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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01G030010.5
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chr1:82879520-82879679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:41607131-41607295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:80968971-80968745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:31979256-31979023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:57357087-57357318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr1:70106572-70106338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:92708830-92709080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:66401825-66401580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:69239812-69240084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
13, 181
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:89938913-89939188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:22607476-22607747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:33914488-33914216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:57562659-57562930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:71086721-71086996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:6309615-6309338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:55114379-55114686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:23832340-23832655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:13992265-13992583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:31342520-31342829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr1:85001065-85000675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr1:30087164-30087552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 103
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:70099500-70099083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr1:65187473-65187894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
202, 11
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr1:40377809-40378036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:1777929-1778211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 103
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr1:93391698-93392069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
248, 10
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr1:89915563-89915959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:93441187-93440922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
12-377
               

               
Cow position:
               
chr1:8142700-8143072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 38
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr1:62197263-62197625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr1:72734336-72733940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
85, 93
               

               
Conread position:
               
13-228
               

               
Cow position:
               
chr1:26511982-26511765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 92
               

               
Conread position:
               
17-284
               

               
Cow position:
               
chr1:94761638-94761377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 78
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr1:86643330-86643010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
17-361
               

               
Cow position:
               
chr1:15984017-15983669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr1:81491172-81491541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
20-356
               

               
Cow position:
               
chr1:43588358-43588699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr1:82419428-82419657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 73
               

               
Conread position:
               
33-263
               

               
Cow position:
               
chr1:93549684-93549916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
33-406
               

               
Cow position:
               
chr1:100389096-100389465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
40-283
               

               
Cow position:
               
chr1:13575210-13574976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
117-313
               

               
Cow position:
               
chr1:23713870-23714071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
122-412
               

               
Cow position:
               
chr1:83321709-83321400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 118
               

               
Conread position:
               
148-317
               

               
Cow position:
               
chr1:82880860-82881024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
148-320
               

               
Cow position:
               
chr1:51533359-51533534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
441-656
               

               
Cow position:
               
chr1:39638335-39638109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
442-623
               

               
Cow position:
               
chr1:57563132-57563320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
442-666
               

               
Cow position:
               
chr1:58314088-58314314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
442-723
               

               
Cow position:
               
chr1:70106227-70105956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
442-723
               

               
Cow position:
               
chr1:93244985-93245275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
92, 136
               

               
Conread position:
               
447-638
               

               
Cow position:
               
chr1:89935694-89935888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
452-754
               

               
Cow position:
               
chr1:43378504-43378189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 252
               

               
Conread position:
               
456-670
               

               
Cow position:
               
chr1:28329518-28329300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 126
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr1:64754267-64754434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
873-1023
               

               
Cow position:
               
chr1:57563982-57564133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr10:47743637-47743414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr10:46080870-46080629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr10:58840391-58840634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr10:8094911-8095176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
202, 34
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr10:52670641-52670910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr10:30615768-30615491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr10:34730478-34730208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr10:55143336-55143056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 105
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr10:45039739-45040046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr10:57076920-57077228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 116
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr10:21373239-21372870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr10:15381295-15381685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
249, 16
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr10:51683667-51683265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr10:25502954-25503351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr10:19651738-19651322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
257, 52
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr10:16314659-16314527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr10:49647072-49647294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr10:65350070-65349710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr10:47231535-47231168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
9-275
               

               
Cow position:
               
chr10:55117977-55117712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr10:14424507-14424290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr10:39612319-39612058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
157, 39
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr10:3878097-3878467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
232, 66
               

               
Conread position:
               
13-283
               

               
Cow position:
               
chr10:55059487-55059225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
13-313
               

               
Cow position:
               
chr10:16741522-16741230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
134, 90
               

               
Conread position:
               
17-284
               

               
Cow position:
               
chr10:726362-726624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr10:54966742-54967098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
148-276
               

               
Cow position:
               
chr10:55103303-55103174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
437-723
               

               
Cow position:
               
chr10:42678445-42678175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr10:50702932-50703132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 159
               

               
Conread position:
               
442-675
               

               
Cow position:
               
chr10:52421178-52421411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 100
               

               
Conread position:
               
442-724
               

               
Cow position:
               
chr10:55305775-55306052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr10:33445528-33445821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
456-753
               

               
Cow position:
               
chr10:50565289-50565000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
61, 188
               

               
Conread position:
               
538-683
               

               
Cow position:
               
chr10:9116843-9116699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
859-1021
               

               
Cow position:
               
chr10:36760370-36760535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr10:55307866-55308019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr11:35576667-35576831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr11:20992466-20992254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr11:66869934-66869710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
172, 11
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr11:11684704-11684967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr11:39277137-39276866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr11:2894706-2894984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr11:33442658-33442380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr11:30216517-30216212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr11:14353599-14353242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr11:12167797-12167407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
256, 11
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr11:42119662-42119275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr11:63989075-63988681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr11:40366366-40366794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 213
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr11:8369140-8368723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
12, 208
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr11:81347623-81348009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr11:66033652-66033922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 8
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr11:12336181-12336442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
13-319
               

               
Cow position:
               
chr11:52364574-52364265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
17-237
               

               
Cow position:
               
chr11:70142935-70142718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
18-377
               

               
Cow position:
               
chr11:26305531-26305161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
39-354
               

               
Cow position:
               
chr11:66886079-66885753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 200
               

               
Conread position:
               
51-362
               

               
Cow position:
               
chr11:76870493-76870796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chr11:79710078-79709754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr11:8754979-8754668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
134-313
               

               
Cow position:
               
chr11:48888820-48889000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
420-755
               

               
Cow position:
               
chr11:7044926-7045267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr11:7051245-7051463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 139
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr11:8516157-8516383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
5, 140
               

               
Conread position:
               
442-715
               

               
Cow position:
               
chr11:8531494-8531212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
442-746
               

               
Cow position:
               
chr11:7067170-7067484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
442-927
               

               
Cow position:
               
chr11:72092736-72092246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 309
               

               
Conread position:
               
456-726
               

               
Cow position:
               
chr11:9740527-9740791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
474-720
               

               
Cow position:
               
chr11:9716153-9716400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
835-1023
               

               
Cow position:
               
chr11:9741475-9741660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
163, 76
               

               
Conread position:
               
858-1023
               

               
Cow position:
               
chr11:7051618-7051786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
863-1006
               

               
Cow position:
               
chr11:81832821-81832682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
863-1023
               

               
Cow position:
               
chr11:9727034-9727196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
872-1023
               

               
Cow position:
               
chr11:8516546-8516700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr12:8493823-8494033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr12:30446670-30446395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr12:4146469-4146153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr12:32339081-32339432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr12:36251306-36251661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr12:40080602-40080200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr12:39937159-39937606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
243, 11
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr12:30531562-30531941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr12:4540498-4540056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 123
               

               
Conread position:
               
13-274
               

               
Cow position:
               
chr12:7923339-7923591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
173, 22
               

               
Conread position:
               
14-276
               

               
Cow position:
               
chr12:1664581-1664839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
15-313
               

               
Cow position:
               
chr12:14548047-14548341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr12:26292876-26292639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
17-268
               

               
Cow position:
               
chr12:5250955-5251207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
21-229
               

               
Cow position:
               
chr12:39177852-39177645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
34-406
               

               
Cow position:
               
chr12:31016664-31017038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 106
               

               
Conread position:
               
81-265
               

               
Cow position:
               
chr12:28024873-28024688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
98-299
               

               
Cow position:
               
chr12:39940716-39940913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr12:39552077-39552273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 123
               

               
Conread position:
               
442-676
               

               
Cow position:
               
chr12:4540035-4539804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 165
               

               
Conread position:
               
442-754
               

               
Cow position:
               
chr12:21676543-21676215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
468-921
               

               
Cow position:
               
chr12:14354740-14354294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 190
               

               
Conread position:
               
859-1022
               

               
Cow position:
               
chr12:16892770-16892604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr12:39552459-39552625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
863-1008
               

               
Cow position:
               
chr12:4536410-4536264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr12:27134313-27134466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr13:38995395-38995516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr13:20460497-20460661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr13:13498659-13498433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:25343361-25343118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr13:22944438-22944681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr13:20268316-20268071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr13:48946239-48946004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr13:16810342-16810090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr13:17935863-17935608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr13:33006703-33006455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr13:52849933-52849685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr13:31437670-31437423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr13:27885412-27885143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr13:17580637-17580905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
78, 148
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr13:14610568-14610841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr13:19327764-19328034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr13:25347644-25347365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 105
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr13:15853293-15853532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr13:20821984-20821728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr13:25785745-25786013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 8
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr13:49624855-49625116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
15-274
               

               
Cow position:
               
chr13:52184389-52184131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
154, 95
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr13:20630852-20630480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 87
               

               
Conread position:
               
122-245
               

               
Cow position:
               
chr13:8966422-8966544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
152-286
               

               
Cow position:
               
chr13:50785000-50784866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
442-641
               

               
Cow position:
               
chr13:38018247-38018451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr13:55384169-55384460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
456-714
               

               
Cow position:
               
chr13:5245160-5245428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 190
               

               
Conread position:
               
456-726
               

               
Cow position:
               
chr13:50193646-50193912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
456-755
               

               
Cow position:
               
chr13:31491927-31491636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
573-755
               

               
Cow position:
               
chr13:30170384-30170200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
863-1022
               

               
Cow position:
               
chr13:43711527-43711366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr14:36328613-36328768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr14:46564525-46564685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr14:9580625-9580398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
116, 8
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr14:2326421-2326649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr14:20808053-20808308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr14:3926104-3925834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr14:43220133-43219876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr14:43375891-43375625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
104, 136
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr14:7116095-7115814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr14:35172933-35172660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr14:20883422-20883133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr14:36358042-36357729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr14:48580176-48579858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr14:23880303-23880619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr14:3168193-3168506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 83
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr14:32797563-32797874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr14:23149000-23148746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr14:33436219-33436483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr14:12676492-12676194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 139
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr14:26130721-26130525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
16-151
               

               
Cow position:
               
chr14:43200339-43200205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
29-260
               

               
Cow position:
               
chr14:3094572-3094804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
36-276
               

               
Cow position:
               
chr14:47151723-47151967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
140-406
               

               
Cow position:
               
chr14:33109998-33110256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
446-733
               

               
Cow position:
               
chr14:40036532-40036818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
489-706
               

               
Cow position:
               
chr14:35049714-35049929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
874-1023
               

               
Cow position:
               
chr14:1453298-1453153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr15:15632463-15632629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
133, 11
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr15:42833470-42833679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr15:37975261-37975492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr15:22516801-22516566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr15:16432137-16431897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr15:34170752-34170504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr15:18212671-18212919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr15:22548459-22548219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr15:22579576-22579312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:12799184-12799450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr15:47622993-47623268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr15:48107297-48107573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 102
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr15:6653705-6653987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr15:52822639-52822921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr15:29540003-29539702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
184, 46
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr15:40215558-40215162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr15:43654874-43655138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr15:26171274-26170850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 279
               

               
Conread position:
               
6-285
               

               
Cow position:
               
chr15:14088895-14088625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
157, 57
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr15:44999999-44999739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr15:28614354-28614603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr15:20128966-20129190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
442-683
               

               
Cow position:
               
chr15:13994387-13994147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
446-670
               

               
Cow position:
               
chr15:32432678-32432908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr15:20129344-20129509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
1-90
               

               
Cow position:
               
chr16:10629814-10629724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr16:16834083-16833857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr16:15257964-15258201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr16:11484454-11484696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr16:31529392-31529145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr16:24586600-24586855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr16:13924720-13924997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr16:33439216-33439485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
247, 8
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr16:50231290-50231007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr16:33872247-33871940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr16:52864147-52864476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr16:56079053-56078708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr16:40511622-40511244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr16:21725642-21726018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
249, 11
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr16:10337305-10337709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr16:14182918-14182680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr16:53495263-53495484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 87
               

               
Conread position:
               
17-259
               

               
Cow position:
               
chr16:34027981-34028221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr16:43860913-43861290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 86
               

               
Conread position:
               
18-220
               

               
Cow position:
               
chr16:54637676-54637479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
132-342
               

               
Cow position:
               
chr16:30577393-30577604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 90
               

               
Conread position:
               
150-406
               

               
Cow position:
               
chr16:10629699-10629438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
186-400
               

               
Cow position:
               
chr16:7391300-7391513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
436-755
               

               
Cow position:
               
chr16:23846896-23847226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
441-926
               

               
Cow position:
               
chr16:54637002-54636518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
103, 304
               

               
Conread position:
               
442-755
               

               
Cow position:
               
chr16:5650993-5650670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr16:13878090-13878323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr16:52619612-52619844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
449-726
               

               
Cow position:
               
chr16:412488-412777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
573-753
               

               
Cow position:
               
chr16:1411351-1411172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 64
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr16:3140505-3140671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
859-1029
               

               
Cow position:
               
chr16:412902-413079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 173
               

               
Conread position:
               
863-1023
               

               
Cow position:
               
chr16:1631181-1631019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr16:40412943-40412789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr17:25650476-25650726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr17:17298170-17297898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr17:21920656-21920925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr17:34377874-34377600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr17:4187398-4187105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr17:26615001-26615326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
111, 51
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr17:17939029-17938643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
253, 103
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr17:36204772-36204993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
208, 81
               

               
Conread position:
               
11-380
               

               
Cow position:
               
chr17:35448889-35449256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
218, 42
               

               
Conread position:
               
12-405
               

               
Cow position:
               
chr17:32148158-32147765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
17-281
               

               
Cow position:
               
chr17:11076125-11075864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 70
               

               
Conread position:
               
19-407
               

               
Cow position:
               
chr17:17073636-17073242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr17:32155134-32154894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
167, 50
               

               
Conread position:
               
24-278
               

               
Cow position:
               
chr17:5130-5374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
111-313
               

               
Cow position:
               
chr17:37707832-37707625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 172
               

               
Conread position:
               
126-301
               

               
Cow position:
               
chr17:37710854-37710678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
129-381
               

               
Cow position:
               
chr17:16952754-16953012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
60, 138
               

               
Conread position:
               
420-755
               

               
Cow position:
               
chr17:21840004-21839670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 205
               

               
Conread position:
               
550-677
               

               
Cow position:
               
chr17:4736909-4737038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr17:15918864-15918701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr18:36461507-36461369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr18:9017979-9017753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr18:52393012-52393283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr18:16065000-16064710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr18:4494712-4494976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
165, 36
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr18:25694465-25694077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 103
               

               
Conread position:
               
9-274
               

               
Cow position:
               
chr18:8691407-8691664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
11-286
               

               
Cow position:
               
chr18:49646523-49646787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
175, 16
               

               
Conread position:
               
15-274
               

               
Cow position:
               
chr18:21737062-21737315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr18:25700924-25700656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
19-278
               

               
Cow position:
               
chr18:35087276-35087024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr18:42808666-42809047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
23-252
               

               
Cow position:
               
chr18:13788525-13788295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 118
               

               
Conread position:
               
24-406
               

               
Cow position:
               
chr18:22418996-22418598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
42-306
               

               
Cow position:
               
chr18:13729837-13729582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
144, 71
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr18:50056523-50056750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
304-638
               

               
Cow position:
               
chr18:17800327-17799995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
859-1008
               

               
Cow position:
               
chr18:16053816-16053668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr18:43111423-43111593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
865-1023
               

               
Cow position:
               
chr18:32298025-32297868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr18:15939400-15939553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
874-1023
               

               
Cow position:
               
chr18:14075051-14074905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr19:33165376-33165545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr19:11433646-11433888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr19:10367378-10367132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr19:29957691-29957936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr19:9903961-9903687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
157, 50
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr19:11784094-11784368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr19:45590619-45590341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr19:16520262-16520673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr19:43238383-43238680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr19:7581803-7581396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
246, 100
               

               
Conread position:
               
9-265
               

               
Cow position:
               
chr19:7865744-7865487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
23-376
               

               
Cow position:
               
chr19:22166150-22165785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
29-281
               

               
Cow position:
               
chr19:51938808-51938560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
442-689
               

               
Cow position:
               
chr19:2075020-2075273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 93
               

               
Conread position:
               
442-859
               

               
Cow position:
               
chr19:28623493-28623059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
449-676
               

               
Cow position:
               
chr19:2679045-2678809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 228
               

               
Conread position:
               
859-1022
               

               
Cow position:
               
chr19:27833919-27834085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr19:13223619-13223781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr2:44687588-44687794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr2:86430720-86430524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr2:45933957-45934190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
136, 86
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr2:47149774-47150012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr2:12767942-12768189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr2:1479564-1479818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr2:36855462-36855207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr2:39549012-39548751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr2:48071246-48070972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr2:74811456-74811178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr2:20909085-20909354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr2:2400350-2400626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr2:24509048-24508775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr2:33512580-33512291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr2:17347543-17347244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
3-133
               

               
Cow position:
               
chr2:1093179-1093051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr2:72411479-72411690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr2:44972813-44972511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 5
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr2:40020971-40021413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
262, 64
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr2:81756458-81756164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr2:19150441-19150187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
159, 98
               

               
Conread position:
               
12-135
               

               
Cow position:
               
chr2:52865337-52865205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chr2:73750779-73751032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr2:37096895-37096598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
12-411
               

               
Cow position:
               
chr2:64154576-64154967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 65
               

               
Conread position:
               
12-412
               

               
Cow position:
               
chr2:68702421-68702812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 81
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr2:50965278-50965057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
17-208
               

               
Cow position:
               
chr2:36417422-36417232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr2:34293134-34292913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 77
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr2:23043307-23043531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
73, 87
               

               
Conread position:
               
17-309
               

               
Cow position:
               
chr2:39255422-39255129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
18-244
               

               
Cow position:
               
chr2:28918628-28918851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
18-246
               

               
Cow position:
               
chr2:49909046-49909267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
19-290
               

               
Cow position:
               
chr2:13332058-13332320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
39-309
               

               
Cow position:
               
chr2:64659825-64660102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr2:21724796-21725013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
92-313
               

               
Cow position:
               
chr2:37107205-37106984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
95-309
               

               
Cow position:
               
chr2:12301631-12301847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
113-269
               

               
Cow position:
               
chr2:27379658-27379815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr2:46923575-46923366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
116-268
               

               
Cow position:
               
chr2:19709829-19709675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
442-635
               

               
Cow position:
               
chr2:35971826-35972024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 137
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr2:7293055-7292859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr2:46772439-46772243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr2:82294594-82294869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
147, 40
               

               
Conread position:
               
443-677
               

               
Cow position:
               
chr2:68349633-68349400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
456-726
               

               
Cow position:
               
chr2:58461598-58461879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
456-726
               

               
Cow position:
               
chr2:83886574-83886311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 98
               

               
Conread position:
               
859-1004
               

               
Cow position:
               
chr2:45929536-45929683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr2:46772057-46771891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
864-1023
               

               
Cow position:
               
chr2:7292708-7292547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
867-1013
               

               
Cow position:
               
chr2:85995453-85995309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 44
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr2:82295495-82295648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
869-1023
               

               
Cow position:
               
chr2:35972218-35972383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr20:35434401-35434604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr20:36663892-36663670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr20:13083123-13083366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr20:36325731-36325978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr20:37910721-37911168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr20:13358215-13357951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 92
               

               
Conread position:
               
15-250
               

               
Cow position:
               
chr20:33667845-33667613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
26-376
               

               
Cow position:
               
chr20:35962345-35961993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 207
               

               
Conread position:
               
29-261
               

               
Cow position:
               
chr20:2885953-2885732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
34-269
               

               
Cow position:
               
chr20:12983847-12983614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr20:7274387-7274028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr20:26455449-26455227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
116-341
               

               
Cow position:
               
chr20:42739844-42739626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
148-405
               

               
Cow position:
               
chr20:38058755-38058494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
187-395
               

               
Cow position:
               
chr20:29876289-29876487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
441-702
               

               
Cow position:
               
chr20:33132465-33132210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
158, 104
               

               
Conread position:
               
541-709
               

               
Cow position:
               
chr20:22631255-22631428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
859-1021
               

               
Cow position:
               
chr20:22631574-22631739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
865-1023
               

               
Cow position:
               
chr20:39942180-39942025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr21:36209724-36209956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr21:22520289-22520521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr21:7402470-7402712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
132, 102
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr21:18485544-18485798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr21:47955690-47955428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr21:37260266-37260534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr21:42853406-42853683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr21:14787159-14787525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr21:19092318-19092700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr21:19866610-19866870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr21:32459748-32460012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr21:36210354-36210615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr21:35448698-35448309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
179, 39
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr21:32920154-32919904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 100
               

               
Conread position:
               
15-286
               

               
Cow position:
               
chr21:32040193-32040456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
154, 80
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr21:23236486-23236708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr21:13861262-13861039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
125, 86
               

               
Conread position:
               
30-281
               

               
Cow position:
               
chr21:17787947-17788198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 77
               

               
Conread position:
               
48-362
               

               
Cow position:
               
chr21:25564890-25564570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
91-298
               

               
Cow position:
               
chr21:17085324-17085531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 166
               

               
Conread position:
               
148-274
               

               
Cow position:
               
chr21:44558677-44558804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
442-637
               

               
Cow position:
               
chr21:47962413-47962212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 143
               

               
Conread position:
               
446-659
               

               
Cow position:
               
chr21:3475153-3474933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr21:41565820-41565587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
858-1023
               

               
Cow position:
               
chr21:47962028-47961853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr21:3474773-3474606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
863-1000
               

               
Cow position:
               
chr21:23237425-23237564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr22:17363047-17363287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr22:17310346-17310591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr22:19294911-19294633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr22:302665-302977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr22:39458863-39459278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr22:2013773-2013510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr22:32038102-32038366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chr22:6438234-6437924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr22:35459928-35460175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
16-281
               

               
Cow position:
               
chr22:13956176-13956435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr22:6702983-6702766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr22:2527064-2527294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 218
               

               
Conread position:
               
29-265
               

               
Cow position:
               
chr22:6044046-6044278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
158, 21
               

               
Conread position:
               
106-309
               

               
Cow position:
               
chr22:15432337-15432135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
80, 161
               

               
Conread position:
               
264-407
               

               
Cow position:
               
chr22:39462187-39462329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr22:8033809-8034090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr22:8034712-8034865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
871-1022
               

               
Cow position:
               
chr22:8122733-8122894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr23:23042375-23042579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr23:23087883-23088098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr23:23016418-23016642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr23:27028010-27028243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr23:20767223-20767483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr23:22874426-22874018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr23:33993396-33993673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
29-265
               

               
Cow position:
               
chr23:27918662-27918433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
56-259
               

               
Cow position:
               
chr23:40912836-40912635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
139-274
               

               
Cow position:
               
chr23:25649311-25649447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr23:2537656-2537861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr23:9727452-9727265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
149, 77
               

               
Conread position:
               
442-754
               

               
Cow position:
               
chr23:22245278-22245607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 130
               

               
Conread position:
               
446-647
               

               
Cow position:
               
chr23:12972760-12972971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr24:24646527-24646391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr24:24901728-24901979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr24:17972812-17973087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr24:2121390-2121114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr24:12297478-12297879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr24:26108256-26108653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 129
               

               
Conread position:
               
17-171
               

               
Cow position:
               
chr24:24646317-24646163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
25-409
               

               
Cow position:
               
chr24:32218233-32217853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 112
               

               
Conread position:
               
54-312
               

               
Cow position:
               
chr24:34188711-34188446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
91-317
               

               
Cow position:
               
chr24:18463709-18463933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
121-300
               

               
Cow position:
               
chr24:39171308-39171131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
124-409
               

               
Cow position:
               
chr24:223158-222874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr24:5917663-5917861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr24:5918042-5918209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr24:6088224-6088056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
863-1025
               

               
Cow position:
               
chr24:36835543-36835379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr25:15959645-15959833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr25:21516743-21516482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr25:35401408-35401089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr25:31617355-31616932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr25:26100262-26099989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr25:17374136-17374434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 10
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr25:15632252-15632412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr25:15914581-15914971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
13-309
               

               
Cow position:
               
chr25:41167556-41167851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
17-280
               

               
Cow position:
               
chr25:6261392-6261650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
34-381
               

               
Cow position:
               
chr25:15654160-15653805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
39-286
               

               
Cow position:
               
chr25:21517024-21516789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
149, 91
               

               
Conread position:
               
123-443
               

               
Cow position:
               
chr25:4506533-4506859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 266
               

               
Conread position:
               
304-636
               

               
Cow position:
               
chr25:19017688-19017343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
436-696
               

               
Cow position:
               
chr25:1036279-1036543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
441-634
               

               
Cow position:
               
chr25:479919-479720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr25:31368257-31368488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 31
               

               
Conread position:
               
859-1008
               

               
Cow position:
               
chr25:41329277-41329429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr26:11988977-11989142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr26:18490537-18490748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr26:18507876-18508087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr26:12220922-12220654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr26:17291238-17290834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr26:375749-376149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 104
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr26:10988874-10988467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 116
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr26:29764816-29764608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
89, 99
               

               
Conread position:
               
16-442
               

               
Cow position:
               
chr26:10984953-10985391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
17-624
               

               
Cow position:
               
chr26:10990657-10990030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 46
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr26:28459170-28458478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
26-406
               

               
Cow position:
               
chr26:8521628-8521988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 86
               

               
Conread position:
               
60-411
               

               
Cow position:
               
chr26:1987042-1986678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 205
               

               
Conread position:
               
307-675
               

               
Cow position:
               
chr26:12886268-12885876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr26:12885721-12885552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr27:7635886-7635741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr27:9503128-9503348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr27:23877377-23877615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr27:18673605-18673345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr27:14681314-14681039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chr27:30988453-30988182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 99
               

               
Conread position:
               
11-406
               

               
Cow position:
               
chr27:22125164-22125566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
232, 68
               

               
Conread position:
               
19-245
               

               
Cow position:
               
chr27:22803466-22803689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
137-320
               

               
Cow position:
               
chr27:7635547-7635361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
441-667
               

               
Cow position:
               
chr27:22123633-22123399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 149
               

               
Conread position:
               
442-683
               

               
Cow position:
               
chr27:28157553-28157308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
442-744
               

               
Cow position:
               
chr27:15907818-15908124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
859-999
               

               
Cow position:
               
chr27:24490247-24490388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr27:7598872-7598705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr27:15908939-15909106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
863-966
               

               
Cow position:
               
chr27:26179561-26179457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
867-1023
               

               
Cow position:
               
chr27:22556756-22556603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr28:6049404-6049636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:17527882-17528116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr28:33200892-33201157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr28:513516-513788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr28:23344249-23344527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr28:28731069-28730797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
1-726
               

               
Cow position:
               
chr28:3774360-3775103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr28:4567854-4567646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
9-313
               

               
Cow position:
               
chr28:11464395-11464091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 105
               

               
Conread position:
               
24-410
               

               
Cow position:
               
chr28:19380941-19381331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 121
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chr28:15724237-15724509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
51-401
               

               
Cow position:
               
chr28:28624883-28625246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr28:33914746-33915041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
442-733
               

               
Cow position:
               
chr28:74726-75012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr28:5341306-5341538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 138
               

               
Conread position:
               
461-723
               

               
Cow position:
               
chr28:18147494-18147758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
866-1022
               

               
Cow position:
               
chr28:34735464-34735306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
875-1023
               

               
Cow position:
               
chr28:33915309-33915459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr29:12897445-12897201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr29:313309-313044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr29:8941022-8940747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr29:40098082-40098373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr29:38262822-38263073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr29:18491621-18491777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
10-257
               

               
Cow position:
               
chr29:43152955-43153194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
176, 101
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr29:40567244-40566987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
17-319
               

               
Cow position:
               
chr29:30715152-30714850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
101, 170
               

               
Conread position:
               
49-444
               

               
Cow position:
               
chr29:28329555-28329954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
218, 65
               

               
Conread position:
               
273-409
               

               
Cow position:
               
chr29:22303897-22304032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
437-722
               

               
Cow position:
               
chr29:29452348-29452617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
854-1023
               

               
Cow position:
               
chr29:30692924-30693097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
863-1023
               

               
Cow position:
               
chr29:28330996-28331158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr3:53578276-53578437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr3:75097534-75097741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:16788808-16789019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:23846909-23846672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:24773376-24773144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr3:48037264-48037514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 102
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:22696601-22696866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr3:63998039-63998311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 131
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:36780552-36780824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr3:36783276-36783553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr3:48090957-48091229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
124, 8
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr3:78548680-78548953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr3:3794796-3795083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:5455339-5455652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr3:49006405-49006084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr3:24665803-24665486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
172, 49
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr3:5619485-5619100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 83
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:6190432-6190018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr3:19696695-19696538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr3:22702489-22702637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr3:28485647-28485408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
5-389
               

               
Cow position:
               
chr3:58307085-58306688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 117
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr3:63151947-63151676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr3:52852232-52851945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr3:61961990-61961689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 277
               

               
Conread position:
               
12-359
               

               
Cow position:
               
chr3:48573466-48573113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
13-409
               

               
Cow position:
               
chr3:33784004-33784385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 62
               

               
Conread position:
               
35-409
               

               
Cow position:
               
chr3:7814193-7814562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
65-321
               

               
Cow position:
               
chr3:25730612-25730357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
130-320
               

               
Cow position:
               
chr3:25695348-25695157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
50, 156
               

               
Conread position:
               
148-396
               

               
Cow position:
               
chr3:549144-548907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr3:541546-541357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr3:45838596-45838394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 140
               

               
Conread position:
               
442-666
               

               
Cow position:
               
chr3:25694997-25694770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr3:32168038-32167758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
442-733
               

               
Cow position:
               
chr3:25819946-25819647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
132, 114
               

               
Conread position:
               
443-675
               

               
Cow position:
               
chr3:39175101-39174875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
867-1024
               

               
Cow position:
               
chr3:39174227-39174071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr4:14479993-14480166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 87
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr4:34324091-34324308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 153
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr4:36494054-36494298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 88
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr4:13150705-13150458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr4:43420433-43420681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
247, 16
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr4:3901983-3901716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr4:37857168-37857438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr4:3464145-3463876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr4:18797396-18797670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 98
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr4:44086324-44086055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr4:60093726-60093997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr4:14422239-14422530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr4:12702241-12701934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr4:56263507-56263892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr4:28229979-28229578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr4:65944311-65944725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr4:59531958-59531716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
9-313
               

               
Cow position:
               
chr4:39086255-39086559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 180
               

               
Conread position:
               
11-276
               

               
Cow position:
               
chr4:59857896-59858150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 101
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr4:45451684-45451452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 75
               

               
Conread position:
               
17-377
               

               
Cow position:
               
chr4:10979959-10980325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
67-276
               

               
Cow position:
               
chr4:32843821-32844025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr4:3899422-3899216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
137-313
               

               
Cow position:
               
chr4:60499939-60499756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
148-307
               

               
Cow position:
               
chr4:25153236-25153080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
439-651
               

               
Cow position:
               
chr4:14947173-14946957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 205
               

               
Conread position:
               
442-633
               

               
Cow position:
               
chr4:14528601-14528798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
442-667
               

               
Cow position:
               
chr4:7140500-7140272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
442-689
               

               
Cow position:
               
chr4:28871655-28871909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
446-726
               

               
Cow position:
               
chr4:21870054-21870334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
144, 99
               

               
Conread position:
               
456-677
               

               
Cow position:
               
chr4:23122810-23123029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
468-659
               

               
Cow position:
               
chr4:5229043-5229240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr4:5229395-5229561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr4:57718040-57718212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr5:47233539-47233673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr5:39800946-39800784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr5:45198938-45198776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 11
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr5:66106493-66106652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr5:25896556-25896389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr5:29075821-29076074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr5:7394075-7393811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr5:17732099-17732354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr5:37371929-37372214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr5:47357678-47358030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr5:21042779-21043158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr5:7283924-7283544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr5:58439163-58439534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
11-276
               

               
Cow position:
               
chr5:20840290-20840551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
174, 103
               

               
Conread position:
               
12-274
               

               
Cow position:
               
chr5:8760812-8761067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr5:31512246-31511874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr5:71528006-71528395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
288, 114
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr5:66584303-66584704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 100
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr5:2188842-2188606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
13-301
               

               
Cow position:
               
chr5:8230535-8230823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
129, 122
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr5:45565294-45565033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
118, 7
               

               
Conread position:
               
15-378
               

               
Cow position:
               
chr5:68441503-68441863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
253, 19
               

               
Conread position:
               
16-444
               

               
Cow position:
               
chr5:53637956-53638388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
91-309
               

               
Cow position:
               
chr5:13458844-13458626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
127-313
               

               
Cow position:
               
chr5:47394593-47394776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr5:60277845-60278002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
182-407
               

               
Cow position:
               
chr5:32995630-32995395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 214
               

               
Conread position:
               
436-755
               

               
Cow position:
               
chr5:25445165-25445493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
442-636
               

               
Cow position:
               
chr5:21505059-21505255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
442-638
               

               
Cow position:
               
chr5:8764650-8764850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 141
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr5:47996137-47995912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 142
               

               
Conread position:
               
442-662
               

               
Cow position:
               
chr5:67098855-67099070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 112
               

               
Conread position:
               
442-668
               

               
Cow position:
               
chr5:53638409-53638631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
200, 99
               

               
Conread position:
               
458-641
               

               
Cow position:
               
chr5:15192144-15191951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 190
               

               
Conread position:
               
459-636
               

               
Cow position:
               
chr5:18657911-18658088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
460-636
               

               
Cow position:
               
chr5:24888965-24889148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr5:67099797-67099960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
863-1022
               

               
Cow position:
               
chr5:24889339-24889501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
863-1022
               

               
Cow position:
               
chr5:64041436-64041598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
871-997
               

               
Cow position:
               
chr5:69134003-69134130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr6:56911333-56911161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 107
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr6:60794711-60794928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr6:11177456-11177217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr6:2848820-2849073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
184, 49
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr6:69053810-69054083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr6:16548763-16549077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 220
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr6:37390052-37390435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
94, 103
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr6:61435992-61436376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:50265713-50266134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr6:47228586-47228823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr6:19353862-19353573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr6:29678739-29678988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr6:8018398-8018598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 99
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr6:32687898-32688156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
13-366
               

               
Cow position:
               
chr6:28598354-28598708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
15-269
               

               
Cow position:
               
chr6:35187769-35187530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
17-164
               

               
Cow position:
               
chr6:62994303-62994156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
33-411
               

               
Cow position:
               
chr6:38823639-38824028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 190
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr6:1572212-1572006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
114, 92
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr6:23900074-23900299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr6:45340362-45340547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr6:23900457-23900626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
863-1023
               

               
Cow position:
               
chr6:19404796-19404633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr7:161779-161617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 88
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr7:49093073-49093271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr7:30544954-30544718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr7:4948213-4948448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr7:38811264-38811020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr7:25828550-25828825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr7:50754958-50754688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr7:57380594-57380319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr7:63129613-63129309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr7:31005714-31006015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr7:55975288-55974937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr7:40900296-40899913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr7:8333005-8332628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr7:31108470-31108066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr7:23290590-23290996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr7:33509627-33509231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
5-258
               

               
Cow position:
               
chr7:13835382-13835135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
180, 7
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chr7:35445080-35445420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr7:41113691-41113974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
177, 92
               

               
Conread position:
               
10-274
               

               
Cow position:
               
chr7:26776495-26776235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr7:302917-302686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
174, 54
               

               
Conread position:
               
12-391
               

               
Cow position:
               
chr7:43277531-43277168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr7:41282228-41281829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
15-444
               

               
Cow position:
               
chr7:50589511-50589964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr7:44186411-44186628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
34-324
               

               
Cow position:
               
chr7:11880860-11881145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
63-310
               

               
Cow position:
               
chr7:2981870-2981625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
74-934
               

               
Cow position:
               
chr7:20872032-20871156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
907
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
133, 5
               

               
Conread position:
               
91-312
               

               
Cow position:
               
chr7:55778163-55778384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
21, 176
               

               
Conread position:
               
103-313
               

               
Cow position:
               
chr7:25124078-25123868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 164
               

               
Conread position:
               
436-726
               

               
Cow position:
               
chr7:27467192-27467488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
442-657
               

               
Cow position:
               
chr7:50589985-50590209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr7:18107586-18107362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 141
               

               
Conread position:
               
442-690
               

               
Cow position:
               
chr7:30544479-30544219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr7:42324967-42324684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 205
               

               
Conread position:
               
446-636
               

               
Cow position:
               
chr7:27115887-27115694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
448-675
               

               
Cow position:
               
chr7:28440808-28441039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 135
               

               
Conread position:
               
449-679
               

               
Cow position:
               
chr7:13800764-13800528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
93, 224
               

               
Conread position:
               
456-676
               

               
Cow position:
               
chr7:16140333-16140558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
538-706
               

               
Cow position:
               
chr7:64729565-64729735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
541-726
               

               
Cow position:
               
chr7:12453542-12453729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
859-1008
               

               
Cow position:
               
chr7:18310832-18310680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr7:3661516-3661350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr7:18107192-18107023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
864-1023
               

               
Cow position:
               
chr7:41116823-41116980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr8:3551941-3552102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr8:45965944-45966168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr8:9701721-9701473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr8:48454637-48454921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 115
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr8:6356948-6356640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr8:20660762-20661109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
184, 100
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr8:36296056-36296329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr8:61169063-61168857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr8:7419357-7419089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr8:49454474-49454771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr8:19024658-19025052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 99
               

               
Conread position:
               
15-267
               

               
Cow position:
               
chr8:51902892-51902633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr8:1103234-1103011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr8:25585272-25585050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr8:39880959-39880732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 86
               

               
Conread position:
               
18-246
               

               
Cow position:
               
chr8:40113985-40113758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 86
               

               
Conread position:
               
21-301
               

               
Cow position:
               
chr8:16231713-16231425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
25-252
               

               
Cow position:
               
chr8:14961433-14961214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
116-258
               

               
Cow position:
               
chr8:51519696-51519553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
193-406
               

               
Cow position:
               
chr8:19818345-19818554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
307-637
               

               
Cow position:
               
chr8:26079637-26079289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 146
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chr8:21986163-21985887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 112
               

               
Conread position:
               
446-649
               

               
Cow position:
               
chr8:37094920-37095127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
446-675
               

               
Cow position:
               
chr8:24566044-24565812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 131
               

               
Conread position:
               
859-1000
               

               
Cow position:
               
chr8:37095534-37095676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chr8:26828302-26828138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
867-1020
               

               
Cow position:
               
chr8:21985544-21985394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
871-967
               

               
Cow position:
               
chr8:26078590-26078493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:12637955-12638120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr9:15993021-15993248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr9:7615670-7615909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr9:7008649-7008899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:5701784-5701528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr9:42252408-42252663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:25032440-25032701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr9:28281934-28281662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr9:30200344-30199966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 88
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr9:36602779-36602415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr9:34047545-34047779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr9:8627594-8627323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr9:62925620-62925358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr9:9729647-9729858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 96
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr9:44917702-44917415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
9-407
               

               
Cow position:
               
chr9:25542950-25543331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr9:20984235-20983975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:22953319-22953575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 45
               

               
Conread position:
               
14-382
               

               
Cow position:
               
chr9:25436956-25437325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
17-286
               

               
Cow position:
               
chr9:3873400-3873658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
169, 54
               

               
Conread position:
               
17-351
               

               
Cow position:
               
chr9:4968651-4968310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
77-393
               

               
Cow position:
               
chr9:6317866-6317549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr9:49298165-49298358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
436-730
               

               
Cow position:
               
chr9:17990147-17990430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chr9:28535996-28535772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
443-706
               

               
Cow position:
               
chr9:22680426-22680691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
522-713
               

               
Cow position:
               
chr9:743522-743717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chrX:28698536-28698322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chrX:32979080-32978828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chrX:112553-112297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:30675108-30675376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 135
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chrX:42496704-42496970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
158, 102
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:21177641-21177892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:25435175-25434903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chrX:28042572-28042300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chrX:5414331-5414608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chrX:219969-219681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chrX:25306905-25306520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
253, 7
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chrX:15267473-15267233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
9-313
               

               
Cow position:
               
chrX:21424513-21424219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
12-228
               

               
Cow position:
               
chrX:19503227-19503441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
15-366
               

               
Cow position:
               
chrX:26352142-26352490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
134, 95
               

               
Conread position:
               
16-313
               

               
Cow position:
               
chrX:21464167-21464455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
33-265
               

               
Cow position:
               
chrX:1151408-1151630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
61-347
               

               
Cow position:
               
chrX:26272122-26272420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
185-309
               

               
Cow position:
               
chrX:15370071-15370192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
304-726
               

               
Cow position:
               
chrX:17791087-17790645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
428-675
               

               
Cow position:
               
chrX:31859603-31859855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
442-659
               

               
Cow position:
               
chrX:830830-830606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
442-675
               

               
Cow position:
               
chrX:42570366-42570127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
442-726
               

               
Cow position:
               
chrX:31204224-31204505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 113
               

               
Conread position:
               
446-636
               

               
Cow position:
               
chrX:26803276-26803470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 134
               

               
Conread position:
               
451-675
               

               
Cow position:
               
chrX:40598901-40599128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 131
               

               
Conread position:
               
453-723
               

               
Cow position:
               
chrX:42559887-42560158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
456-675
               

               
Cow position:
               
chrX:9514815-9514593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 126
               

               
Conread position:
               
456-724
               

               
Cow position:
               
chrX:42417242-42417502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
859-1023
               

               
Cow position:
               
chrX:830446-830279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
863-1023
               

               
Cow position:
               
chrX:31205150-31205313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
864-1021
               

               
Cow position:
               
chrX:42418111-42418266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
866-1022
               

               
Cow position:
               
chrX:17796827-17796669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
6, 40