Cow genome map
| Conread name: | Ss1.1-Lym1-jns87_C09.f.5 |
| Conread position: | 109-423 |
| Cow position: | chr1:31527293-31526979 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-423 |
| Cow position: | chr1:31583466-31583152 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-423 |
| Cow position: | chr1:31577826-31577551 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 199, 204 |
| Conread position: | 149-423 |
| Cow position: | chr1:31603909-31603635 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 425-744 |
| Cow position: | chr1:31578953-31578634 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 749-1077 |
| Cow position: | chr1:31577855-31577526 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 778-1055 |
| Cow position: | chr1:31527254-31526977 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 778-1055 |
| Cow position: | chr1:31583427-31583150 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 202, 197 |
| Conread position: | 1089-1199 |
| Cow position: | chr1:31576822-31576712 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1196-1296 |
| Cow position: | chr1:31574984-31574884 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1357-1554 |
| Cow position: | chr1:31570489-31570297 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 48 |
| Conread position: | 100-423 |
| Cow position: | chr26:28139198-28138874 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 104-414 |
| Cow position: | chr26:35114883-35114575 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 109-423 |
| Cow position: | chr26:35110362-35110048 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-423 |
| Cow position: | chr26:28142766-28142451 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 254 |
| Conread position: | 122-423 |
| Cow position: | chr26:28111115-28110814 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 165, 151 |
| Conread position: | 125-423 |
| Cow position: | chr26:28152849-28152551 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 246, 241 |
| Conread position: | 128-321 |
| Cow position: | chr26:29301319-29301126 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 128-423 |
| Cow position: | chr26:28121390-28121095 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 158 |
| Conread position: | 128-423 |
| Cow position: | chr26:28363160-28362865 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 149-423 |
| Cow position: | chr26:28339043-28338769 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-423 |
| Cow position: | chr26:29303846-29303584 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 764-1055 |
| Cow position: | chr26:28115607-28115316 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 769-1055 |
| Cow position: | chr26:29303867-29303582 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 239, 7 |
| Conread position: | 770-939 |
| Cow position: | chr26:29301306-29301138 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 779-1055 |
| Cow position: | chr26:35114840-35114564 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 223 |
| Conread position: | 779-1061 |
| Cow position: | chr26:28339043-28338761 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 779-1073 |
| Cow position: | chr26:35110322-35110027 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 139, 134 |
| Conread position: | 785-1055 |
| Cow position: | chr26:28121363-28121093 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 785-1055 |
| Cow position: | chr26:28152819-28152549 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 190, 233 |
| Conread position: | 785-1055 |
| Cow position: | chr26:28363133-28362863 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 226, 233 |
| Conread position: | 785-1055 |
| Cow position: | chr29:28231353-28231086 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 103-423 |
| Cow position: | chr5:59793852-59793532 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-423 |
| Cow position: | chr5:59797101-59796781 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 181 |
| Conread position: | 103-423 |
| Cow position: | chr5:61296786-61297106 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-423 |
| Cow position: | chr5:59857531-59857215 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 292 |
| Conread position: | 109-423 |
| Cow position: | chr5:61246358-61246672 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:59775597-59775293 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:59812982-59812678 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61228371-61228675 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61237393-61237697 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61306137-61306441 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-430 |
| Cow position: | chr5:61285749-61286059 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 155-423 |
| Cow position: | chr5:61248731-61248999 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-423 |
| Cow position: | chr5:61308490-61308758 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 755-1053 |
| Cow position: | chr5:61248701-61248999 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 242 |
| Conread position: | 764-1053 |
| Cow position: | chr5:59852980-59852697 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 764-1055 |
| Cow position: | chr5:61306152-61306443 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 154 |
| Conread position: | 766-1053 |
| Cow position: | chr5:61308471-61308758 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 231 |
| Conread position: | 779-1055 |
| Cow position: | chr5:59793806-59793530 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 779-1055 |
| Cow position: | chr5:59797055-59796779 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 229, 237 |
| Conread position: | 783-1055 |
| Cow position: | chr5:61246402-61246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 135 |
| Conread position: | 783-1055 |
| Cow position: | chr5:61285783-61286055 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 116, 135 |
| Conread position: | 791-1055 |
| Cow position: | chr5:59775555-59775291 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:59812940-59812676 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:61228413-61228677 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:61296844-61297108 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 204, 225 |