Cow genome map

Conread name: Ss1.1-Mixc-0029b12.3

Conread position: 13-407
Cow position: chr1:69374760-69374382 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 124

Conread position: 101-407
Cow position: chr1:30516494-30516800 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 109-410
Cow position: chr1:6621071-6621378 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 179

Conread position: 13-407
Cow position: chr10:15825839-15825443 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr10:69640080-69639687 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 269

Conread position: 29-412
Cow position: chr10:45269931-45270311 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 13-407
Cow position: chr11:7724225-7724621 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr11:43057908-43058304 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 41-407
Cow position: chr11:68582203-68581837 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 109-421
Cow position: chr11:82946816-82947134 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 179

Conread position: 296-407
Cow position: chr11:16255176-16255287 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 102
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr12:30861740-30861344 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 22-407
Cow position: chr12:1662189-1662574 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-407
Cow position: chr12:1673621-1673999 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-407
Cow position: chr12:1636169-1635810 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 0

Conread position: 1-1186
Cow position: chr13:27850696-27849508 (view UCSC Genome Browser custom track)
Alignm length: 1189
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 13-407
Cow position: chr13:7598918-7599308 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 91

Conread position: 13-407
Cow position: chr13:52263867-52263471 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 307-407
Cow position: chr13:42559945-42560045 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 90
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr15:11070413-11070017 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr15:35507100-35506718 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 249

Conread position: 44-407
Cow position: chr15:14106155-14106518 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 175-417
Cow position: chr15:46718117-46717875 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr16:49012043-49011647 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr16:52573320-52573715 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 94

Conread position: 29-407
Cow position: chr16:49773480-49773858 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr17:36084440-36084044 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr18:46143360-46143753 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 91

Conread position: 13-407
Cow position: chr19:29154107-29154503 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 13-407
Cow position: chr19:41835199-41834806 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 221

Conread position: 29-407
Cow position: chr19:6987697-6987323 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 14-407
Cow position: chr2:58003349-58002957 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 213

Conread position: 200-407
Cow position: chr2:9225249-9225456 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr20:28491503-28491898 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 54

Conread position: 140-363
Cow position: chr20:5115426-5115649 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 144
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 207-407
Cow position: chr20:37397972-37397772 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-407
Cow position: chr22:41852845-41852452 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 236-407
Cow position: chr22:41962300-41962475 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 148
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 80, 0

Conread position: 13-407
Cow position: chr23:26341335-26340937 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 21-407
Cow position: chr23:24223249-24223635 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-407
Cow position: chr23:24185728-24186110 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 26-417
Cow position: chr23:25804038-25804429 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-407
Cow position: chr23:24170542-24170920 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 59-410
Cow position: chr23:26337828-26338178 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 218-407
Cow position: chr23:35659464-35659653 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 242-407
Cow position: chr23:5740794-5740629 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 145
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 66-407
Cow position: chr24:40172648-40172989 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 315-407
Cow position: chr26:29165765-29165857 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 52-407
Cow position: chr27:26613730-26614085 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 181-407
Cow position: chr27:27865540-27865766 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 269-407
Cow position: chr28:27049907-27050045 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 120
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr29:1838828-1839224 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 3-1051
Cow position: chr3:17591881-17592903 (view UCSC Genome Browser custom track)
Alignm length: 1058
Alignm identity: 891
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 19

Conread position: 13-405
Cow position: chr3:1077437-1077830 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 215

Conread position: 14-424
Cow position: chr3:17645404-17645816 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 25-407
Cow position: chr3:62478434-62478052 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-410
Cow position: chr3:62431042-62430661 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-416
Cow position: chr3:62448578-62448965 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-484
Cow position: chr3:62459268-62458820 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 0

Conread position: 29-498
Cow position: chr3:17614442-17614912 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 0

Conread position: 29-498
Cow position: chr3:17624754-17624284 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 0

Conread position: 277-407
Cow position: chr3:56588624-56588752 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 114
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 1050-1811
Cow position: chr3:17592931-17593727 (view UCSC Genome Browser custom track)
Alignm length: 817
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 169

Conread position: 1797-2174
Cow position: chr3:17593823-17594198 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 45

Conread position: 13-407
Cow position: chr4:15926015-15925619 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 170-421
Cow position: chr4:64390607-64390858 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 254-407
Cow position: chr4:35724460-35724307 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 132
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr5:13917393-13916997 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 35-407
Cow position: chr5:31548158-31548530 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 302-407
Cow position: chr5:8026503-8026398 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr6:56962152-56962549 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 18-407
Cow position: chr6:39755845-39755456 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 26-407
Cow position: chr6:39764562-39764181 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-407
Cow position: chr6:7483636-7484013 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 59-407
Cow position: chr6:20715442-20715790 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 182-331
Cow position: chr6:37164862-37165011 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 134
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chr7:13894794-13894398 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 29-410
Cow position: chr7:2957920-2958301 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 57-248
Cow position: chr7:2968580-2968393 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 111, 48

Conread position: 170-407
Cow position: chr8:11335272-11335035 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 236-407
Cow position: chr8:36912090-36911919 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 146
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-407
Cow position: chr9:36521591-36521258 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 166-407
Cow position: chr9:35746073-35746314 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position: chrX:6377823-6378219 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 61-406
Cow position: chrX:15369275-15369613 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 226
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 47

Conread position: 135-407
Cow position: chrX:22916340-22916068 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 157-384
Cow position: chrX:16572722-16572495 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0