Cow genome map
| Conread name: | Ss1.1-Lym2-sn53_A09.f.5 |
| Conread position: | 21-344 |
| Cow position: | chr1:43452525-43452202 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-334 |
| Cow position: | chr1:57268051-57268353 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 263, 128 |
| Conread position: | 20-339 |
| Cow position: | chr10:27427394-27427709 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 147 |
| Conread position: | 42-334 |
| Cow position: | chr10:49576720-49577014 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 117-328 |
| Cow position: | chr11:8088669-8088457 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 1-528 |
| Cow position: | chr12:48464407-48464931 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 282 |
| Conread position: | 31-344 |
| Cow position: | chr12:36191063-36190750 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-348 |
| Cow position: | chr13:60611776-60612122 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 21-344 |
| Cow position: | chr13:30334805-30335119 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 21-344 |
| Cow position: | chr13:57445660-57445983 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-344 |
| Cow position: | chr14:40766390-40766141 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 26 |
| Conread position: | 1-528 |
| Cow position: | chr15:22547285-22546760 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 434 |
| Conread position: | 287-528 |
| Cow position: | chr15:24684581-24684828 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-455 |
| Cow position: | chr17:18746070-18746524 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 434 |
| Conread position: | 3-344 |
| Cow position: | chr17:11243189-11242858 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 98 |
| Conread position: | 6-459 |
| Cow position: | chr18:50298250-50298689 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 31-361 |
| Cow position: | chr18:48797400-48797067 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 103 |
| Conread position: | 392-528 |
| Cow position: | chr19:40287149-40287282 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 207-491 |
| Cow position: | chr20:38065786-38065503 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 153, 88 |
| Conread position: | 2-278 |
| Cow position: | chr21:30159945-30159677 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 31-344 |
| Cow position: | chr21:47003161-47002848 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-344 |
| Cow position: | chr23:22235840-22236153 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 175, 261 |
| Conread position: | 22-331 |
| Cow position: | chr24:27204033-27204342 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 189 |
| Conread position: | 22-339 |
| Cow position: | chr28:25598761-25598454 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-80 |
| Cow position: | chr29:31525308-31525387 (view UCSC Genome Browser custom track) |
| Alignm length: | 80 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-344 |
| Cow position: | chr29:25664508-25664830 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-261 |
| Cow position: | chr29:14578214-14578417 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 79-212 |
| Cow position: | chr29:31525675-31525808 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 208-528 |
| Cow position: | chr29:31525900-31526218 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 227 |
| Conread position: | 1-350 |
| Cow position: | chr3:75190236-75190585 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 2-435 |
| Cow position: | chr3:5120429-5119988 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 3-339 |
| Cow position: | chr3:43331569-43331233 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-344 |
| Cow position: | chr3:8194493-8194183 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 31-344 |
| Cow position: | chr3:16292228-16292540 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 31-346 |
| Cow position: | chr3:27171998-27171681 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 22-331 |
| Cow position: | chr4:44409158-44408849 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 113-344 |
| Cow position: | chr5:62642782-62643012 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 200-528 |
| Cow position: | chr7:22824223-22824544 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 78 |
| Conread position: | 1-524 |
| Cow position: | chr9:42068315-42067789 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 3-339 |
| Cow position: | chr9:51909084-51908749 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 311-520 |
| Cow position: | chr9:16056757-16056969 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 1-528 |
| Cow position: | chrX:17102099-17101574 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 434 |
| Conread position: | 40-368 |
| Cow position: | chrX:13392375-13392042 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 162 |