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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0037,b17.5
        

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:1999585-1999380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
1-852
               

               
Cow position:
               
chr1:2000257-1999406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
812
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-837
               

               
Cow position:
               
chr1:2000258-1999505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
397, 418
               

               
Conread position:
               
8-481
               

               
Cow position:
               
chr10:21939158-21938687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
267, 273
               

               
Conread position:
               
19-747
               

               
Cow position:
               
chr10:9010559-9009831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
367, 382
               

               
Conread position:
               
23-557
               

               
Cow position:
               
chr10:21939227-21938695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
211, 200
               

               
Conread position:
               
28-480
               

               
Cow position:
               
chr10:8996486-8996034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr10:8996570-8996041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr10:8996654-8996125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-718
               

               
Cow position:
               
chr10:8996738-8996048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
66-809
               

               
Cow position:
               
chr10:8996784-8996041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 338
               

               
Conread position:
               
67-760
               

               
Cow position:
               
chr10:21939337-21938660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
520, 113
               

               
Conread position:
               
111-798
               

               
Cow position:
               
chr10:9010551-9009864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
165, 169
               

               
Conread position:
               
136-837
               

               
Cow position:
               
chr10:8996882-8996181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
451, 464
               

               
Conread position:
               
280-837
               

               
Cow position:
               
chr10:21939376-21938833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
314, 154
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr11:50368520-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-462
               

               
Cow position:
               
chr11:74554680-74554227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-360
               

               
Cow position:
               
chr11:50368592-50368248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
327, 0
               

               
Conread position:
               
27-546
               

               
Cow position:
               
chr11:74554746-74554227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr11:74555081-74554272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-839
               

               
Cow position:
               
chr11:74554997-74554186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
90-827
               

               
Cow position:
               
chr11:74555103-74554366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 350
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr11:50368591-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
109, 114
               

               
Conread position:
               
177-837
               

               
Cow position:
               
chr11:74555100-74554440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
410, 423
               

               
Conread position:
               
196-500
               

               
Cow position:
               
chr11:50368582-50368278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
198, 184
               

               
Conread position:
               
280-557
               

               
Cow position:
               
chr11:50368582-50368305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
184, 197
               

               
Conread position:
               
353-696
               

               
Cow position:
               
chr11:50368593-50368248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
234, 247
               

               
Conread position:
               
437-757
               

               
Cow position:
               
chr11:50368593-50368273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr13:22124765-22125593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
832
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr13:24162491-24163319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
833
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
19-367
               

               
Cow position:
               
chr13:39930830-39931176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
19-431
               

               
Cow position:
               
chr13:39930746-39931156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr13:39984334-39984777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-489
               

               
Cow position:
               
chr13:39930662-39931132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
19-824
               

               
Cow position:
               
chr13:22125111-22125916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 218
               

               
Conread position:
               
19-824
               

               
Cow position:
               
chr13:24162837-24163642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 218
               

               
Conread position:
               
19-837
               

               
Cow position:
               
chr13:24162585-24163403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
824
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 105
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr13:24162762-24163571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
510, 515
               

               
Conread position:
               
38-718
               

               
Cow position:
               
chr13:24162940-24163620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 267
               

               
Conread position:
               
57-841
               

               
Cow position:
               
chr13:22124729-22125513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 85
               

               
Conread position:
               
57-841
               

               
Cow position:
               
chr13:24162455-24163239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
790
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 85
               

               
Conread position:
               
68-553
               

               
Cow position:
               
chr13:39930627-39931112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
140-837
               

               
Cow position:
               
chr13:24162454-24163151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
146, 165
               

               
Conread position:
               
142-677
               

               
Cow position:
               
chr13:39930617-39931152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
224-837
               

               
Cow position:
               
chr13:22124728-22125341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
236-787
               

               
Cow position:
               
chr13:39930627-39931176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
308-840
               

               
Cow position:
               
chr13:22124728-22125260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
228, 235
               

               
Conread position:
               
308-840
               

               
Cow position:
               
chr13:24162454-24162986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
228, 235
               

               
Conread position:
               
320-837
               

               
Cow position:
               
chr13:39930627-39931144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
267, 280
               

               
Conread position:
               
361-837
               

               
Cow position:
               
chr13:22124697-22125173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 118
               

               
Conread position:
               
361-837
               

               
Cow position:
               
chr13:24162423-24162899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 118
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr14:663487-663064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
224, 14
               

               
Conread position:
               
1-755
               

               
Cow position:
               
chr14:3061406-3060652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 138
               

               
Conread position:
               
6-480
               

               
Cow position:
               
chr14:680815-681288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 219
               

               
Conread position:
               
6-692
               

               
Cow position:
               
chr14:680563-681249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
460, 451
               

               
Conread position:
               
6-752
               

               
Cow position:
               
chr14:447509-448255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 310
               

               
Conread position:
               
8-837
               

               
Cow position:
               
chr14:3080504-3079675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 208
               

               
Conread position:
               
8-844
               

               
Cow position:
               
chr14:3061651-3060815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
586, 592
               

               
Conread position:
               
8-850
               

               
Cow position:
               
chr14:3061735-3060893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
846
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
536, 531
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr14:3127511-3127260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
241, 0
               

               
Conread position:
               
9-427
               

               
Cow position:
               
chr14:25895961-25896379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 128
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr14:433901-434381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
392, 382
               

               
Conread position:
               
9-557
               

               
Cow position:
               
chr14:433817-434365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
394, 388
               

               
Conread position:
               
9-660
               

               
Cow position:
               
chr14:3127931-3127280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
462, 449
               

               
Conread position:
               
9-762
               

               
Cow position:
               
chr14:3080419-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 181
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr14:25895457-25896285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 181
               

               
Conread position:
               
10-844
               

               
Cow position:
               
chr14:25895038-25895872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
840
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 221
               

               
Conread position:
               
11-850
               

               
Cow position:
               
chr14:680232-681071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
842
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
576, 589
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr14:25895882-25896342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
14-557
               

               
Cow position:
               
chr14:25836647-25837190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
14-815
               

               
Cow position:
               
chr14:25876501-25877300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
544, 17
               

               
Conread position:
               
14-841
               

               
Cow position:
               
chr14:25894958-25895785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
832
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 203
               

               
Conread position:
               
15-841
               

               
Cow position:
               
chr14:3081001-3080175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 103
               

               
Conread position:
               
18-250
               

               
Cow position:
               
chr14:434162-434394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-342
               

               
Cow position:
               
chr14:434079-434402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 261
               

               
Conread position:
               
19-803
               

               
Cow position:
               
chr14:25895551-25896335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 199
               

               
Conread position:
               
27-333
               

               
Cow position:
               
chr14:3127577-3127271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-334
               

               
Cow position:
               
chr14:3156175-3156482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-841
               

               
Cow position:
               
chr14:25895391-25896207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
822
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 107
               

               
Conread position:
               
27-844
               

               
Cow position:
               
chr14:3080653-3079836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 194
               

               
Conread position:
               
27-844
               

               
Cow position:
               
chr14:3155518-3156320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
822
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 194
               

               
Conread position:
               
28-419
               

               
Cow position:
               
chr14:3156092-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr14:3155924-3156453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-761
               

               
Cow position:
               
chr14:3127996-3127263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 412
               

               
Conread position:
               
28-798
               

               
Cow position:
               
chr14:680501-681271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 201
               

               
Conread position:
               
28-812
               

               
Cow position:
               
chr14:25835737-25836521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
28-815
               

               
Cow position:
               
chr14:25859966-25860753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
28-827
               

               
Cow position:
               
chr14:25876681-25877480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr14:3061463-3060663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 191
               

               
Conread position:
               
28-832
               

               
Cow position:
               
chr14:3155435-3156224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 277
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:3080736-3079927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
416, 405
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:3080820-3080011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
447, 451
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:3128080-3127271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:3128164-3127355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
509, 516
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:3155687-3156481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
566, 153
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr14:25836325-25837134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
546, 572
               

               
Conread position:
               
28-842
               

               
Cow position:
               
chr14:25877017-25877831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
819
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
28-844
               

               
Cow position:
               
chr14:25895224-25896040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
824
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
34-422
               

               
Cow position:
               
chr14:25860392-25860780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
34-556
               

               
Cow position:
               
chr14:3100970-3100451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
427, 5
               

               
Conread position:
               
39-423
               

               
Cow position:
               
chr14:434015-434400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 178
               

               
Conread position:
               
51-798
               

               
Cow position:
               
chr14:25859233-25859980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
258, 269
               

               
Conread position:
               
54-436
               

               
Cow position:
               
chr14:3100869-3100487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
318, 337
               

               
Conread position:
               
57-806
               

               
Cow position:
               
chr14:3101113-3100369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
348, 56
               

               
Conread position:
               
63-837
               

               
Cow position:
               
chr14:3061764-3060990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
64-844
               

               
Cow position:
               
chr14:3061511-3060731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 126
               

               
Conread position:
               
65-828
               

               
Cow position:
               
chr14:680370-681133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 332
               

               
Conread position:
               
67-462
               

               
Cow position:
               
chr14:25910896-25911291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
240, 253
               

               
Conread position:
               
67-564
               

               
Cow position:
               
chr14:25895851-25896348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 123
               

               
Conread position:
               
67-669
               

               
Cow position:
               
chr14:433791-434393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr14:176-416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
75-828
               

               
Cow position:
               
chr14:25894935-25895688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
77-836
               

               
Cow position:
               
chr14:25859427-25860186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
506, 484
               

               
Conread position:
               
84-462
               

               
Cow position:
               
chr14:663488-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
214, 14
               

               
Conread position:
               
85-828
               

               
Cow position:
               
chr14:3155408-3156136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
85-837
               

               
Cow position:
               
chr14:680222-680974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
389, 394
               

               
Conread position:
               
88-671
               

               
Cow position:
               
chr14:3155900-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
512, 498
               

               
Conread position:
               
88-809
               

               
Cow position:
               
chr14:25836049-25836770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
118-837
               

               
Cow position:
               
chr14:3128158-3127439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
469, 482
               

               
Conread position:
               
129-762
               

               
Cow position:
               
chr14:433769-434402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
136-830
               

               
Cow position:
               
chr14:447555-448249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 268
               

               
Conread position:
               
165-333
               

               
Cow position:
               
chr14:185-353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
169-841
               

               
Cow position:
               
chr14:3061742-3061070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 229
               

               
Conread position:
               
172-754
               

               
Cow position:
               
chr14:3155900-3156482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
194-837
               

               
Cow position:
               
chr14:3128166-3127523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 210
               

               
Conread position:
               
234-804
               

               
Cow position:
               
chr14:25894926-25895496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 245
               

               
Conread position:
               
234-837
               

               
Cow position:
               
chr14:433790-434393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
235-837
               

               
Cow position:
               
chr14:447570-448172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-662
               

               
Cow position:
               
chr14:3155406-3155817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
224, 228
               

               
Conread position:
               
251-850
               

               
Cow position:
               
chr14:680220-680819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 153
               

               
Conread position:
               
260-631
               

               
Cow position:
               
chr14:663480-663110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 6
               

               
Conread position:
               
318-837
               

               
Cow position:
               
chr14:447569-448088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
319-841
               

               
Cow position:
               
chr14:433791-434313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
342-841
               

               
Cow position:
               
chr14:447509-448008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
245, 258
               

               
Conread position:
               
361-839
               

               
Cow position:
               
chr14:3155921-3156399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
420-841
               

               
Cow position:
               
chr14:3061743-3061322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
167, 180
               

               
Conread position:
               
421-798
               

               
Cow position:
               
chr14:663488-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 119
               

               
Conread position:
               
448-842
               

               
Cow position:
               
chr14:3155435-3155829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 152
               

               
Conread position:
               
482-850
               

               
Cow position:
               
chr14:3061768-3061397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
483-837
               

               
Cow position:
               
chr14:25894923-25895277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
120, 108
               

               
Conread position:
               
499-850
               

               
Cow position:
               
chr14:680216-680567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
506-844
               

               
Cow position:
               
chr14:433810-434148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
508-850
               

               
Cow position:
               
chr14:3155411-3155753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
512-837
               

               
Cow position:
               
chr14:663480-663156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
599-844
               

               
Cow position:
               
chr14:25894955-25895200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
613-841
               

               
Cow position:
               
chr14:3155432-3155660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-481
               

               
Cow position:
               
chr15:19139131-19138678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
210, 197
               

               
Conread position:
               
28-717
               

               
Cow position:
               
chr15:19139382-19138693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 140
               

               
Conread position:
               
28-845
               

               
Cow position:
               
chr15:48468462-48469285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
103, 114
               

               
Conread position:
               
32-554
               

               
Cow position:
               
chr15:19139210-19138689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
184-844
               

               
Cow position:
               
chr15:19139394-19138734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
167, 154
               

               
Conread position:
               
9-288
               

               
Cow position:
               
chr16:36865402-36865123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
32-524
               

               
Cow position:
               
chr16:14627388-14626895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
599-838
               

               
Cow position:
               
chr16:36865400-36865161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr17:41440452-41440187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr17:41440536-41440213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 228
               

               
Conread position:
               
1-767
               

               
Cow position:
               
chr17:44467607-44468373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 219
               

               
Conread position:
               
6-703
               

               
Cow position:
               
chr17:41440867-41440171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 391
               

               
Conread position:
               
14-842
               

               
Cow position:
               
chr17:44467452-44468280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
836
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 203
               

               
Conread position:
               
19-435
               

               
Cow position:
               
chr17:44467961-44468377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 201
               

               
Conread position:
               
19-798
               

               
Cow position:
               
chr17:44467541-44468320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 261
               

               
Conread position:
               
19-842
               

               
Cow position:
               
chr17:41441022-41440199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
827
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 156
               

               
Conread position:
               
19-850
               

               
Cow position:
               
chr17:44467373-44468204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
837
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 201
               

               
Conread position:
               
28-818
               

               
Cow position:
               
chr17:22552322-22551532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
433, 424
               

               
Conread position:
               
28-850
               

               
Cow position:
               
chr17:41441097-41440275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
826
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 447
               

               
Conread position:
               
67-551
               

               
Cow position:
               
chr17:22552031-22551547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
335, 330
               

               
Conread position:
               
67-837
               

               
Cow position:
               
chr17:22552871-22552101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
278, 269
               

               
Conread position:
               
76-836
               

               
Cow position:
               
chr17:22552526-22551766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
160, 153
               

               
Conread position:
               
91-846
               

               
Cow position:
               
chr17:41441118-41440363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 346
               

               
Conread position:
               
422-844
               

               
Cow position:
               
chr17:44467355-44467778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 156
               

               
Conread position:
               
492-850
               

               
Cow position:
               
chr17:44467339-44467700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr18:56391095-56390816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
267, 0
               

               
Conread position:
               
1-555
               

               
Cow position:
               
chr18:56391431-56390877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 296
               

               
Conread position:
               
1-714
               

               
Cow position:
               
chr18:56329599-56328886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
434, 439
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr18:44817738-44818108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr18:44944377-44944609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 54
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr18:56391897-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr18:47846344-47846023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
229, 222
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr18:54668690-54668348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 66
               

               
Conread position:
               
6-839
               

               
Cow position:
               
chr18:22844196-22843351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
851
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr18:42724244-42723929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
8-389
               

               
Cow position:
               
chr18:56494103-56494484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-416
               

               
Cow position:
               
chr18:55066767-55066359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-828
               

               
Cow position:
               
chr18:53586824-53586004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
394, 374
               

               
Conread position:
               
8-839
               

               
Cow position:
               
chr18:51400287-51401118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
466, 471
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr18:56316729-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
242, 250
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr18:56391171-56390818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
213, 203
               

               
Conread position:
               
9-434
               

               
Cow position:
               
chr18:55067018-55066593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
9-436
               

               
Cow position:
               
chr18:55497446-55497018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
9-461
               

               
Cow position:
               
chr18:53610207-53609755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
203, 212
               

               
Conread position:
               
9-464
               

               
Cow position:
               
chr18:49022738-49023192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
389, 395
               

               
Conread position:
               
9-474
               

               
Cow position:
               
chr18:49032618-49032153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 209
               

               
Conread position:
               
9-768
               

               
Cow position:
               
chr18:22844361-22843598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 181
               

               
Conread position:
               
9-831
               

               
Cow position:
               
chr18:53635868-53635046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
578, 591
               

               
Conread position:
               
9-836
               

               
Cow position:
               
chr18:56128297-56129124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
830
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
578, 591
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr18:56329843-56329015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
9-841
               

               
Cow position:
               
chr18:56330011-56329179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 431
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:22844277-22843430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
850
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 299
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:49033206-49032371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
841
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 431
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:56316225-56317060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
842
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 220
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr18:42724406-42723959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
15-632
               

               
Cow position:
               
chr18:54668933-54668314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr18:54669656-54669463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr18:54664102-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-360
               

               
Cow position:
               
chr18:56391969-56391625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
320, 0
               

               
Conread position:
               
18-683
               

               
Cow position:
               
chr18:56391498-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 194
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr18:55497520-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 200
               

               
Conread position:
               
19-467
               

               
Cow position:
               
chr18:47846499-47846051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
257, 261
               

               
Conread position:
               
19-545
               

               
Cow position:
               
chr18:50848521-50849047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-546
               

               
Cow position:
               
chr18:22843844-22843308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 174
               

               
Conread position:
               
19-552
               

               
Cow position:
               
chr18:40306607-40307140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
212, 204
               

               
Conread position:
               
19-554
               

               
Cow position:
               
chr18:42724486-42723951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
19-595
               

               
Cow position:
               
chr18:44817843-44818435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
271, 284
               

               
Conread position:
               
19-767
               

               
Cow position:
               
chr18:56391581-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 383
               

               
Conread position:
               
27-170
               

               
Cow position:
               
chr18:56328985-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr18:56267434-56267125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-462
               

               
Cow position:
               
chr18:47846575-47846140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
27-480
               

               
Cow position:
               
chr18:14453994-14453541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
27-483
               

               
Cow position:
               
chr18:56329321-56328865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 413
               

               
Conread position:
               
27-795
               

               
Cow position:
               
chr18:52012333-52011565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 201
               

               
Conread position:
               
27-805
               

               
Cow position:
               
chr18:49022338-49023114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
208, 202
               

               
Conread position:
               
28-254
               

               
Cow position:
               
chr18:56329068-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-292
               

               
Cow position:
               
chr18:43048701-43048437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-409
               

               
Cow position:
               
chr18:49021678-49022059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
313, 307
               

               
Conread position:
               
28-452
               

               
Cow position:
               
chr18:49032515-49032091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
412, 406
               

               
Conread position:
               
28-461
               

               
Cow position:
               
chr18:33064491-33064058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 99
               

               
Conread position:
               
28-516
               

               
Cow position:
               
chr18:56316580-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
369, 376
               

               
Conread position:
               
28-524
               

               
Cow position:
               
chr18:49032683-49032187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
445, 451
               

               
Conread position:
               
28-539
               

               
Cow position:
               
chr18:40306364-40306875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
268, 277
               

               
Conread position:
               
28-540
               

               
Cow position:
               
chr18:42693853-42693340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 104
               

               
Conread position:
               
28-546
               

               
Cow position:
               
chr18:55497595-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 196
               

               
Conread position:
               
28-551
               

               
Cow position:
               
chr18:42724561-42724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:42744522-42743993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
437, 430
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:51400559-51401088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 448
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:53610272-53609743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 196
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:56329404-56328875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 185
               

               
Conread position:
               
28-683
               

               
Cow position:
               
chr18:55497679-55497022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 373
               

               
Conread position:
               
28-685
               

               
Cow position:
               
chr18:53635681-53635025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 421
               

               
Conread position:
               
28-707
               

               
Cow position:
               
chr18:53610356-53609676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 354
               

               
Conread position:
               
28-767
               

               
Cow position:
               
chr18:56316328-56317067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 416
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr18:42744606-42743806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr18:53586972-53586172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
181, 203
               

               
Conread position:
               
28-830
               

               
Cow position:
               
chr18:41949321-41948519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
809
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
28-832
               

               
Cow position:
               
chr18:53636017-53635213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-832
               

               
Cow position:
               
chr18:56128148-56128952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033019-49032210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033103-49032294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 430
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033271-49032462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 376
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:56316076-56316885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 375
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:56329908-56329099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
566, 572
               

               
Conread position:
               
28-841
               

               
Cow position:
               
chr18:56330160-56329347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 374
               

               
Conread position:
               
30-809
               

               
Cow position:
               
chr18:51400141-51400920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr18:56329149-56328848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr18:56128739-56129164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 394
               

               
Conread position:
               
32-563
               

               
Cow position:
               
chr18:42792338-42792870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 366
               

               
Conread position:
               
32-788
               

               
Cow position:
               
chr18:53610437-53609681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 349
               

               
Conread position:
               
39-797
               

               
Cow position:
               
chr18:44398401-44397643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
422, 418
               

               
Conread position:
               
39-837
               

               
Cow position:
               
chr18:52012405-52011607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 342
               

               
Conread position:
               
50-442
               

               
Cow position:
               
chr18:56329212-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
50-837
               

               
Cow position:
               
chr18:56330054-56329267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
51-684
               

               
Cow position:
               
chr18:56316435-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 178
               

               
Conread position:
               
52-462
               

               
Cow position:
               
chr18:1418137-1418547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
383, 388
               

               
Conread position:
               
52-708
               

               
Cow position:
               
chr18:56128508-56129163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 254
               

               
Conread position:
               
53-825
               

               
Cow position:
               
chr18:53636075-53635304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 14
               

               
Conread position:
               
54-546
               

               
Cow position:
               
chr18:50848809-50849300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
54-791
               

               
Cow position:
               
chr18:42675183-42674447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
245, 13
               

               
Conread position:
               
54-836
               

               
Cow position:
               
chr18:56329631-56328848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 387
               

               
Conread position:
               
56-817
               

               
Cow position:
               
chr18:53610495-53609735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
56-836
               

               
Cow position:
               
chr18:40306224-40307004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
57-462
               

               
Cow position:
               
chr18:33064042-33063637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
155, 161
               

               
Conread position:
               
57-549
               

               
Cow position:
               
chr18:1418058-1418550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
58-553
               

               
Cow position:
               
chr18:50246050-50246545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
156, 161
               

               
Conread position:
               
58-837
               

               
Cow position:
               
chr18:33064377-33063598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
154, 162
               

               
Conread position:
               
61-462
               

               
Cow position:
               
chr18:33064542-33064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
374, 379
               

               
Conread position:
               
61-824
               

               
Cow position:
               
chr18:42837876-42837113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
496, 490
               

               
Conread position:
               
63-376
               

               
Cow position:
               
chr18:51367534-51367220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
64-467
               

               
Cow position:
               
chr18:56493991-56494394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
64-539
               

               
Cow position:
               
chr18:52428284-52428759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
64-841
               

               
Cow position:
               
chr18:52012462-52011687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
65-539
               

               
Cow position:
               
chr18:50281822-50282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
309, 314
               

               
Conread position:
               
65-539
               

               
Cow position:
               
chr18:52433466-52433940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
65-753
               

               
Cow position:
               
chr18:47846705-47846017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
66-356
               

               
Cow position:
               
chr18:44818619-44818908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
279, 0
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chr18:56267479-56267122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-455
               

               
Cow position:
               
chr18:50281907-50282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 163
               

               
Conread position:
               
66-475
               

               
Cow position:
               
chr18:42792457-42792866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-546
               

               
Cow position:
               
chr18:56247748-56247276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
226, 238
               

               
Conread position:
               
66-816
               

               
Cow position:
               
chr18:42791953-42792703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
338, 331
               

               
Conread position:
               
66-828
               

               
Cow position:
               
chr18:42791785-42792547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
534, 499
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr18:50030749-50030442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
67-409
               

               
Cow position:
               
chr18:50281992-50282334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 160
               

               
Conread position:
               
67-433
               

               
Cow position:
               
chr18:1418236-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-479
               

               
Cow position:
               
chr18:50246311-50246723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
67-546
               

               
Cow position:
               
chr18:50246227-50246706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
233, 245
               

               
Conread position:
               
67-546
               

               
Cow position:
               
chr18:50271527-50272006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 62
               

               
Conread position:
               
67-551
               

               
Cow position:
               
chr18:52447678-52448162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-557
               

               
Cow position:
               
chr18:52428371-52428861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 160
               

               
Conread position:
               
67-557
               

               
Cow position:
               
chr18:52433552-52434042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
240, 250
               

               
Conread position:
               
67-798
               

               
Cow position:
               
chr18:42791702-42792433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
520, 534
               

               
Conread position:
               
67-798
               

               
Cow position:
               
chr18:50848401-50849132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
368, 373
               

               
Conread position:
               
67-803
               

               
Cow position:
               
chr18:52447090-52447826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
240, 250
               

               
Conread position:
               
67-836
               

               
Cow position:
               
chr18:50848485-50849254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
156, 168
               

               
Conread position:
               
67-837
               

               
Cow position:
               
chr18:49033316-49032546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
70-555
               

               
Cow position:
               
chr18:14454035-14453550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
225, 231
               

               
Conread position:
               
70-557
               

               
Cow position:
               
chr18:42675336-42674849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
71-557
               

               
Cow position:
               
chr18:1417988-1418474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
364, 369
               

               
Conread position:
               
75-795
               

               
Cow position:
               
chr18:56128447-56129166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 316
               

               
Conread position:
               
76-433
               

               
Cow position:
               
chr18:43048737-43048380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-825
               

               
Cow position:
               
chr18:56128112-56128861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 364
               

               
Conread position:
               
77-545
               

               
Cow position:
               
chr18:43175028-43174560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
135, 144
               

               
Conread position:
               
79-631
               

               
Cow position:
               
chr18:50281752-50282304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
79-766
               

               
Cow position:
               
chr18:42724594-42723907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
79-800
               

               
Cow position:
               
chr18:50059629-50058908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
79-801
               

               
Cow position:
               
chr18:50059293-50058571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
79-828
               

               
Cow position:
               
chr18:55067116-55066367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
133, 144
               

               
Conread position:
               
79-841
               

               
Cow position:
               
chr18:50848329-50849091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 133
               

               
Conread position:
               
80-798
               

               
Cow position:
               
chr18:33064943-33064225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
272, 276
               

               
Conread position:
               
81-837
               

               
Cow position:
               
chr18:50245989-50246745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 60
               

               
Conread position:
               
82-827
               

               
Cow position:
               
chr18:41949351-41948606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
216, 220
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr18:54664083-54664345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 107
               

               
Conread position:
               
83-848
               

               
Cow position:
               
chr18:22844371-22843598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 175
               

               
Conread position:
               
85-844
               

               
Cow position:
               
chr18:56316049-56316808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
502, 523
               

               
Conread position:
               
88-809
               

               
Cow position:
               
chr18:42744714-42743993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 131
               

               
Conread position:
               
88-844
               

               
Cow position:
               
chr18:56330184-56329428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 128
               

               
Conread position:
               
89-828
               

               
Cow position:
               
chr18:49033378-49032639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
498, 511
               

               
Conread position:
               
96-754
               

               
Cow position:
               
chr18:55497695-55497037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 205
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr18:56391968-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 114
               

               
Conread position:
               
104-558
               

               
Cow position:
               
chr18:56267609-56267155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
112-830
               

               
Cow position:
               
chr18:56391572-56390854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 292
               

               
Conread position:
               
150-844
               

               
Cow position:
               
chr18:53636063-53635369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
437, 450
               

               
Conread position:
               
151-378
               

               
Cow position:
               
chr18:44818620-44818847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
165, 144
               

               
Conread position:
               
151-478
               

               
Cow position:
               
chr18:56267478-56267152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
324, 0
               

               
Conread position:
               
151-841
               

               
Cow position:
               
chr18:47846703-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 146
               

               
Conread position:
               
163-815
               

               
Cow position:
               
chr18:42724594-42723942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
172-630
               

               
Cow position:
               
chr18:44817828-44818289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
302, 307
               

               
Conread position:
               
178-837
               

               
Cow position:
               
chr18:53610542-53609883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
180-837
               

               
Cow position:
               
chr18:55497695-55497038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 420
               

               
Conread position:
               
180-841
               

               
Cow position:
               
chr18:42724829-42724168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
196-500
               

               
Cow position:
               
chr18:56391959-56391655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
198, 184
               

               
Conread position:
               
196-714
               

               
Cow position:
               
chr18:54668836-54668316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
196-797
               

               
Cow position:
               
chr18:53587056-53586455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
196-842
               

               
Cow position:
               
chr18:56391572-56390927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 208
               

               
Conread position:
               
231-837
               

               
Cow position:
               
chr18:53636066-53635460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
247-837
               

               
Cow position:
               
chr18:56128115-56128705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 157
               

               
Conread position:
               
251-841
               

               
Cow position:
               
chr18:56316047-56316637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
257-831
               

               
Cow position:
               
chr18:42724584-42724010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
337, 311
               

               
Conread position:
               
257-850
               

               
Cow position:
               
chr18:56330183-56329590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 302
               

               
Conread position:
               
262-850
               

               
Cow position:
               
chr18:56391590-56391002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
280-557
               

               
Cow position:
               
chr18:56391959-56391682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 197
               

               
Conread position:
               
280-767
               

               
Cow position:
               
chr18:54668836-54668349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 188
               

               
Conread position:
               
318-608
               

               
Cow position:
               
chr18:44818619-44818908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
167, 140
               

               
Conread position:
               
326-844
               

               
Cow position:
               
chr18:55497714-55497199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
331-798
               

               
Cow position:
               
chr18:44817819-44818289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
235, 250
               

               
Conread position:
               
345-831
               

               
Cow position:
               
chr18:54668939-54668453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
138, 123
               

               
Conread position:
               
353-697
               

               
Cow position:
               
chr18:56391970-56391629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
234, 247
               

               
Conread position:
               
403-714
               

               
Cow position:
               
chr18:56267478-56267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
199, 186
               

               
Conread position:
               
403-776
               

               
Cow position:
               
chr18:44817804-44818180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
415-850
               

               
Cow position:
               
chr18:47846691-47846256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 86
               

               
Conread position:
               
426-668
               

               
Cow position:
               
chr18:54664090-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
161, 170
               

               
Conread position:
               
429-850
               

               
Cow position:
               
chr18:22844361-22843937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 144
               

               
Conread position:
               
429-850
               

               
Cow position:
               
chr18:54668939-54668518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
432-850
               

               
Cow position:
               
chr18:54668768-54668350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
134, 165
               

               
Conread position:
               
437-757
               

               
Cow position:
               
chr18:56391970-56391650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
508-837
               

               
Cow position:
               
chr18:56267457-56267128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
512-788
               

               
Cow position:
               
chr18:54668940-54668664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
167, 159
               

               
Conread position:
               
520-788
               

               
Cow position:
               
chr18:44817840-44818108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
542-836
               

               
Cow position:
               
chr18:44944240-44944535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
546-850
               

               
Cow position:
               
chr18:56391642-56391338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
570-848
               

               
Cow position:
               
chr18:46317225-46316948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
583-810
               

               
Cow position:
               
chr18:44817819-44818046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
613-844
               

               
Cow position:
               
chr18:56267436-56267205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
615-852
               

               
Cow position:
               
chr18:54664111-54664348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 118
               

               
Conread position:
               
643-826
               

               
Cow position:
               
chr18:54669619-54669436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 88
               

               
Conread position:
               
10-754
               

               
Cow position:
               
chr19:23649731-23650475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 264
               

               
Conread position:
               
19-422
               

               
Cow position:
               
chr19:23650076-23650479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
19-545
               

               
Cow position:
               
chr19:23597131-23597657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-385
               

               
Cow position:
               
chr19:14948357-14947999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
313, 307
               

               
Conread position:
               
28-422
               

               
Cow position:
               
chr19:14960114-14959722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
286, 290
               

               
Conread position:
               
28-433
               

               
Cow position:
               
chr19:23597308-23597713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
184, 190
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr19:14960364-14959837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
28-836
               

               
Cow position:
               
chr19:23649497-23650305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 348
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr19:14940183-14940992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr19:23649413-23650222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
32-462
               

               
Cow position:
               
chr19:14960193-14959766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
52-836
               

               
Cow position:
               
chr19:23596831-23597612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
332, 204
               

               
Conread position:
               
66-837
               

               
Cow position:
               
chr19:14940137-14940908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
520, 534
               

               
Conread position:
               
67-428
               

               
Cow position:
               
chr19:14948401-14948039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 151
               

               
Conread position:
               
67-685
               

               
Cow position:
               
chr19:23597095-23597713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
325, 337
               

               
Conread position:
               
76-431
               

               
Cow position:
               
chr19:14940651-14941006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-767
               

               
Cow position:
               
chr19:23597056-23597711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
323, 328
               

               
Conread position:
               
130-810
               

               
Cow position:
               
chr19:23596825-23597502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
305, 206
               

               
Conread position:
               
248-837
               

               
Cow position:
               
chr19:23649297-23649886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
339, 352
               

               
Conread position:
               
613-841
               

               
Cow position:
               
chr19:23649410-23649638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 118
               

               
Conread position:
               
9-754
               

               
Cow position:
               
chr2:82799700-82800445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
12-546
               

               
Cow position:
               
chr2:86465024-86465557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
246, 15
               

               
Conread position:
               
24-370
               

               
Cow position:
               
chr2:48689436-48689091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
28-419
               

               
Cow position:
               
chr2:82800055-82800446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 180
               

               
Conread position:
               
28-789
               

               
Cow position:
               
chr2:5875157-5874396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
28-819
               

               
Cow position:
               
chr2:82799551-82800342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
798
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 99
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr2:82799467-82800276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 190
               

               
Conread position:
               
64-545
               

               
Cow position:
               
chr2:86464991-86465471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
401, 394
               

               
Conread position:
               
88-563
               

               
Cow position:
               
chr2:48689540-48689066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
409, 126
               

               
Conread position:
               
123-837
               

               
Cow position:
               
chr2:5875146-5874432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 94
               

               
Conread position:
               
277-841
               

               
Cow position:
               
chr2:82799464-82800028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
193, 183
               

               
Conread position:
               
185-740
               

               
Cow position:
               
chr20:6661056-6660501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 124
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr21:12608260-12607928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
289, 308
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr21:12608423-12607967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr21:12659678-12660002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
9-462
               

               
Cow position:
               
chr21:12659510-12659963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-630
               

               
Cow position:
               
chr21:12608588-12607967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
473, 466
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr21:12659006-12659834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
578, 591
               

               
Conread position:
               
10-588
               

               
Cow position:
               
chr21:12659428-12660005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 9
               

               
Conread position:
               
10-837
               

               
Cow position:
               
chr21:12608754-12607928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 9
               

               
Conread position:
               
14-844
               

               
Cow position:
               
chr21:12658927-12659757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 203
               

               
Conread position:
               
27-419
               

               
Cow position:
               
chr21:34222944-34222552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
288, 293
               

               
Conread position:
               
27-631
               

               
Cow position:
               
chr21:12659360-12659964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 202
               

               
Conread position:
               
28-512
               

               
Cow position:
               
chr21:34223027-34222543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
287, 292
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr21:12608821-12608012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 89
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr21:12608905-12608096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 281
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr21:12659193-12660002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 369
               

               
Conread position:
               
28-841
               

               
Cow position:
               
chr21:12659109-12659922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 188
               

               
Conread position:
               
28-844
               

               
Cow position:
               
chr21:12658857-12659673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
820
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 189
               

               
Conread position:
               
34-557
               

               
Cow position:
               
chr21:34223102-34222582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
58-844
               

               
Cow position:
               
chr21:12658803-12659589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
790
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 339
               

               
Conread position:
               
84-677
               

               
Cow position:
               
chr21:34223136-34222544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
166-741
               

               
Cow position:
               
chr21:11852253-11852827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
351, 7
               

               
Conread position:
               
217-844
               

               
Cow position:
               
chr21:12608884-12608257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 242
               

               
Conread position:
               
280-841
               

               
Cow position:
               
chr21:12608905-12608344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 320
               

               
Conread position:
               
361-850
               

               
Cow position:
               
chr21:12608908-12608419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
226, 247
               

               
Conread position:
               
10-817
               

               
Cow position:
               
chr22:12399836-12399030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr22:12418760-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-452
               

               
Cow position:
               
chr22:12418919-12418494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
364, 377
               

               
Conread position:
               
28-294
               

               
Cow position:
               
chr22:11701378-11701644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
184, 196
               

               
Conread position:
               
28-432
               

               
Cow position:
               
chr22:11641051-11641455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-468
               

               
Cow position:
               
chr22:11701126-11701566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 189
               

               
Conread position:
               
28-605
               

               
Cow position:
               
chr22:12419002-12418425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 201
               

               
Conread position:
               
28-713
               

               
Cow position:
               
chr22:12431715-12431030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
376, 371
               

               
Conread position:
               
28-807
               

               
Cow position:
               
chr22:12432219-12431440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-827
               

               
Cow position:
               
chr22:12499063-12499862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
804
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
220, 214
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr22:12399567-12398767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
108, 99
               

               
Conread position:
               
28-836
               

               
Cow position:
               
chr22:12476280-12475472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
304, 298
               

               
Conread position:
               
28-836
               

               
Cow position:
               
chr22:12498979-12499787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
816
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
260, 274
               

               
Conread position:
               
52-480
               

               
Cow position:
               
chr22:12385366-12384937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
5, 101
               

               
Conread position:
               
53-348
               

               
Cow position:
               
chr22:11666665-11666960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 82
               

               
Conread position:
               
57-418
               

               
Cow position:
               
chr22:12399118-12398757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-545
               

               
Cow position:
               
chr22:12431518-12431030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
57-553
               

               
Cow position:
               
chr22:11640828-11641324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-837
               

               
Cow position:
               
chr22:12431854-12431074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
433, 442
               

               
Conread position:
               
58-566
               

               
Cow position:
               
chr22:12385445-12384935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
58-685
               

               
Cow position:
               
chr22:12475914-12475287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
479, 486
               

               
Conread position:
               
58-685
               

               
Cow position:
               
chr22:12499345-12499972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
63-828
               

               
Cow position:
               
chr22:11640666-11641431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 82
               

               
Conread position:
               
64-803
               

               
Cow position:
               
chr22:12399699-12398960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
487, 477
               

               
Conread position:
               
85-553
               

               
Cow position:
               
chr22:11701099-11701567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
151, 142
               

               
Conread position:
               
96-669
               

               
Cow position:
               
chr22:12419018-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
308, 301
               

               
Conread position:
               
97-830
               

               
Cow position:
               
chr22:11640616-11641349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
490, 503
               

               
Conread position:
               
118-481
               

               
Cow position:
               
chr22:12458577-12458214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
353, 339
               

               
Conread position:
               
196-762
               

               
Cow position:
               
chr22:11701126-11701692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
202, 208
               

               
Conread position:
               
199-836
               

               
Cow position:
               
chr22:12419267-12418614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 16
               

               
Conread position:
               
217-762
               

               
Cow position:
               
chr22:12418981-12418436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
187, 180
               

               
Conread position:
               
224-837
               

               
Cow position:
               
chr22:11640659-11641272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr23:25724019-25723710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
266, 274
               

               
Conread position:
               
27-433
               

               
Cow position:
               
chr23:24639660-24640066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
28-305
               

               
Cow position:
               
chr23:24546969-24546692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-335
               

               
Cow position:
               
chr23:24535768-24535461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-417
               

               
Cow position:
               
chr23:25724102-25723713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-461
               

               
Cow position:
               
chr23:25660176-25660609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
407, 412
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr23:25698631-25698102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
28-761
               

               
Cow position:
               
chr23:24560865-24560132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 412
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr23:24639241-24640050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 159
               

               
Conread position:
               
32-557
               

               
Cow position:
               
chr23:24547218-24546692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
9, 423
               

               
Conread position:
               
50-409
               

               
Cow position:
               
chr23:24547031-24546672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
58-395
               

               
Cow position:
               
chr23:25626670-25627007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
64-685
               

               
Cow position:
               
chr23:24639445-24640066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
523, 536
               

               
Conread position:
               
67-817
               

               
Cow position:
               
chr23:25626010-25626757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
368, 372
               

               
Conread position:
               
78-837
               

               
Cow position:
               
chr23:24560897-24560140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
274, 19
               

               
Conread position:
               
81-481
               

               
Cow position:
               
chr23:24626302-24626702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
379, 373
               

               
Conread position:
               
196-549
               

               
Cow position:
               
chr23:25724102-25723748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
278, 283
               

               
Conread position:
               
251-677
               

               
Cow position:
               
chr23:24626304-24626730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
210, 203
               

               
Conread position:
               
10-837
               

               
Cow position:
               
chr24:17078339-17077512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
425, 430
               

               
Conread position:
               
27-557
               

               
Cow position:
               
chr24:17070482-17071012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
361, 356
               

               
Conread position:
               
28-694
               

               
Cow position:
               
chr24:17035682-17035016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-754
               

               
Cow position:
               
chr24:17078237-17077511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
435, 429
               

               
Conread position:
               
28-791
               

               
Cow position:
               
chr24:17036354-17035591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
437, 429
               

               
Conread position:
               
34-837
               

               
Cow position:
               
chr24:17036432-17035629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
165, 181
               

               
Conread position:
               
50-818
               

               
Cow position:
               
chr24:17036500-17035732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
469, 474
               

               
Conread position:
               
88-836
               

               
Cow position:
               
chr24:17078345-17077597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
373, 369
               

               
Conread position:
               
91-395
               

               
Cow position:
               
chr24:17070462-17070766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
286, 279
               

               
Conread position:
               
165-837
               

               
Cow position:
               
chr24:17036552-17035881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
270, 7
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr25:3637009-3636800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr25:3676157-3676399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
234, 228
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr25:24384999-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
254, 249
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr25:25653025-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 228
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr25:33506829-33507155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 308
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr25:3636313-3635981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
289, 300
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr25:4657384-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 228
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr25:25652941-25653312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr25:33530394-33530815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr25:34473672-34474100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
211, 189
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr25:3636481-3636020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
443, 447
               

               
Conread position:
               
1-616
               

               
Cow position:
               
chr25:24398990-24398378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 187
               

               
Conread position:
               
1-621
               

               
Cow position:
               
chr25:33530142-33530762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 189
               

               
Conread position:
               
5-714
               

               
Cow position:
               
chr25:24385415-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 365
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr25:33529268-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-844
               

               
Cow position:
               
chr25:25652274-25653112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
840
               

               
Alignm identity:
               
607
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
799, 794
               

               
Conread position:
               
7-386
               

               
Cow position:
               
chr25:33506751-33507130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-546
               

               
Cow position:
               
chr25:3636559-3636020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr25:23267246-23266993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr25:3664272-3664597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 220
               

               
Conread position:
               
9-408
               

               
Cow position:
               
chr25:4657460-4657061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
310, 301
               

               
Conread position:
               
9-418
               

               
Cow position:
               
chr25:34763335-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
227, 119
               

               
Conread position:
               
9-420
               

               
Cow position:
               
chr25:3675997-3676408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 119
               

               
Conread position:
               
9-473
               

               
Cow position:
               
chr25:3664104-3664568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
9-760
               

               
Cow position:
               
chr25:25652613-25653365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 242
               

               
Conread position:
               
9-799
               

               
Cow position:
               
chr25:25652529-25653319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 466
               

               
Conread position:
               
9-842
               

               
Cow position:
               
chr25:25652193-25653027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr25:25652361-25653196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 395
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr25:25652445-25653280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
417, 410
               

               
Conread position:
               
10-521
               

               
Cow position:
               
chr25:33157299-33156788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 208
               

               
Conread position:
               
10-837
               

               
Cow position:
               
chr25:34762835-34763656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
831
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
579, 284
               

               
Conread position:
               
11-660
               

               
Cow position:
               
chr25:34446945-34447594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
452, 446
               

               
Conread position:
               
14-516
               

               
Cow position:
               
chr25:34473601-34474100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 208
               

               
Conread position:
               
14-673
               

               
Cow position:
               
chr25:3663941-3664600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
15-341
               

               
Cow position:
               
chr25:3637082-3636753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 289
               

               
Conread position:
               
16-715
               

               
Cow position:
               
chr25:33530073-33530772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 220
               

               
Conread position:
               
17-489
               

               
Cow position:
               
chr25:33530326-33530798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 380
               

               
Conread position:
               
18-254
               

               
Cow position:
               
chr25:3636212-3635976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-372
               

               
Cow position:
               
chr25:33529112-33529466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-211
               

               
Cow position:
               
chr25:34733910-34733718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr25:33529029-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 382
               

               
Conread position:
               
19-767
               

               
Cow position:
               
chr25:33157542-33156794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
19-837
               

               
Cow position:
               
chr25:24399212-24398409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 167
               

               
Conread position:
               
24-418
               

               
Cow position:
               
chr25:33299423-33299817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
290, 294
               

               
Conread position:
               
26-473
               

               
Cow position:
               
chr25:22235851-22236298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
293, 284
               

               
Conread position:
               
26-557
               

               
Cow position:
               
chr25:33127657-33128187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
27-320
               

               
Cow position:
               
chr25:33529205-33529498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-322
               

               
Cow position:
               
chr25:34733986-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 163
               

               
Conread position:
               
27-397
               

               
Cow position:
               
chr25:3636371-3636001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-817
               

               
Cow position:
               
chr25:33298922-33299712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 194
               

               
Conread position:
               
28-418
               

               
Cow position:
               
chr25:36801567-36801957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
286, 290
               

               
Conread position:
               
28-427
               

               
Cow position:
               
chr25:34732584-34732185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
113, 105
               

               
Conread position:
               
28-433
               

               
Cow position:
               
chr25:33127826-33128231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-510
               

               
Cow position:
               
chr25:33127742-33128224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-546
               

               
Cow position:
               
chr25:33144873-33145388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
324, 165
               

               
Conread position:
               
28-573
               

               
Cow position:
               
chr25:33530253-33530798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-632
               

               
Cow position:
               
chr25:24385308-24384704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-668
               

               
Cow position:
               
chr25:22940492-22939842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
263, 277
               

               
Conread position:
               
28-719
               

               
Cow position:
               
chr25:326521-327218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
340, 365
               

               
Conread position:
               
28-817
               

               
Cow position:
               
chr25:33298671-33299460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 412
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr25:33298755-33299564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr25:34762937-34763740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr25:36800823-36801620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
28-839
               

               
Cow position:
               
chr25:34770100-34769289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
32-441
               

               
Cow position:
               
chr25:34447049-34447459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
32-557
               

               
Cow position:
               
chr25:34447217-34447741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 488
               

               
Conread position:
               
41-809
               

               
Cow position:
               
chr25:34770171-34769403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
420, 416
               

               
Conread position:
               
47-852
               

               
Cow position:
               
chr25:33530018-33530827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 359
               

               
Conread position:
               
52-342
               

               
Cow position:
               
chr25:36844488-36844207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
207, 136
               

               
Conread position:
               
57-292
               

               
Cow position:
               
chr25:22941240-22941005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
57-430
               

               
Cow position:
               
chr25:36844567-36844203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
155, 164
               

               
Conread position:
               
65-837
               

               
Cow position:
               
chr25:33157577-33156808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
67-323
               

               
Cow position:
               
chr25:427308-427564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 153
               

               
Conread position:
               
67-333
               

               
Cow position:
               
chr25:23267272-23267006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
67-335
               

               
Cow position:
               
chr25:34763474-34763742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-390
               

               
Cow position:
               
chr25:22941314-22940993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
67-832
               

               
Cow position:
               
chr25:33298626-33299391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
519, 533
               

               
Conread position:
               
69-514
               

               
Cow position:
               
chr25:36844639-36844203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
358, 284
               

               
Conread position:
               
75-396
               

               
Cow position:
               
chr25:34734023-34733701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
76-673
               

               
Cow position:
               
chr25:24398999-24398405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 190
               

               
Conread position:
               
77-515
               

               
Cow position:
               
chr25:4657476-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 113
               

               
Conread position:
               
78-752
               

               
Cow position:
               
chr25:22940526-22939842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 136
               

               
Conread position:
               
79-539
               

               
Cow position:
               
chr25:33299310-33299770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-708
               

               
Cow position:
               
chr25:36800706-36801335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
477, 469
               

               
Conread position:
               
79-837
               

               
Cow position:
               
chr25:326488-327252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
81-446
               

               
Cow position:
               
chr25:34732615-34732252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
306, 297
               

               
Conread position:
               
83-476
               

               
Cow position:
               
chr25:36801538-36801931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
231, 235
               

               
Conread position:
               
83-489
               

               
Cow position:
               
chr25:3675987-3676393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 134
               

               
Conread position:
               
83-557
               

               
Cow position:
               
chr25:33144844-33145315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
175, 168
               

               
Conread position:
               
83-760
               

               
Cow position:
               
chr25:3663926-3664605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
504, 517
               

               
Conread position:
               
85-553
               

               
Cow position:
               
chr25:36801372-36801840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
87-850
               

               
Cow position:
               
chr25:25652187-25652950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
500, 513
               

               
Conread position:
               
88-568
               

               
Cow position:
               
chr25:22235829-22236309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-837
               

               
Cow position:
               
chr25:36801219-36801956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
239, 118
               

               
Conread position:
               
90-660
               

               
Cow position:
               
chr25:34473509-34474076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
304, 292
               

               
Conread position:
               
90-837
               

               
Cow position:
               
chr25:33298565-33299312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 136
               

               
Conread position:
               
92-265
               

               
Cow position:
               
chr25:24397909-24397736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
165, 159
               

               
Conread position:
               
93-456
               

               
Cow position:
               
chr25:22941372-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
93-681
               

               
Cow position:
               
chr25:3636557-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 97
               

               
Conread position:
               
103-467
               

               
Cow position:
               
chr25:33506763-33507127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
103-550
               

               
Cow position:
               
chr25:33529029-33529476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 345
               

               
Conread position:
               
103-798
               

               
Cow position:
               
chr25:24385401-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 301
               

               
Conread position:
               
115-601
               

               
Cow position:
               
chr25:23266995-23266510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
148, 137
               

               
Conread position:
               
140-836
               

               
Cow position:
               
chr25:34446990-34447686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
155, 161
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr25:3637027-3636802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-512
               

               
Cow position:
               
chr25:34734023-34733669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
161-836
               

               
Cow position:
               
chr25:22940527-22939842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
147, 136
               

               
Conread position:
               
163-841
               

               
Cow position:
               
chr25:326488-327172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
372, 490
               

               
Conread position:
               
165-461
               

               
Cow position:
               
chr25:34732615-34732319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
133, 144
               

               
Conread position:
               
167-555
               

               
Cow position:
               
chr25:3675987-3676375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
167-845
               

               
Cow position:
               
chr25:3663926-3664604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
174-826
               

               
Cow position:
               
chr25:24385416-24384762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 216
               

               
Conread position:
               
175-557
               

               
Cow position:
               
chr25:22941374-22940994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
175-765
               

               
Cow position:
               
chr25:3636559-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 298
               

               
Conread position:
               
177-584
               

               
Cow position:
               
chr25:4657460-4657053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 134
               

               
Conread position:
               
196-551
               

               
Cow position:
               
chr25:33506772-33507127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
196-630
               

               
Cow position:
               
chr25:33529038-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
385, 379
               

               
Conread position:
               
223-837
               

               
Cow position:
               
chr25:34446989-34447603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
420, 424
               

               
Conread position:
               
227-839
               

               
Cow position:
               
chr25:3636592-3635979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
234-844
               

               
Cow position:
               
chr25:3637028-3636394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
256, 229
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr25:36844625-36844255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
228, 224
               

               
Conread position:
               
253-762
               

               
Cow position:
               
chr25:23267499-23266997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
341, 180
               

               
Conread position:
               
257-704
               

               
Cow position:
               
chr25:3675993-3676438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
129, 125
               

               
Conread position:
               
257-850
               

               
Cow position:
               
chr25:3663932-3664525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
258-683
               

               
Cow position:
               
chr25:4657463-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 137
               

               
Conread position:
               
258-836
               

               
Cow position:
               
chr25:34473509-34474084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 161
               

               
Conread position:
               
261-628
               

               
Cow position:
               
chr25:22941372-22941005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
263-841
               

               
Cow position:
               
chr25:23267570-23267002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
268-837
               

               
Cow position:
               
chr25:33157545-33156976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
270-850
               

               
Cow position:
               
chr25:24385402-24384822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 202
               

               
Conread position:
               
271-624
               

               
Cow position:
               
chr25:33506763-33507116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
316, 329
               

               
Conread position:
               
272-718
               

               
Cow position:
               
chr25:33506686-33507126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 23
               

               
Conread position:
               
278-548
               

               
Cow position:
               
chr25:34733987-34733717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
108, 126
               

               
Conread position:
               
280-718
               

               
Cow position:
               
chr25:33529038-33529476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 55
               

               
Conread position:
               
327-658
               

               
Cow position:
               
chr25:34734023-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 149
               

               
Conread position:
               
329-837
               

               
Cow position:
               
chr25:33127709-33128215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
188, 15
               

               
Conread position:
               
339-728
               

               
Cow position:
               
chr25:3675991-3676381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
134, 125
               

               
Conread position:
               
340-764
               

               
Cow position:
               
chr25:33127802-33128226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
343-850
               

               
Cow position:
               
chr25:3636559-3636052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 133
               

               
Conread position:
               
345-768
               

               
Cow position:
               
chr25:4657460-4657037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
137, 132
               

               
Conread position:
               
364-817
               

               
Cow position:
               
chr25:22235853-22236306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
374-837
               

               
Cow position:
               
chr25:33127668-33128131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
403-831
               

               
Cow position:
               
chr25:33529077-33529505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
405-798
               

               
Cow position:
               
chr25:22940535-22940142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
69, 63
               

               
Conread position:
               
414-848
               

               
Cow position:
               
chr25:33506738-33507175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
173, 186
               

               
Conread position:
               
417-762
               

               
Cow position:
               
chr25:34734016-34733671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
425-839
               

               
Cow position:
               
chr25:3675993-3676407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 175
               

               
Conread position:
               
439-844
               

               
Cow position:
               
chr25:34762844-34763246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
148, 161
               

               
Conread position:
               
448-836
               

               
Cow position:
               
chr25:4657441-4657053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
483-850
               

               
Cow position:
               
chr25:33506724-33507090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
486-796
               

               
Cow position:
               
chr25:22941315-22941005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
487-850
               

               
Cow position:
               
chr25:24385353-24384990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 113
               

               
Conread position:
               
495-844
               

               
Cow position:
               
chr25:3663918-3664267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 105
               

               
Conread position:
               
503-797
               

               
Cow position:
               
chr25:34732613-34732318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
84, 97
               

               
Conread position:
               
506-826
               

               
Cow position:
               
chr25:34734011-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
507-850
               

               
Cow position:
               
chr25:3675991-3676334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
80, 93
               

               
Conread position:
               
508-804
               

               
Cow position:
               
chr25:33144933-33145226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
510-844
               

               
Cow position:
               
chr25:4657463-4657129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
511-850
               

               
Cow position:
               
chr25:33529101-33529440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 89
               

               
Conread position:
               
522-850
               

               
Cow position:
               
chr25:33529028-33529356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 125
               

               
Conread position:
               
595-844
               

               
Cow position:
               
chr25:24385415-24385164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
602-827
               

               
Cow position:
               
chr25:34733999-34733774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 129
               

               
Conread position:
               
602-850
               

               
Cow position:
               
chr25:4657455-4657207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
607-844
               

               
Cow position:
               
chr25:34473522-34473759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
613-841
               

               
Cow position:
               
chr25:33127823-33128051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
613-850
               

               
Cow position:
               
chr25:427350-427590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 190
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr28:34696252-34696579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
9-573
               

               
Cow position:
               
chr28:34696001-34696565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
10-525
               

               
Cow position:
               
chr28:11334047-11333532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 52
               

               
Conread position:
               
27-321
               

               
Cow position:
               
chr28:33210335-33210630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
227, 0
               

               
Conread position:
               
28-755
               

               
Cow position:
               
chr28:34695852-34696579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 128
               

               
Conread position:
               
34-432
               

               
Cow position:
               
chr28:33210258-33210657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 0
               

               
Conread position:
               
70-553
               

               
Cow position:
               
chr28:11334071-11333588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 76
               

               
Conread position:
               
88-474
               

               
Cow position:
               
chr28:33210228-33210615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 51
               

               
Conread position:
               
116-837
               

               
Cow position:
               
chr28:34695856-34696577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 124
               

               
Conread position:
               
183-837
               

               
Cow position:
               
chr28:34695839-34696493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 141
               

               
Conread position:
               
256-837
               

               
Cow position:
               
chr28:34695828-34696409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 234
               

               
Conread position:
               
361-767
               

               
Cow position:
               
chr28:33210249-33210656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
226, 239
               

               
Conread position:
               
448-817
               

               
Cow position:
               
chr28:33210252-33210622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 129
               

               
Conread position:
               
508-837
               

               
Cow position:
               
chr28:33210228-33210557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr3:20194527-20194706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr3:20194971-20195294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-566
               

               
Cow position:
               
chr3:20194724-20195284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 223
               

               
Conread position:
               
9-258
               

               
Cow position:
               
chr3:63430880-63431129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
223, 200
               

               
Conread position:
               
9-417
               

               
Cow position:
               
chr3:20194895-20195303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
388, 395
               

               
Conread position:
               
18-798
               

               
Cow position:
               
chr3:20194460-20195264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 481
               

               
Conread position:
               
32-482
               

               
Cow position:
               
chr3:62722046-62721595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 271
               

               
Conread position:
               
32-557
               

               
Cow position:
               
chr3:62722130-62721604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 409
               

               
Conread position:
               
33-340
               

               
Cow position:
               
chr3:20194391-20194697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr3:63430872-63431121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr3:63475852-63476102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
167-425
               

               
Cow position:
               
chr3:20194441-20194700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
196-743
               

               
Cow position:
               
chr3:20194746-20195293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 279
               

               
Conread position:
               
315-837
               

               
Cow position:
               
chr3:20194695-20195219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 287
               

               
Conread position:
               
339-850
               

               
Cow position:
               
chr3:20194445-20194980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 161
               

               
Conread position:
               
423-844
               

               
Cow position:
               
chr3:20194721-20195142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
505-766
               

               
Cow position:
               
chr3:20194443-20194706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
542-851
               

               
Cow position:
               
chr3:20194396-20194704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr4:65261387-65261187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 59
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr4:65494770-65494437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
127, 140
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr4:65703502-65703157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
134, 140
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr4:65121698-65122069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
1-462
               

               
Cow position:
               
chr4:65494944-65494477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 314
               

               
Conread position:
               
1-672
               

               
Cow position:
               
chr4:65350126-65350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
201, 220
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr4:65157840-65158176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
68, 143
               

               
Conread position:
               
6-369
               

               
Cow position:
               
chr4:65261550-65261187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
9-703
               

               
Cow position:
               
chr4:65703662-65702968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
14-545
               

               
Cow position:
               
chr4:65121543-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
299, 305
               

               
Conread position:
               
15-422
               

               
Cow position:
               
chr4:65494840-65494433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 210
               

               
Conread position:
               
18-549
               

               
Cow position:
               
chr4:65703569-65703041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 207
               

               
Conread position:
               
18-717
               

               
Cow position:
               
chr4:65261868-65261175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 45
               

               
Conread position:
               
27-674
               

               
Cow position:
               
chr4:65146443-65147093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
185, 195
               

               
Conread position:
               
29-759
               

               
Cow position:
               
chr4:65146363-65147093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
37-549
               

               
Cow position:
               
chr4:65494992-65494474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 105
               

               
Conread position:
               
51-301
               

               
Cow position:
               
chr4:65261421-65261171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 174
               

               
Conread position:
               
58-714
               

               
Cow position:
               
chr4:65350099-65350752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 163
               

               
Conread position:
               
88-785
               

               
Cow position:
               
chr4:65703667-65702970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
91-678
               

               
Cow position:
               
chr4:65495022-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 135
               

               
Conread position:
               
103-798
               

               
Cow position:
               
chr4:65350060-65350752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
103, 123
               

               
Conread position:
               
111-321
               

               
Cow position:
               
chr4:65121163-65121373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
119, 125
               

               
Conread position:
               
111-778
               

               
Cow position:
               
chr4:65261859-65261198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 26
               

               
Conread position:
               
126-844
               

               
Cow position:
               
chr4:65349831-65350546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
151-629
               

               
Cow position:
               
chr4:65121596-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
157-850
               

               
Cow position:
               
chr4:65261896-65261210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
241, 15
               

               
Conread position:
               
167-507
               

               
Cow position:
               
chr4:65157833-65158182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 59
               

               
Conread position:
               
169-550
               

               
Cow position:
               
chr4:65702881-65702500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
259, 251
               

               
Conread position:
               
169-841
               

               
Cow position:
               
chr4:65146417-65147092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
169-848
               

               
Cow position:
               
chr4:65350042-65350718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
310, 306
               

               
Conread position:
               
178-762
               

               
Cow position:
               
chr4:65495019-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 391
               

               
Conread position:
               
259-844
               

               
Cow position:
               
chr4:65495022-65494431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 137
               

               
Conread position:
               
266-797
               

               
Cow position:
               
chr4:65121543-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
310-767
               

               
Cow position:
               
chr4:65702907-65702453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
329-850
               

               
Cow position:
               
chr4:65703679-65703158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
346-850
               

               
Cow position:
               
chr4:65495019-65494509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 260
               

               
Conread position:
               
350-852
               

               
Cow position:
               
chr4:65121543-65122044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
133, 125
               

               
Conread position:
               
420-836
               

               
Cow position:
               
chr4:65702882-65702466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 49
               

               
Conread position:
               
494-848
               

               
Cow position:
               
chr4:65495039-65494675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 106
               

               
Conread position:
               
508-852
               

               
Cow position:
               
chr4:65157838-65158192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 301
               

               
Conread position:
               
514-754
               

               
Cow position:
               
chr4:65121146-65121386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 82
               

               
Conread position:
               
588-759
               

               
Cow position:
               
chr4:65402039-65402209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
607-850
               

               
Cow position:
               
chr4:65146435-65146676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
199, 206
               

               
Conread position:
               
9-839
               

               
Cow position:
               
chr6:49428653-49429483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
488, 466
               

               
Conread position:
               
9-841
               

               
Cow position:
               
chr6:49428485-49429317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
837
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
463, 470
               

               
Conread position:
               
9-841
               

               
Cow position:
               
chr6:49428569-49429401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
837
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr6:49428401-49429236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
841
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr6:49396471-49396919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-816
               

               
Cow position:
               
chr6:49396062-49396853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
18-701
               

               
Cow position:
               
chr6:49428830-49429513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 119
               

               
Conread position:
               
25-418
               

               
Cow position:
               
chr6:49396566-49396959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr6:49340680-49341209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
279, 291
               

               
Conread position:
               
28-761
               

               
Cow position:
               
chr6:49396233-49396966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
375, 369
               

               
Conread position:
               
28-798
               

               
Cow position:
               
chr6:49340512-49341282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
28-819
               

               
Cow position:
               
chr6:49428756-49429543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
796
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr6:49428252-49429061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
816
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 189
               

               
Conread position:
               
50-830
               

               
Cow position:
               
chr6:49428106-49428886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 57
               

               
Conread position:
               
67-554
               

               
Cow position:
               
chr6:49340803-49341290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 150
               

               
Conread position:
               
78-844
               

               
Cow position:
               
chr6:49428218-49428984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 152
               

               
Conread position:
               
88-844
               

               
Cow position:
               
chr6:49340404-49341160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 129
               

               
Conread position:
               
107-809
               

               
Cow position:
               
chr6:49396228-49396930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
480, 493
               

               
Conread position:
               
126-837
               

               
Cow position:
               
chr6:49340358-49341069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
202-844
               

               
Cow position:
               
chr6:49428174-49428816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
1-621
               

               
Cow position:
               
chr7:12293429-12294051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 189
               

               
Conread position:
               
4-766
               

               
Cow position:
               
chr7:12293264-12294024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
6-418
               

               
Cow position:
               
chr7:28846677-28847089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
392, 398
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr7:28846596-28846968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-705
               

               
Cow position:
               
chr7:28846438-28847123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 189
               

               
Conread position:
               
25-798
               

               
Cow position:
               
chr7:3179718-3180491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
562, 575
               

               
Conread position:
               
27-334
               

               
Cow position:
               
chr7:18390437-18390744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-472
               

               
Cow position:
               
chr7:18390354-18390798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 421
               

               
Conread position:
               
28-815
               

               
Cow position:
               
chr7:42879168-42878381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
792
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
50-489
               

               
Cow position:
               
chr7:18390292-18390731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
56-553
               

               
Cow position:
               
chr7:42879056-42878559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
313, 319
               

               
Conread position:
               
56-557
               

               
Cow position:
               
chr7:18390214-18390715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
397, 379
               

               
Conread position:
               
56-836
               

               
Cow position:
               
chr7:3180001-3180781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
407, 401
               

               
Conread position:
               
67-479
               

               
Cow position:
               
chr7:42878709-42878297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
394, 390
               

               
Conread position:
               
67-832
               

               
Cow position:
               
chr7:42879213-42878448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
368, 373
               

               
Conread position:
               
109-755
               

               
Cow position:
               
chr7:28846444-28847090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 184
               

               
Conread position:
               
118-837
               

               
Cow position:
               
chr7:42879246-42878527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
382, 378
               

               
Conread position:
               
121-841
               

               
Cow position:
               
chr7:12293297-12294017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 160
               

               
Conread position:
               
175-811
               

               
Cow position:
               
chr7:12293267-12293903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
196-837
               

               
Cow position:
               
chr7:28846447-28847088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 212
               

               
Conread position:
               
257-837
               

               
Cow position:
               
chr7:18390163-18390743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
192, 176
               

               
Conread position:
               
261-850
               

               
Cow position:
               
chr7:12293269-12293858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 143
               

               
Conread position:
               
280-850
               

               
Cow position:
               
chr7:28846447-28847017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
237, 252
               

               
Conread position:
               
343-844
               

               
Cow position:
               
chr7:12293267-12293768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
363-843
               

               
Cow position:
               
chr7:28846446-28846927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
478, 0
               

               
Conread position:
               
439-837
               

               
Cow position:
               
chr7:28846438-28846836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
575-837
               

               
Cow position:
               
chr7:12293246-12293509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
19-484
               

               
Cow position:
               
chr8:55580837-55581302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
24-474
               

               
Cow position:
               
chr8:55581178-55581628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-546
               

               
Cow position:
               
chr8:55580929-55581448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
510, 517
               

               
Conread position:
               
27-557
               

               
Cow position:
               
chr8:55581013-55581543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-715
               

               
Cow position:
               
chr8:46816597-46817260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
383, 388
               

               
Conread position:
               
67-482
               

               
Cow position:
               
chr8:46816864-46817279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
99-832
               

               
Cow position:
               
chr8:55580833-55581566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
488, 501
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chrX:14181393-14180976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-451
               

               
Cow position:
               
chrX:13826610-13826165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
206, 215
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chrX:13826523-13826154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
203, 216
               

               
Conread position:
               
9-546
               

               
Cow position:
               
chrX:25324994-25324457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
395, 391
               

               
Conread position:
               
27-369
               

               
Cow position:
               
chrX:14181283-14180941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
312, 327
               

               
Conread position:
               
28-585
               

               
Cow position:
               
chrX:13826756-13826199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 110
               

               
Conread position:
               
28-762
               

               
Cow position:
               
chrX:14181618-14180884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
446, 451
               

               
Conread position:
               
28-787
               

               
Cow position:
               
chrX:13826924-13826165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
57-564
               

               
Cow position:
               
chrX:14181505-14180998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
347, 342
               

               
Conread position:
               
62-488
               

               
Cow position:
               
chrX:14181416-14180990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 66
               

               
Conread position:
               
66-546
               

               
Cow position:
               
chrX:25325105-25324625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
151, 155
               

               
Conread position:
               
79-455
               

               
Cow position:
               
chrX:25309713-25310089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-758
               

               
Cow position:
               
chrX:14181639-14180972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
301, 291
               

               
Conread position:
               
172-828
               

               
Cow position:
               
chrX:13826948-13826292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 128
               

               
Conread position:
               
235-837
               

               
Cow position:
               
chrX:14181579-14180977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 229
               

               
Conread position:
               
309-836
               

               
Cow position:
               
chrX:14181589-14181062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 93
               

               
Conread position:
               
331-837
               

               
Cow position:
               
chrX:13826958-13826451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
425-837
               

               
Cow position:
               
chrX:13826947-13826535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
580-850
               

               
Cow position:
               
chrX:14181400-14181132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0