Cow genome map
| Conread name: | Ss1.1-Mixc-0043,i24.5 |
| Conread position: | 306-510 |
| Cow position: | chr10:15569047-15568847 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 319-518 |
| Cow position: | chr10:69897129-69897330 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 319-519 |
| Cow position: | chr10:24147745-24147951 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 51 |
| Conread position: | 320-507 |
| Cow position: | chr10:30109751-30109568 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 326-519 |
| Cow position: | chr10:28680974-28680785 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 336-494 |
| Cow position: | chr10:33180990-33180835 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 318-519 |
| Cow position: | chr11:47966638-47966440 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 5 |
| Conread position: | 328-501 |
| Cow position: | chr11:47992833-47992660 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 50 |
| Conread position: | 330-525 |
| Cow position: | chr11:43082610-43082805 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 331-519 |
| Cow position: | chr11:55253576-55253391 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 336-487 |
| Cow position: | chr11:23999215-23999065 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 322-519 |
| Cow position: | chr13:54625323-54625517 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 326-492 |
| Cow position: | chr13:15970888-15971053 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 326-519 |
| Cow position: | chr13:44371230-44371039 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 332-495 |
| Cow position: | chr13:40626637-40626477 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 326-495 |
| Cow position: | chr14:33754799-33754626 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 329-495 |
| Cow position: | chr14:25804204-25804039 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 138, 41 |
| Conread position: | 329-513 |
| Cow position: | chr14:35166965-35166780 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 330-519 |
| Cow position: | chr14:9284430-9284243 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 40 |
| Conread position: | 330-517 |
| Cow position: | chr15:25266476-25266292 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 129, 40 |
| Conread position: | 330-519 |
| Cow position: | chr15:18607037-18606857 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 330-519 |
| Cow position: | chr15:26805581-26805771 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 299-510 |
| Cow position: | chr16:28549999-28549785 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 327-517 |
| Cow position: | chr16:51913373-51913558 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 330-517 |
| Cow position: | chr16:38724259-38724448 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 331-494 |
| Cow position: | chr16:38497676-38497839 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 336-541 |
| Cow position: | chr16:38181807-38182015 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 43 |
| Conread position: | 312-521 |
| Cow position: | chr17:32086304-32086102 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 154, 14 |
| Conread position: | 369-519 |
| Cow position: | chr17:30705534-30705385 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 318-495 |
| Cow position: | chr18:27971904-27972077 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 326-489 |
| Cow position: | chr18:2233399-2233562 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 326-494 |
| Cow position: | chr18:5442535-5442364 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 326-500 |
| Cow position: | chr18:28716831-28717000 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 328-516 |
| Cow position: | chr18:47624852-47625042 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 330-515 |
| Cow position: | chr18:23014266-23014449 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 333-511 |
| Cow position: | chr18:10203198-10203010 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 336-519 |
| Cow position: | chr19:21421095-21420913 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 317-500 |
| Cow position: | chr21:15948702-15948522 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 320-507 |
| Cow position: | chr21:36023345-36023537 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 330-518 |
| Cow position: | chr21:14365452-14365636 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 390-517 |
| Cow position: | chr21:10209891-10209766 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 397-495 |
| Cow position: | chr21:19222493-19222394 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 284-509 |
| Cow position: | chr22:26674213-26674436 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 179, 23 |
| Conread position: | 329-498 |
| Cow position: | chr22:24888310-24888478 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 330-457 |
| Cow position: | chr22:29555314-29555439 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 336-488 |
| Cow position: | chr22:32489852-32489701 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 322-489 |
| Cow position: | chr23:7745501-7745330 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 326-489 |
| Cow position: | chr23:16915770-16915614 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 133, 53 |
| Conread position: | 330-499 |
| Cow position: | chr23:12801600-12801432 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 336-495 |
| Cow position: | chr23:33840343-33840188 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 123, 35 |
| Conread position: | 356-519 |
| Cow position: | chr23:40531594-40531752 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 331-492 |
| Cow position: | chr24:25182573-25182740 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 122 |
| Conread position: | 317-525 |
| Cow position: | chr25:16146158-16145948 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 330-495 |
| Cow position: | chr25:12516556-12516722 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 330-537 |
| Cow position: | chr25:8376001-8375798 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 332-515 |
| Cow position: | chr25:14275070-14274888 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 336-519 |
| Cow position: | chr25:2018568-2018759 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 326-482 |
| Cow position: | chr26:8038362-8038201 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 330-519 |
| Cow position: | chr27:21441917-21442105 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 330-498 |
| Cow position: | chr28:16847635-16847472 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 143-460 |
| Cow position: | chr6:60585622-60585311 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 432-852 |
| Cow position: | chr6:60585152-60584706 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 302-519 |
| Cow position: | chr7:38124060-38124276 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 157, 15 |
| Conread position: | 330-495 |
| Cow position: | chr7:32987985-32987816 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 40 |
| Conread position: | 330-517 |
| Cow position: | chr7:5904080-5904261 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 336-516 |
| Cow position: | chr7:15741872-15741702 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 338-536 |
| Cow position: | chr7:300232-300041 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 343-519 |
| Cow position: | chr7:18038690-18038518 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 385-507 |
| Cow position: | chr7:64609298-64609174 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 389-499 |
| Cow position: | chr7:44977914-44978025 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 326-495 |
| Cow position: | chr8:17932430-17932597 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 330-516 |
| Cow position: | chr8:27789513-27789695 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 49 |
| Conread position: | 330-519 |
| Cow position: | chr8:29453824-29454011 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 342-519 |
| Cow position: | chr8:32873363-32873538 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 328-516 |
| Cow position: | chr9:44506617-44506431 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 330-515 |
| Cow position: | chrX:19616919-19617103 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 333-502 |
| Cow position: | chrX:19515544-19515370 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 345-504 |
| Cow position: | chrX:18622489-18622650 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 370-518 |
| Cow position: | chrX:24611952-24612101 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 25 |