Cow genome map
| Conread name: | Ss1.1-Lym1-jns118_C06.f.5 |
| Conread position: | 9-334 |
| Cow position: | chr1:43452525-43452200 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-334 |
| Cow position: | chr1:57268051-57268365 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 263, 128 |
| Conread position: | 8-334 |
| Cow position: | chr10:27427394-27427716 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 75, 147 |
| Conread position: | 30-322 |
| Cow position: | chr10:49576720-49577014 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-516 |
| Cow position: | chr12:48464419-48464931 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 270 |
| Conread position: | 19-334 |
| Cow position: | chr12:36191063-36190748 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-334 |
| Cow position: | chr13:30334805-30335121 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 9-334 |
| Cow position: | chr13:57445660-57445985 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-337 |
| Cow position: | chr13:60611794-60612122 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-334 |
| Cow position: | chr14:40766369-40766139 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-516 |
| Cow position: | chr15:22547273-22546760 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 422 |
| Conread position: | 275-516 |
| Cow position: | chr15:24684581-24684828 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-334 |
| Cow position: | chr17:11243179-11242856 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 89 |
| Conread position: | 1-443 |
| Cow position: | chr17:18746082-18746524 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 422 |
| Conread position: | 1-447 |
| Cow position: | chr18:50298258-50298689 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 198-334 |
| Cow position: | chr18:48134299-48134435 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-516 |
| Cow position: | chr19:40287149-40287282 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 195-479 |
| Cow position: | chr20:38065786-38065503 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 153, 88 |
| Conread position: | 1-266 |
| Cow position: | chr21:30159934-30159677 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 19-334 |
| Cow position: | chr21:47003161-47002846 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-334 |
| Cow position: | chr23:22235840-22236155 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 175, 261 |
| Conread position: | 104-334 |
| Cow position: | chr28:25598671-25598447 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 10-334 |
| Cow position: | chr29:25664508-25664832 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-249 |
| Cow position: | chr29:14578214-14578417 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 67-200 |
| Cow position: | chr29:31525675-31525808 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-516 |
| Cow position: | chr29:31525900-31526218 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 227 |
| Conread position: | 1-423 |
| Cow position: | chr3:5120418-5119988 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 9-338 |
| Cow position: | chr3:75190256-75190585 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-334 |
| Cow position: | chr3:8194493-8194181 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 19-334 |
| Cow position: | chr3:16292228-16292542 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 19-334 |
| Cow position: | chr3:27171998-27171682 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 233 |
| Conread position: | 108-334 |
| Cow position: | chr3:43331452-43331226 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-319 |
| Cow position: | chr4:44409064-44408849 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-334 |
| Cow position: | chr5:62642782-62643014 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 188-516 |
| Cow position: | chr7:22824223-22824545 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 78 |
| Conread position: | 1-514 |
| Cow position: | chr9:42068303-42067787 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 10-334 |
| Cow position: | chr9:51909065-51908742 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 299-514 |
| Cow position: | chr9:16056757-16056974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 1-516 |
| Cow position: | chrX:17102087-17101574 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 422 |
| Conread position: | 28-446 |
| Cow position: | chrX:13392375-13391963 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 162 |