Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01E120104.5.5 |
| Conread position: | 471-764 |
| Cow position: | chr1:76254663-76254373 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 471-905 |
| Cow position: | chr1:72158232-72158660 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 22 |
| Conread position: | 522-765 |
| Cow position: | chr1:60822430-60822673 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 731-883 |
| Cow position: | chr1:82396322-82396170 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 131-796 |
| Cow position: | chr10:27289461-27290126 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-599 |
| Cow position: | chr10:22740228-22740356 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-613 |
| Cow position: | chr11:31446930-31447425 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 305 |
| Conread position: | 131-286 |
| Cow position: | chr11:68998941-68999102 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 325-771 |
| Cow position: | chr11:68999098-68999546 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 323 |
| Conread position: | 503-857 |
| Cow position: | chr11:78298416-78298762 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 214 |
| Conread position: | 549-857 |
| Cow position: | chr11:35219310-35219622 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 271 |
| Conread position: | 656-859 |
| Cow position: | chr11:31447908-31448106 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 473-858 |
| Cow position: | chr12:2955517-2955902 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 268 |
| Conread position: | 471-683 |
| Cow position: | chr13:59902924-59902710 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 473-701 |
| Cow position: | chr13:25956967-25957175 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 686-845 |
| Cow position: | chr13:25957236-25957393 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 120-771 |
| Cow position: | chr15:23806488-23805841 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 117 |
| Conread position: | 470-697 |
| Cow position: | chr15:15051925-15052151 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 471-745 |
| Cow position: | chr15:23458906-23458630 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 134 |
| Conread position: | 703-856 |
| Cow position: | chr15:15052196-15052357 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 121-871 |
| Cow position: | chr16:2455565-2456311 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 688, 473 |
| Conread position: | 471-865 |
| Cow position: | chr17:27703443-27703050 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 346 |
| Conread position: | 120-878 |
| Cow position: | chr18:45582993-45583743 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 656 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 699, 623 |
| Conread position: | 471-748 |
| Cow position: | chr18:38987449-38987181 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 121-449 |
| Cow position: | chr19:47780029-47779706 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 470-854 |
| Cow position: | chr19:13447207-13446825 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 74 |
| Conread position: | 471-858 |
| Cow position: | chr19:29683898-29684272 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 473-857 |
| Cow position: | chr19:8517956-8518338 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 552-862 |
| Cow position: | chr19:47779703-47779414 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 552-869 |
| Cow position: | chr19:10101055-10100741 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 282-898 |
| Cow position: | chr2:43729955-43730522 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 17 |
| Conread position: | 416-868 |
| Cow position: | chr2:19056198-19056650 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 385 |
| Conread position: | 470-860 |
| Cow position: | chr2:61152357-61152732 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 471-860 |
| Cow position: | chr2:50609948-50610335 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 325 |
| Conread position: | 474-857 |
| Cow position: | chr2:67612017-67611622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 280 |
| Conread position: | 471-853 |
| Cow position: | chr21:22836863-22836480 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 203 |
| Conread position: | 153-855 |
| Cow position: | chr23:13842998-13842291 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 320 |
| Conread position: | 471-856 |
| Cow position: | chr24:28022880-28022494 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 273 |
| Conread position: | 471-891 |
| Cow position: | chr24:27083113-27083527 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 225 |
| Conread position: | 522-857 |
| Cow position: | chr24:2664499-2664178 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 67 |
| Conread position: | 471-670 |
| Cow position: | chr26:13267691-13267890 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-868 |
| Cow position: | chr26:13268241-13268459 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 470-864 |
| Cow position: | chr27:22541226-22541618 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 470-880 |
| Cow position: | chr27:24299411-24299818 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 336-850 |
| Cow position: | chr28:8130575-8130073 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 29 |
| Conread position: | 451-668 |
| Cow position: | chr29:8900934-8901144 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 673-853 |
| Cow position: | chr29:8901453-8901636 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 471-868 |
| Cow position: | chr3:18613480-18613874 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 472-853 |
| Cow position: | chr3:31406320-31405939 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 368 |
| Conread position: | 126-489 |
| Cow position: | chr4:57232855-57232500 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 514-892 |
| Cow position: | chr4:57232501-57232128 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 185 |
| Conread position: | 148-283 |
| Cow position: | chr5:57100864-57100729 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 367-746 |
| Cow position: | chr5:57100725-57100351 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 535-665 |
| Cow position: | chr5:57101060-57100929 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 471-807 |
| Cow position: | chr6:41927577-41927253 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 49 |
| Conread position: | 471-849 |
| Cow position: | chr6:54518159-54518546 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 227 |
| Conread position: | 471-798 |
| Cow position: | chr7:14275540-14275213 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-816 |
| Cow position: | chr7:10794798-10795135 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 471-855 |
| Cow position: | chr7:68498758-68498379 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 471-612 |
| Cow position: | chr8:32009702-32009834 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 471-903 |
| Cow position: | chr8:18941821-18942253 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 120 |
| Conread position: | 590-871 |
| Cow position: | chr8:32010610-32010890 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 186 |
| Conread position: | 120-897 |
| Cow position: | chr9:35096883-35097657 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 664 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 668, 0 |
| Conread position: | 471-840 |
| Cow position: | chr9:53317135-53316797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 473-856 |
| Cow position: | chr9:48554205-48553823 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 45 |
| Conread position: | 1-166 |
| Cow position: | chrX:14323731-14323570 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 134-895 |
| Cow position: | chrX:21811727-21812485 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 684 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 685, 654 |
| Conread position: | 222-344 |
| Cow position: | chrX:14322674-14322551 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 332-473 |
| Cow position: | chrX:14322365-14322224 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 471-635 |
| Cow position: | chrX:14321700-14321536 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 634-846 |
| Cow position: | chrX:14321457-14321248 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 154 |