Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F090002.5 |
| Conread position: | 49-899 |
| Cow position: | chr1:54458464-54457638 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 770 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 33-1060 |
| Cow position: | chr11:1692845-1691824 (view UCSC Genome Browser custom track) |
| Alignm length: | 1029 |
| Alignm identity: | 991 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 33 |
| Conread position: | 72-846 |
| Cow position: | chr11:44643446-44642679 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 673 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 110-538 |
| Cow position: | chr12:1670994-1670564 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 120-530 |
| Cow position: | chr12:1637590-1638000 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-530 |
| Cow position: | chr12:1660885-1660475 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-531 |
| Cow position: | chr14:9969894-9970305 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-102 |
| Cow position: | chr16:17443372-17443473 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-248 |
| Cow position: | chr16:17445040-17445192 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-402 |
| Cow position: | chr16:17446337-17446497 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-1050 |
| Cow position: | chr16:17450957-17451616 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 282 |
| Conread position: | 440-812 |
| Cow position: | chr17:24911921-24911572 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 863-1056 |
| Cow position: | chr17:24909869-24909688 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 10-899 |
| Cow position: | chr18:56466939-56466048 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 853 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 661 |
| Conread position: | 120-248 |
| Cow position: | chr19:49797048-49797176 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-531 |
| Cow position: | chr19:51023648-51023235 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 234-422 |
| Cow position: | chr19:49797277-49797466 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 378-531 |
| Cow position: | chr19:49797522-49797674 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 39-254 |
| Cow position: | chr2:39306992-39307186 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 303-583 |
| Cow position: | chr2:39307191-39307461 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 570-997 |
| Cow position: | chr2:39307478-39307904 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 3-563 |
| Cow position: | chr21:14501810-14502360 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 45 |
| Conread position: | 415-1046 |
| Cow position: | chr21:40434318-40433700 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 15 |
| Conread position: | 564-844 |
| Cow position: | chr21:14503004-14503283 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 860-1068 |
| Cow position: | chr21:14503271-14503479 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-530 |
| Cow position: | chr23:25811844-25812255 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-530 |
| Cow position: | chr23:25802332-25801922 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-536 |
| Cow position: | chr23:24195250-24194835 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 0 |
| Conread position: | 120-543 |
| Cow position: | chr23:25828832-25828410 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 896-1068 |
| Cow position: | chr24:26684490-26684322 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 447-1042 |
| Cow position: | chr28:28638240-28637682 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 6-290 |
| Cow position: | chr3:30493728-30493473 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 21-266 |
| Cow position: | chr3:68126197-68125959 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 115-531 |
| Cow position: | chr3:17643903-17644319 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-530 |
| Cow position: | chr3:62443787-62444202 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 117-531 |
| Cow position: | chr3:62481928-62482342 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-530 |
| Cow position: | chr3:62433160-62433570 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 267 |
| Conread position: | 120-533 |
| Cow position: | chr3:17612615-17612202 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-533 |
| Cow position: | chr3:17626402-17626815 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-827 |
| Cow position: | chr3:30493363-30492853 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 814-1057 |
| Cow position: | chr3:30492751-30492522 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 886-1068 |
| Cow position: | chr3:68124687-68124508 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 10-899 |
| Cow position: | chr4:10385105-10384223 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 854 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 0 |
| Conread position: | 426-900 |
| Cow position: | chr4:29336079-29336539 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 6-1057 |
| Cow position: | chr5:33725894-33724847 (view UCSC Genome Browser custom track) |
| Alignm length: | 1056 |
| Alignm identity: | 1006 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 146 |
| Conread position: | 18-899 |
| Cow position: | chr7:15736444-15737317 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 859 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 0 |
| Conread position: | 119-529 |
| Cow position: | chr7:968802-968392 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-413 |
| Cow position: | chr8:22900800-22901093 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 767-894 |
| Cow position: | chr8:24667704-24667830 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 509-957 |
| Cow position: | chr9:45757926-45758365 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 23 |