Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G120094.5 |
| Conread position: | 53-431 |
| Cow position: | chr1:69374742-69374382 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 125-431 |
| Cow position: | chr1:30516494-30516800 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-434 |
| Cow position: | chr1:6621071-6621378 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 53-431 |
| Cow position: | chr10:15825821-15825443 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-436 |
| Cow position: | chr10:45269931-45270311 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 54-431 |
| Cow position: | chr10:69640061-69639687 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 53-431 |
| Cow position: | chr11:7724243-7724621 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-431 |
| Cow position: | chr11:43057929-43058304 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-431 |
| Cow position: | chr11:68582203-68581837 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-445 |
| Cow position: | chr11:82946816-82947134 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 320-431 |
| Cow position: | chr11:16255176-16255287 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-431 |
| Cow position: | chr12:1662187-1662574 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-431 |
| Cow position: | chr12:1673618-1673999 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr12:30861722-30861344 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-431 |
| Cow position: | chr12:1636194-1635810 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 53-340 |
| Cow position: | chr13:27850666-27850378 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 53-431 |
| Cow position: | chr13:7598936-7599308 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 53-431 |
| Cow position: | chr13:52263849-52263471 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-431 |
| Cow position: | chr13:42559945-42560045 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr15:11070395-11070017 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr15:35507082-35506718 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 68-431 |
| Cow position: | chr15:14106155-14106518 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-441 |
| Cow position: | chr15:46718117-46717875 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr16:49012025-49011647 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr16:49773480-49773858 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr16:52573338-52573715 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 53-431 |
| Cow position: | chr17:36084422-36084044 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr18:46143378-46143753 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 53-431 |
| Cow position: | chr19:6987697-6987323 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 53-431 |
| Cow position: | chr19:29154125-29154503 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr19:41835181-41834806 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 53-431 |
| Cow position: | chr2:58003332-58002957 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 224-431 |
| Cow position: | chr2:9225249-9225456 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr20:28491521-28491898 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 164-388 |
| Cow position: | chr20:5115426-5115650 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-431 |
| Cow position: | chr20:37397972-37397772 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-431 |
| Cow position: | chr22:41852829-41852452 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-431 |
| Cow position: | chr22:41962300-41962475 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 53-431 |
| Cow position: | chr23:24170542-24170920 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr23:24185732-24186110 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr23:24223257-24223635 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-441 |
| Cow position: | chr23:25804041-25804429 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 83-434 |
| Cow position: | chr23:26337828-26338178 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 86-431 |
| Cow position: | chr23:26341282-26340937 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-431 |
| Cow position: | chr23:35659464-35659653 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-431 |
| Cow position: | chr23:5740794-5740629 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-431 |
| Cow position: | chr24:40172648-40172989 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 339-431 |
| Cow position: | chr26:29165765-29165857 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-431 |
| Cow position: | chr27:26613731-26614085 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-431 |
| Cow position: | chr27:27865540-27865766 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-431 |
| Cow position: | chr28:27049907-27050045 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr29:1838846-1839224 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-541 |
| Cow position: | chr3:17614394-17614931 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 5-733 |
| Cow position: | chr3:17624802-17624091 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 41-434 |
| Cow position: | chr3:62431054-62430661 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-440 |
| Cow position: | chr3:62448575-62448965 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-429 |
| Cow position: | chr3:1077455-1077830 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 53-431 |
| Cow position: | chr3:62478430-62478052 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-434 |
| Cow position: | chr3:17645420-17645801 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-522 |
| Cow position: | chr3:62459268-62458805 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 383 |
| Conread position: | 53-541 |
| Cow position: | chr3:17591905-17592397 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 395 |
| Conread position: | 301-431 |
| Cow position: | chr3:56588624-56588752 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 53-431 |
| Cow position: | chr4:15925997-15925619 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 194-445 |
| Cow position: | chr4:64390607-64390858 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-431 |
| Cow position: | chr4:35724460-35724307 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 133 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr5:13917375-13916997 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-431 |
| Cow position: | chr5:31548158-31548530 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-431 |
| Cow position: | chr5:8026503-8026398 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr6:7483636-7484013 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 53-431 |
| Cow position: | chr6:39755834-39755456 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr6:39764559-39764181 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr6:56962170-56962549 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 83-431 |
| Cow position: | chr6:20715442-20715790 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-355 |
| Cow position: | chr6:37164862-37165011 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 134 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-434 |
| Cow position: | chr7:2957911-2958301 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chr7:13894776-13894398 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-272 |
| Cow position: | chr7:2968583-2968393 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 114, 51 |
| Conread position: | 194-431 |
| Cow position: | chr8:11335272-11335035 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-431 |
| Cow position: | chr8:36912090-36911919 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-431 |
| Cow position: | chr9:36521591-36521258 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-431 |
| Cow position: | chr9:35746073-35746314 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-431 |
| Cow position: | chrX:6377841-6378219 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-430 |
| Cow position: | chrX:15369275-15369613 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 159-431 |
| Cow position: | chrX:22916340-22916068 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-401 |
| Cow position: | chrX:16572722-16572502 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |