Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01F120059.5.5 |
| Conread position: | 379-555 |
| Cow position: | chr11:21613174-21613350 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-582 |
| Cow position: | chr11:15691793-15691596 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 383-504 |
| Cow position: | chr11:35785581-35785702 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-732 |
| Cow position: | chr11:35785581-35785702 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-783 |
| Cow position: | chr11:21613178-21613350 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-810 |
| Cow position: | chr11:15691789-15691596 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 839-960 |
| Cow position: | chr11:35785581-35785702 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 839-1011 |
| Cow position: | chr11:21613178-21613350 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 839-1038 |
| Cow position: | chr11:15691789-15691596 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 459-609 |
| Cow position: | chr12:462731-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 139 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 687-837 |
| Cow position: | chr12:462731-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 915-1148 |
| Cow position: | chr12:462731-462964 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 383-579 |
| Cow position: | chr16:55144561-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 611-807 |
| Cow position: | chr16:55144561-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 839-1035 |
| Cow position: | chr16:55144561-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 287-609 |
| Cow position: | chr17:27755438-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 370-1064 |
| Cow position: | chr17:26092516-26091823 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26091376-26090682 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26091604-26090910 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26091832-26091138 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26092060-26091366 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26092288-26091594 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26092744-26092050 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1065 |
| Cow position: | chr17:26092972-26092278 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 370-1078 |
| Cow position: | chr17:26091148-26090439 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 630 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 697, 14 |
| Conread position: | 382-1065 |
| Cow position: | chr17:26093189-26092506 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 485-609 |
| Cow position: | chr17:17083187-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-837 |
| Cow position: | chr17:27755532-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 711-837 |
| Cow position: | chr17:17083185-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 839-1233 |
| Cow position: | chr17:27755532-27755926 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 939-1226 |
| Cow position: | chr17:17083185-17083472 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 361-612 |
| Cow position: | chr18:4477939-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 585-840 |
| Cow position: | chr18:4477944-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 813-1065 |
| Cow position: | chr18:4477944-4477696 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-378 |
| Cow position: | chr19:23765826-23765450 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 104 |
| Conread position: | 370-1065 |
| Cow position: | chr19:23764704-23764009 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 663 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 383-1211 |
| Cow position: | chr19:23764463-23763635 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 784 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 983-1224 |
| Cow position: | chr22:1861465-1861706 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 363-601 |
| Cow position: | chr24:27055463-27055702 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 611-829 |
| Cow position: | chr24:27055483-27055702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 839-1066 |
| Cow position: | chr24:27055483-27055711 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 379-588 |
| Cow position: | chr26:15317980-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 611-816 |
| Cow position: | chr26:15317976-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 643-819 |
| Cow position: | chr26:15557822-15557661 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 839-1044 |
| Cow position: | chr26:15317976-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 871-1047 |
| Cow position: | chr26:15557822-15557661 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 379-591 |
| Cow position: | chr3:16890603-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-567 |
| Cow position: | chr3:32667831-32667980 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 611-819 |
| Cow position: | chr3:16890607-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 641-795 |
| Cow position: | chr3:32667831-32667980 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 839-1047 |
| Cow position: | chr3:16890607-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 869-1191 |
| Cow position: | chr3:32667831-32668131 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 383-486 |
| Cow position: | chr7:2025316-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 485-572 |
| Cow position: | chr7:2025689-2025776 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-714 |
| Cow position: | chr7:2025316-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 712-800 |
| Cow position: | chr7:2025688-2025776 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 839-942 |
| Cow position: | chr7:2025316-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1028 |
| Cow position: | chr7:2025688-2025776 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-608 |
| Cow position: | chr8:57981992-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 611-836 |
| Cow position: | chr8:57981996-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 839-1072 |
| Cow position: | chr8:57981996-57982228 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |