
               
123-301
               

               
Cow position:
               
chrX:23419988-23420159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
147-353
               

               
Cow position:
               
chrX:11727795-11727585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
163-459
               

               
Cow position:
               
chrX:18415831-18415539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 119
               

               
Conread position:
               
163-473
               

               
Cow position:
               
chrX:21771355-21771661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 73
               

               
Conread position:
               
419-588
               

               
Cow position:
               
chrX:17524098-17524262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
437-590
               

               
Cow position:
               
chrX:31489793-31489640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
448-578
               

               
Cow position:
               
chrX:44040435-44040307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
461-590
               

               
Cow position:
               
chrX:6544492-6544362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
465-586
               

               
Cow position:
               
chrX:11670930-11670810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 0