Cow genome map
| Conread name: | Ss1.1-Mixc-0029,k12.3 |
| Conread position: | 33-636 |
| Cow position: | chr14:680618-681221 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 361 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 39-582 |
| Cow position: | chr14:3080865-3080322 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 44-592 |
| Cow position: | chr14:433797-434344 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 245, 19 |
| Conread position: | 60-601 |
| Cow position: | chr14:3061487-3060946 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 60-629 |
| Cow position: | chr14:25895536-25896105 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 70-589 |
| Cow position: | chr14:25895882-25896401 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 114 |
| Conread position: | 70-592 |
| Cow position: | chr14:3128094-3127572 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 75-580 |
| Cow position: | chr14:3128005-3127500 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 376, 404 |
| Conread position: | 84-601 |
| Cow position: | chr14:25895476-25895993 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 312 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 84-635 |
| Cow position: | chr14:3080484-3079933 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 343 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 101, 112 |
| Conread position: | 112-601 |
| Cow position: | chr14:3061687-3061198 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 299 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 122-629 |
| Cow position: | chr14:25895094-25895601 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 357, 353 |
| Conread position: | 122-638 |
| Cow position: | chr14:3061341-3060825 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 210, 214 |
| Conread position: | 123-617 |
| Cow position: | chr14:680372-680866 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 133-440 |
| Cow position: | chr14:434053-434360 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 135-575 |
| Cow position: | chr14:3080181-3079741 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 1-110 |
| Cow position: | chr16:36865214-36865105 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 860-1248 |
| Cow position: | chr16:36862785-36862405 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 10-428 |
| Cow position: | chr17:41440667-41440249 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 175, 190 |
| Conread position: | 36-592 |
| Cow position: | chr17:41441061-41440505 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 150, 162 |
| Conread position: | 84-606 |
| Cow position: | chr17:44467718-44468240 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 115 |
| Conread position: | 84-619 |
| Cow position: | chr17:41441097-41440562 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 101, 114 |
| Conread position: | 114-592 |
| Cow position: | chr17:44467832-44468310 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 142, 159 |
| Conread position: | 132-592 |
| Cow position: | chr17:41440797-41440337 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 142-592 |
| Cow position: | chr17:41441123-41440673 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 146-601 |
| Cow position: | chr17:44467360-44467815 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 223-606 |
| Cow position: | chr17:44467352-44467736 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 39-428 |
| Cow position: | chr18:55497472-55497083 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 39-592 |
| Cow position: | chr18:56330037-56329484 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 403, 444 |
| Conread position: | 39-606 |
| Cow position: | chr18:56329701-56329134 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 146, 159 |
| Conread position: | 70-606 |
| Cow position: | chr18:56128218-56128753 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 138 |
| Conread position: | 70-608 |
| Cow position: | chr18:55497693-55497155 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 73-428 |
| Cow position: | chr18:56316569-56316924 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 74-606 |
| Cow position: | chr18:56391414-56390882 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 125, 113 |
| Conread position: | 75-582 |
| Cow position: | chr18:47846583-47846076 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 131-607 |
| Cow position: | chr18:53610393-53609917 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 132-607 |
| Cow position: | chr18:53635717-53635242 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 216-592 |
| Cow position: | chr18:52012284-52011908 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 223, 269 |
| Conread position: | 223-461 |
| Cow position: | chr18:54687740-54687978 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 63-520 |
| Cow position: | chr20:6660982-6660525 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 135 |
| Conread position: | 38-620 |
| Cow position: | chr21:12658895-12659477 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 39-606 |
| Cow position: | chr21:12659148-12659715 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 146, 154 |
| Conread position: | 39-620 |
| Cow position: | chr21:12659232-12659813 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 354 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 47-434 |
| Cow position: | chr21:12659492-12659879 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 336, 312 |
| Conread position: | 50-592 |
| Cow position: | chr21:12658987-12659533 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 147 |
| Conread position: | 34-440 |
| Cow position: | chr25:25652330-25652736 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 151, 160 |
| Conread position: | 34-592 |
| Cow position: | chr25:25652414-25652972 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 97 |
| Conread position: | 36-350 |
| Cow position: | chr25:3636334-3636020 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 39-607 |
| Cow position: | chr25:25652587-25653155 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 146, 158 |
| Conread position: | 58-434 |
| Cow position: | chr25:3675990-3676366 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 207, 199 |
| Conread position: | 69-434 |
| Cow position: | chr25:4657456-4657091 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 138, 119 |
| Conread position: | 71-557 |
| Cow position: | chr25:25652871-25653357 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 122 |
| Conread position: | 75-434 |
| Cow position: | chr25:3636379-3636020 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 112-659 |
| Cow position: | chr25:33530281-33530825 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 308, 303 |
| Conread position: | 123-636 |
| Cow position: | chr25:3664078-3664591 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 134-601 |
| Cow position: | chr25:24385258-24384791 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 155 |
| Conread position: | 140-636 |
| Cow position: | chr25:25652184-25652680 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 142, 138 |
| Conread position: | 144-434 |
| Cow position: | chr25:33506748-33507038 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 196-601 |
| Cow position: | chr25:33530197-33530602 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 82 |
| Conread position: | 38-619 |
| Cow position: | chr28:34695974-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 301-633 |
| Cow position: | chr28:34696069-34696401 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 184, 174 |
| Conread position: | 143-434 |
| Cow position: | chr3:20194973-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 159-601 |
| Cow position: | chr4:65703652-65703210 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 38-653 |
| Cow position: | chr6:49428374-49428986 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 378 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 47-590 |
| Cow position: | chr6:49428551-49429094 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 50-629 |
| Cow position: | chr6:49428470-49429049 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 353 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 59-592 |
| Cow position: | chr6:49428731-49429264 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 126, 139 |
| Conread position: | 70-428 |
| Cow position: | chr6:49428910-49429268 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 198, 211 |
| Conread position: | 74-601 |
| Cow position: | chr6:49428242-49428769 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 124 |
| Conread position: | 74-606 |
| Cow position: | chr6:49428326-49428858 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 158-621 |
| Cow position: | chr6:49428242-49428705 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 148-576 |
| Cow position: | chr7:12293268-12293696 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 131-518 |
| Cow position: | chrX:14181403-14181016 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 67 |